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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00061038 ID=TCONS_00061038|Name=TCONS_00061038|organism=Clytia hemisphaerica|type=transcript|length=859bp
CATCAACAAAGAAGACAAACTTAAAACAATCAACTTCATCATAAGAAGAA
TTGAAGATGAAGATCTGGAAGGCTTTGTTACTCATCACTTTCTTAGTGTA
CACTGTTTACTGTGAAGAAACTGAAGAGATTGAAAGCAGCTTGGAAGATG
TTGCTGACATTGAAGAAACACCTGCTTTAACATCGAATGACGAAGAAACA
AATGACGAAGATGAAGCAGAGGAGAATGACGAACAAGAAGAAAGTCAAAT
TCAACAAGATGAAGAAAACGATCCTGGACGTCGCCCTCACCCTAGTTCAG
GGGGCTGGCAACTAGTACGAGGAACATGCAATTTAAAAAGATTATCGAAA
TCGTGCCATGTTACGCGAAGAAGATGTTTAAGATACAGATACCATGGATC
ATACGGAAGAAGATGCATGattcgaaaaattttcagaagttGTACAACCG
TTTCTCGAAAGCGATGCAGATTCTGTCGCCGTACTAGACACGGTAGAAAA
TGTGAACGTCGATTTATCGGTCAACGAATCAGACGAACAAGACCCGATAA
TAAAGTTGTAAACATCCCCCCACCACGATATCATTaaggaaaaattataa
ttatcaaaaatgattgaaatttccatttgacttgaaaacttcttgaatcg
atttttattttttctaacattttGTAAATAATTTCAACTTACCTAAACAA
GTAGCAATCCATCAACATCTTCAAACATTTCCAGCGAAATTCAGGAACAG
GAACATATATATTGTCATCTTTACTTGAATTTATTTTCcactttattttt
aatatttcctCCATTATATACGGAATTCTTcatattgtaattttttttct
agagtaaaa Run BLAST on NCBI protein sequence of TCONS_00061038-protein >TCONS_00061038-protein ID=TCONS_00061038-protein|Name=TCONS_00061038-protein|organism=Clytia hemisphaerica|type=polypeptide|length=176bp
MKIWKALLLITFLVYTVYCEETEEIESSLEDVADIEETPALTSNDEETND
EDEAEENDEQEESQIQQDEENDPGRRPHPSSGGWQLVRGTCNLKRLSKSC
HVTRRRCLRYRYHGSYGRRCMIRKIFRSCTTVSRKRCRFCRRTRHGRKCE
RRFIGQRIRRTRPDNKVVNIPPPRYH Run BLAST on NCBI transcript from alignment at scaffold_354:135917..139582+ Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00061038 ID=TCONS_00061038|Name=TCONS_00061038|organism=Clytia hemisphaerica|type=transcript|length=3666bp|location=Sequence derived from alignment at scaffold_354:135917..139582+ (Clytia hemisphaerica)
CATCAACAAAGAAGACAAACTTAAAACAATCAACTTCATCATAAGAAGAA
TTGAAGATGAAGATCTGGAAGGCTTTGTTACTCATCACTTTCTTAGTGTA
CACTGTTTACTGTGAGTTTTTTTTGGcattataatttctttttcacagaT
AGAAAGAAGAGTTCTTTTCCCGGCTCTAATTGAATTATATATAATATTTA
AGagcatacactacacaatataattgtcaggcaatatattgatgatatat
tgctgaatgccAGCAATATATttaaaaggtgtccgcaatatattgtacAG
CTCAATTTGCATTTTATTTTCCAACAATATAGAAGGGGGattatttacag
aaaaaaaaatttctttttataatagagtacctgttatttacttcgtacat
tacggtccaaTAACGATATTATCAACTATtattcgtcaatatattgtgta
gtctaagtaacccttaacattttcaagtttttgaaaaacatatttcTCAA
AAGACATTCTTTTAGCCTCTAAAAATCTCTTTCTAGGTTTCTAGTATCAA
CGTTGTTTATAGAAAAGAAGTTAAGTTGTGTATTTACCAAGTCCATGTAG
AGAATTATAGCCTGTAAACCTGTTCTCTTATCTTCAAAGGTGAAGAAACT
GAAGAGATTGAAAGCAGCTTGGAAGATGTTGCTGACATTGAAGAAACACC
TGCTTTAACATCGAATGACGAAGAAACAAATGACGAAGATGAAGCAGAGG
AGAATGACGAACAAGAAGAAAGTCAAATTCAACAAGATGAAGAAAACGGT
ATGAAAAGATTTCCATCCCATTAAGGCTTTGCATGAAATAGCAAAACAAC
CAATGACCAATGAACAAGAAAATCACAGTCTAAATATTCAAACTGAAGTG
GGAGATCGCTTCCAACCCCCTATTTGACAAAGGAACCCCCCCTGAAAAgt
attagcctatttcataggattcgtgcatCGGTTTTATGCCATTTTCTATT
CAAATTACACGCCACAATGCACACAAATACGAACATATTTCCCTTTAATT
AATAACGCGGGGGATtacccacagatatctgtaaagcccgaagggctaga
taggcaactttaagctttctccagcaaaaaaaagtgaagcaaaaatttga
cgttttaaattttgtgctgatggataggatctagcattttaattgttttc
agagaacgagataaaaaaaagtaggcggcaaacgctatttcgcatctctc
aaaccagtgaaattgcttgttgtcacgtgattttttggtaggaaatccta
ccaaagcctgcttcacttttcgataaaggccgcaaatctagcccttcggg
ctttactaTCTGTGGGATTACCTACTTTTCAAAAGTACAGCCTTTTTGTG
TTTCCTGCCAACTACTAGGTGGCTTAAAGAGACATAAAAgcactgacgaa
atttgtaaacaaaccgtatgcagcgcgATACAAAATCGagacaaatgtca
catgtcaaaacaaaaaaataaaaacaaatatgtctgattttgattgtttc
gaatgttttacaagtttgttttggacacgtgattataattgttctcttta
atgacacgtggttcgcacaATGTtaacattttactacttttatgttcCTT
TAAGGTCGCTTTCAATCTTCTAACATCAAATGTAATGAACGCTACACTTT
GTTAACCATCTCCCAAAGCTCATCTTATTTCATAAAATCAATCCCACACA
TAATGGGCTCCAGAAAATATTTGTAtattgggggtggaggatataaaatt
ttttggaaatttattccccggacattgtgaactttgacccccggacaaca
gatctcatcccccggacaagcatcggttgacccctggacatttaaaatca
cccctaatcagaacaaatttgcccccaaaacaacgcaaattttgaagatt
tttcactaccccccggacaaaatatccaatatatcctccatcccccatGT
ACAAAAGTTTTCCGGAAGAGTCAAATGAAGTCTCAACCAAATTTAAGACA
CAAATAAGTTACTCTAGAAATAATATAACCTGTTTATAGATCCTGGACGT
CGCCCTCACCCTAGTTCAGGGGGCTGGCAACTAGTACGAGGAACATGCAA
TTTAAAAAGATTATCGAAATCGTGCCATGTTACGCGAAGAAGATGTTTAA
GATACAGATACCATGGTAAGTTAtaatatacacgctttttttataagaat
gcactttataagaatgtccatgatgaaaatggccaaaaaaataagaatac
tgtaatgctaagaatatcaccatcatggaattttgctactcaagctaaga
atgcgattttttagagcattttcaattatacattgtcaattacccccaag
aaaggctcactcctttcacaaaaatgccattttatgctcgAGGCGTATGT
ACTAAacttaagaatgctgtaagaatattttaggattcTTTTCCCAATAA
AGCTAGGAATATCcatgttgaaataaaaaaagcgtgtacatgtATAATAG
GCAGATATTCAATaagtaaaagttggttatttagatttattaacccgagg
tgatgtgATATTCAACGAGGTGAAGCtgagttgaatatacatcaccgatg
gttaataaatccaataaccaacgaaaacctattgaaatATATATTCTATT
ATATACTTAGAGGCAAAAACAaaagtataaaatatataaatagtCGAACG
ATTCacataaaacactcccataatcgaacATTAGaatgcttttctttttt
aatgattttcttaattactttgagtcataaaatttgCTCATGAAATCGAT
AGTAGATTTGttcaaataaatttctttgataagaGCGAAAAAAAGACAAA
CTTTGAAAgtcgaatttgaaaaaaaaattctactatGGTATAACAGCCGT
GGTATATTAGGAATTATCCAATCGCTGTTTTTGCCACAGAAAATTAATCT
TGttgaatagaccttatcggagtttttgatttttctaaaaaagcgatgca
ttgtggaattgtttcgagtgtattacaatagaaatctcttaggaattctt
cgagggaattctattgtaatacactcgaaacaatcccacaatgcatcgct
tttttagaaaaataaaaaaccccGATAAGGAATATTCAATCTTTATCTTA
AAGGATCATACGGAAGAAGATGCATGattcgaaaaattttcagaagttGT
ACAACCGTTTCTCGAAAGCGATGCAGATTCTGTCGCCGTACTAGACACGG
TAGAAAATGTGAACGTCGATTTATCGGTCAACGAATCAGACGAACAAGAC
CCGATAATAAAGTTGTAAACATCCCCCCACCACGATATCATTaaggaaaa
attataattatcaaaaatgattgaaatttccatttgacttgaaaacttct
tgaatcgatttttattttttctaacattttGTAAATAATTTCAACTTACC
TAAACAAGTAGCAATCCATCAACATCTTCAAACATTTCCAGCGAAATTCA
GGAACAGGAACATATATATTGTCATCTTTACTTGAATTTATTTTCcactt
tatttttaatatttcctCCATTATATACGGAATTCTTcatattgtaattt
tttttctagagtaaaa Coding sequence (CDS) from alignment at scaffold_354:135917..139582+ >TCONS_00061038 ID=TCONS_00061038|Name=TCONS_00061038|organism=Clytia hemisphaerica|type=CDS|length=2124bp|location=Sequence derived from alignment at scaffold_354:135917..139582+ (Clytia hemisphaerica)
ATGAAGATCTGGAAGGCTTTGTTACTCATCACTTTCTTAGTGTACACTGT
TTACTGTGAAGAAACTGAAGAGATTGAAAGCAGCTTGGAAGATGTTGCTG
ACATTGAAGAAACACCTGCTTTAACATCGAATGACGAAGAAACAAATGAC
GAAGATGAAGCAGAGGAGAATGACGAACAAGAAGAAAGTCAAATTCAACA
AGATGAAGAAAACGATCCTGGACGTCGCCCTCACCCTAGTTCAGGGGGCT
GGCAACTAGTACGAGGAACATGCAATTTAAAAAGATTATCGAAATCGTGC
CATGTTACGCGAAGAAGATGTTTAAGATACAGATACCATGGATCATACGG
AAGAAGATGCATGattcgaaaaattttcagaagttGTACAACCGTTTCTC
GAAAGCGATGCAGATTCTGTCGCCGTACTAGACACGGTAGAAAATGTGAA
CGTCGATTTATCGGTCAACGAATCAGACGAACAAGACCCGATAATAAAGT
TGTAAACATCCCCCCACCACGATATCATTaaATGAAGATCTGGAAGGCTT
TGTTACTCATCACTTTCTTAGTGTACACTGTTTACTGTGAAGAAACTGAA
GAGATTGAAAGCAGCTTGGAAGATGTTGCTGACATTGAAGAAACACCTGC
TTTAACATCGAATGACGAAGAAACAAATGACGAAGATGAAGCAGAGGAGA
ATGACGAACAAGAAGAAAGTCAAATTCAACAAGATGAAGAAAACGATCCT
GGACGTCGCCCTCACCCTAGTTCAGGGGGCTGGCAACTAGTACGAGGAAC
ATGCAATTTAAAAAGATTATCGAAATCGTGCCATGTTACGCGAAGAAGAT
GTTTAAGATACAGATACCATGGATCATACGGAAGAAGATGCATGattcga
aaaattttcagaagttGTACAACCGTTTCTCGAAAGCGATGCAGATTCTG
TCGCCGTACTAGACACGGTAGAAAATGTGAACGTCGATTTATCGGTCAAC
GAATCAGACGAACAAGACCCGATAATAAAGTTGTAAACATCCCCCCACCA
CGATATCATTaaATGAAGATCTGGAAGGCTTTGTTACTCATCACTTTCTT
AGTGTACACTGTTTACTGTGAAGAAACTGAAGAGATTGAAAGCAGCTTGG
AAGATGTTGCTGACATTGAAGAAACACCTGCTTTAACATCGAATGACGAA
GAAACAAATGACGAAGATGAAGCAGAGGAGAATGACGAACAAGAAGAAAG
TCAAATTCAACAAGATGAAGAAAACGATCCTGGACGTCGCCCTCACCCTA
GTTCAGGGGGCTGGCAACTAGTACGAGGAACATGCAATTTAAAAAGATTA
TCGAAATCGTGCCATGTTACGCGAAGAAGATGTTTAAGATACAGATACCA
TGGATCATACGGAAGAAGATGCATGattcgaaaaattttcagaagttGTA
CAACCGTTTCTCGAAAGCGATGCAGATTCTGTCGCCGTACTAGACACGGT
AGAAAATGTGAACGTCGATTTATCGGTCAACGAATCAGACGAACAAGACC
CGATAATAAAGTTGTAAACATCCCCCCACCACGATATCATTaaATGAAGA
TCTGGAAGGCTTTGTTACTCATCACTTTCTTAGTGTACACTGTTTACTGT
GAAGAAACTGAAGAGATTGAAAGCAGCTTGGAAGATGTTGCTGACATTGA
AGAAACACCTGCTTTAACATCGAATGACGAAGAAACAAATGACGAAGATG
AAGCAGAGGAGAATGACGAACAAGAAGAAAGTCAAATTCAACAAGATGAA
GAAAACGATCCTGGACGTCGCCCTCACCCTAGTTCAGGGGGCTGGCAACT
AGTACGAGGAACATGCAATTTAAAAAGATTATCGAAATCGTGCCATGTTA
CGCGAAGAAGATGTTTAAGATACAGATACCATGGATCATACGGAAGAAGA
TGCATGattcgaaaaattttcagaagttGTACAACCGTTTCTCGAAAGCG
ATGCAGATTCTGTCGCCGTACTAGACACGGTAGAAAATGTGAACGTCGAT
TTATCGGTCAACGAATCAGACGAACAAGACCCGATAATAAAGTTGTAAAC
ATCCCCCCACCACGATATCATTaa
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00061038-exon-scaffold_354-1491911889:135917..136027 | TCONS_00061038-exon-scaffold_354-1491911889:135917..136027 | Clytia hemisphaerica | exon |
| TCONS_00061038-exon-scaffold_354-1510915933:135917..136027 | TCONS_00061038-exon-scaffold_354-1510915933:135917..136027 | Clytia hemisphaerica | exon |
| TCONS_00061038-exon-scaffold_354-1575043694:135917..136027 | TCONS_00061038-exon-scaffold_354-1575043694:135917..136027 | Clytia hemisphaerica | exon |
| TCONS_00061038-exon-scaffold_354-1491911889:136556..136714 | TCONS_00061038-exon-scaffold_354-1491911889:136556..136714 | Clytia hemisphaerica | exon |
| TCONS_00061038-exon-scaffold_354-1510915933:136556..136714 | TCONS_00061038-exon-scaffold_354-1510915933:136556..136714 | Clytia hemisphaerica | exon |
| TCONS_00061038-exon-scaffold_354-1575043694:136556..136714 | TCONS_00061038-exon-scaffold_354-1575043694:136556..136714 | Clytia hemisphaerica | exon |
| TCONS_00061038-exon-scaffold_354-1491911889:138006..138131 | TCONS_00061038-exon-scaffold_354-1491911889:138006..138131 | Clytia hemisphaerica | exon |
| TCONS_00061038-exon-scaffold_354-1510915933:138006..138131 | TCONS_00061038-exon-scaffold_354-1510915933:138006..138131 | Clytia hemisphaerica | exon |
| TCONS_00061038-exon-scaffold_354-1575043694:138006..138131 | TCONS_00061038-exon-scaffold_354-1575043694:138006..138131 | Clytia hemisphaerica | exon |
| TCONS_00061038-exon-scaffold_354-1491911889:139120..139582 | TCONS_00061038-exon-scaffold_354-1491911889:139120..139582 | Clytia hemisphaerica | exon |
| TCONS_00061038-exon-scaffold_354-1510915933:139120..139582 | TCONS_00061038-exon-scaffold_354-1510915933:139120..139582 | Clytia hemisphaerica | exon |
| TCONS_00061038-exon-scaffold_354-1575043694:139120..139582 | TCONS_00061038-exon-scaffold_354-1575043694:139120..139582 | Clytia hemisphaerica | exon |
The following polypeptide feature(s) derives from this transcript:
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_354 | supercontig | scaffold_354:135917..139582 + |
Blast
The following BLAST results are available for this feature:
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