TCONS_00061046 (transcript) - C. hemisphaerica

Overview
NameTCONS_00061046
Unique NameTCONS_00061046
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1307

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00061046 ID=TCONS_00061046|Name=TCONS_00061046|organism=Clytia hemisphaerica|type=transcript|length=1307bp
AATAACGCTAAGAAAGTTCAAATCTTAATTCAAACAGTTTtatgtttgtt
tatatttgatgttcgagaaaaaaatcttaacCAAACTAGAGGAGaggaat
atttttaactttagaTTTCAACGGGCAGATGATTGGCAGATTTGTCAGTG
GTTCTTCATAACCTTGATTCAAAGCATCATATCTTAATTGTCGTCCACCT
CTTCTATAGCTAGATTGGCTGTATTGATTGCCGCGTCTCTTAGAATATAT
AGGCTTCCTAGCTATATGTCTTCCACCGAGAGCAGAAGAGGAGGATAGAC
TTGCATTTGTCGGAAGTTGGGATACGTGATGGTGGTGCACTCTGTGAATA
TCTTTGCTGGCTCGAGAAAAATTTCAACACGAATATCAATGAAGCTGAGG
CAGCGGAAAAGCTAGATAAGCTTCGTAGCGAACAAGATAAATTTGTCAGC
TTGAGTTTCGAAACTATATCGTCAATCGGACCAAATTGTGCAGTTATCCA
TTACAAACCAGAAATGGAGACAGCGAAAGTACTCTCAACTGATATGTATC
TTTGTGATTCTGGTGGCCAATATTTGGATGGCACAACAGACGTTACAAGG
ACCATACACTTAGGTACTCCAACAGACCACCAAAAGGAAACGTATACGCG
TGTTTTGAAAGGCCACATCCAGCTAGCCCGTGCTGTATTTCCTAAAGGAA
CAAGAGGGCACATATTAGATGTTCTAGCCCGTGCACCATTATGGGAGATT
GGACTCGAGTATGCGCATGGGACTGGGCATGGAGTTGGTGCTTTCTTAAA
TGTTCACGAAGGACCCATCGGAATCAGTCCGAAGAACAGCGAGGATCCAC
CCTTAGAATCTGGCATGTTTTTATCTGACGAACCTGGTTATTATGAGGAC
GGTTCTTTCGGAATCCGAATTGAAAATATTATACAAGTTgtagagaaaaa
attaaaaCATAATTATGGTAATAGAGGTTACTTAGGATTCGAAGTTGTCA
CAATGgcaCCCCTTTACAAAGAATTGATTGTTCCCCAACTTTTATCAACA
GAAGAGGTTGATTGGATAAATGACTATCACACTGAAGTATTTGAGAAAGT
GGGAAGTTATTTGAGAGACAATAATAAAGCAAATGTTGTTGATTGGCTCA
AAAATGCCACATCACCTTTGGGCTAAAAGTATTGAAAATCTACTTTTAGT
GAATTTTAACGgtttttttgtgcaattttttaatttttacgtttattaaa
ttttaatgTCAACTTTAAGATAAGTTTTTAGTCATAGAAATTAGCAAAAT
ATATAAT
Run BLAST on NCBI

protein sequence of TCONS_00061046-protein

>TCONS_00061046-protein ID=TCONS_00061046-protein|Name=TCONS_00061046-protein|organism=Clytia hemisphaerica|type=polypeptide|length=220bp
METAKVLSTDMYLCDSGGQYLDGTTDVTRTIHLGTPTDHQKETYTRVLKG
HIQLARAVFPKGTRGHILDVLARAPLWEIGLEYAHGTGHGVGAFLNVHEG
PIGISPKNSEDPPLESGMFLSDEPGYYEDGSFGIRIENIIQVVEKKLKHN
YGNRGYLGFEVVTMAPLYKELIVPQLLSTEEVDWINDYHTEVFEKVGSYL
RDNNKANVVDWLKNATSPLG
Run BLAST on NCBI

transcript from alignment at scaffold_354:279343..289034+

Legend: exonfive_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00061046 ID=TCONS_00061046|Name=TCONS_00061046|organism=Clytia hemisphaerica|type=transcript|length=9692bp|location=Sequence derived from alignment at scaffold_354:279343..289034+ (Clytia hemisphaerica)
AATAACGCTAAGAAAGTTCAAATCTTAATTCAAACAGTTTtatgtttgtt
tatatttgatgttcgagaaaaaaatcttaacCAAACTAGAGGAGaggaat
atttttaactttagaTTTCAACGGGCAGATGATTGGCAGATTTGTCAGTG
GTTGTAATAAGAATATAATAAGAATATCAATatcaattttttctcaaatt
cagaGAATATTAACTTTGACTTTAAGATTTTAGACATGTCAAAATACTAC
CTTTAGAACGTCATGGTTTGCataaattttcaattctttttttaactCGT
TAGTTAAAGAACTCACTGATGGACTACTTTAACGACATACATTTTCGCGC
AGATTTCGAGAATTAAGTCCCAATGTAAATTTTGAAAGATCTTATCTGCG
AAATTCTATTCAACAAAATCGATAATACAATcagcgaaattaagtcccca
cgaaatttaatctccACAGAAATTTATACCATTAAAGTAAAAGTTGTAAT
TTCAATACTTCTTTTAATatacaaattaaaaatattacctatttgaaaaa
aattagggTCGTTCGCACTATAAGAACAATAAGCCAATTTTAGTATTTTC
AGTTTCCACCATTTACACTGTGTCCTCTTCCTCTTCATTCTCAGCTTCAT
AACCTTGATTCAAAGCATCATATCTTAATTGTCGTCCACCTCTTCTATAG
CTAGATTGGCTGTATTGATTGCCGCGTCTCTTAGAATATATAGGCTTCCT
AGCTATATGTCTTCCACCGAGAGCAGAAGAGGAGGATAGACTTGCATTTG
TCGGAAGTTGGGGTAGGAATCTTCTGTTAGGTAGAATTCCTTCTGTGCTT
GAATGTCTGCATAACAGTCGTTTGACAGACTATTGAAAGTTGGTCTGTTG
GCAGCACCATGATTTACAGACTTTGTTGTCAGCTTTCGACGTCCGATACA
CATATTCATTTTCATCGGTCGGAACCGGACAGacataaaacataagaaaa
aataactcaaaaatctacaggaaggaaaaataactcgagaatgtaaaaga
aaaaaaaacgagttaaaacacgaaataactcgaaactttaaaggaacgaa
aaaataactcgagaatctacaggaagcaaaataactcgaaaatttaaaag
aaggaATAAAAAACCGATTTGAAATTAAGAAGTAACCCCAGacatttgaa
ggaaaaaaaataactcggaaatttaatggaacgaaaaaataactcgagaa
tctacaggaagcaaaataactcgaaaatttaaaaggaTAAAATACGCGAG
TTATAACTCGGGATTTCCGAGCCTCCTTATTTAAGAGTTTCTTAGCTGAA
AGAATTTTTAGcgtaaaaaacttaatttttgcgagggattatatttcgcg
aaaaaggcgaaattcgcgaaaattcgcgaaatataatcccggCGAAAATT
TATCCCCTTAAGGTATGTTATCTTTGTTCATAATTTCCAGATACGTGATG
GTGGTGCACTCTGTGAATATCTTTGCTGGCTCGAGAAAAATGTAAGCTTG
ACTAATTATAGAGGTCCCCATTACACTAATAATGTTTCAAGACAAATGTA
AGTCTTGctaattgaaaaacatttttttcgtgCAATATTCTTAGAAAaga
ctacacgtttttctttttataaggaacacgtttataaggaactcgaggct
gaaaatggtccaaaaaataaggaatttttaaggaactgctcaggctgaga
ataagaaaacaagttttaaggaacagtaagagatggttatccaaacttag
cagctatgtaaataaggaactcgataaggaactttgaggctgaaattctc
tgtaaaaataaggaactcagaggctcagagcaaagttttaaggttcctta
taaaaaaaacaacgtgtatagTAAATGCATAACTCACCAATTCAATCTGG
CCCAGCCTTTGCGAGAAGTTACAATAATctcaaataataataatgacaGT
TTGTTATTTTGTTGCCAAATTCTTCTTATTGACGCCTATagtaatttctt
taattttgttaTTTCCTTCAGTTCAACACGAATATCAATGAAGCTGAGGC
AGCGGAAAAGCTAGATAAGCTTCGTAGGTATGGACTCCAAACCATCATTA
GCGAGTTATGTGTTTTCTTTAGCGGAGACGGATGTTTTTCTATAGCAACA
AAatacataagaacataatgcttcAATTGTTAAAAtatagaacaagttaa
gaacattttcaggctttatgaaattgttcaaaaataCTCAAGGAATtgta
aaattaagaacattttaagaatattaaaaacaagaaggcgaagtttttat
ttgacaaagGACGACAACACTCCTACAGTTCTCGATTATGCAATTTCgtt
ttttatccaaaaatgaaaatatatataactATTATTTTTCTACCTGACAA
TTTATGCAGCGAACAAGATAAATTTGTCAGCTTGAGTTTCGAAACTATAT
CGTCAATCGGACCAAATTGTGCAGTTATCCATTACAAGTAAGCAATAATT
TTATAACAAGATATGGTTCGGTATACACCTATTGAGACAGAAGTTCAAAT
CCAATTCTCTAACTGAACATCCCAATAAAGTAGAGAGGTAATTTTCAAGA
ACTGTTACCTTTGTCGTCAATAACCCCTCCCCTCTTCTCTCCGGTAAAAA
AAGAGCATCCTCCTAAAAGATTTTGAGCAGAGTGATATATCCAttagttt
tttggtttttacatggctattatttttatttcaaatatacAAGGCGCATA
GTTCACAAATCAtccaaaattttaatatttatttcttGCTCAATGAATAA
AACTACAATTTGCTGTTTTTAGACCAGAAATGGAGACAGCGAAAGTACTC
TCAACTGATATGTATCTTTGTGATTCTGGTGGCCAATATTTGTAAGTAAT
TAGGTTTCAGGGTAGAGGTTGGTACTAAACCAAAACTACCTCGAACCAAA
GTGAATGCTGTTCAAAACTCGAGCGAAGTATGTGAACaattcaaaaaata
gttttctaATCTCTTAAGTCAGTTTATTACAAGTATTTTGCTTGcttttt
gtttgtaattcttGAAGAAAATCGAAAAGTCTTGTTTCAGTCAAATaggg
ccctgagacgtctcagatgctGTTTTCAAAGTGTAGATCAGGAAGTCTCG
GACGAATAGTGCCGAATCCGTGCTACACTCGTTTCATCTCAGACACATAC
CATCATAATATGATAATCTTTGAAGAGTGTTAAAATTACGTATATATGTT
GTTTTTACCAGGGATGGCACAACAGACGTTACAAGGACCATACACTTAGG
TACTCCAACAGACCACCAAAAGgttctctttctttcttttcgcAAACATT
TAAAATTTGTCTAAAATATATTATTGATGGAACTTGAATGATTATGTGAA
GTCGAGATCCTAACCGAtccaaattttatttaatttgatagAATTTCAGT
TGCCATGCCCCACCCCTCGTTAACATCTTCTGAAAAACCGAAAGGGGTTC
GATCATTACAATTGGTCACTGAGGTTTGGGTCGGACTGTTTTTACCGCAC
TCGATtacttgaattttcaaaaagtgacaaGATTATGACTGGGAACCAGA
TTAAATAAAGAGCGTCATAATTTAATGTTTTAGGAAACGTATACGCGTGT
TTTGAAAGGCCACATCCAGCTAGCCCGTGCTGTATTTCCTAAAGGAACAA
GAGGGCACATATTAGATGTTCTAGCCCGTGCACCATTATGGGAGATTGGA
CTCGAGTATGCGCATGGGACTGGGCATGGAGTTGGTGCTTTCTTAAATGT
TCACGAAGGTAACCCTATGAGAGAACTATTTTATCATCTACAGTAAGTCT
GTTCCAACAAAGacTGTCTGTAAATTTTGATACATTGCTCTTGGTGTTCA
GATTGATATCTTTCTTAGATTGAAAGTTACGATCATTGAAAATGAATCTA
TTtgccaattttcgccattttttacCTACTTTGGAGGGATGTATCTTTTT
ACCTATTGCATTAGAATgatagaaatttgttctttaaAAATCTGTGTATT
GCCATTTACAGGACCCATCGGAATCAGTCCGAAGAACAGCGAGGATCCAC
CCTTAGAATCTGGCATGTTTTTATCTGACGAACCTGGTTATTATGAGGAC
GGTTCTTTCGGAATCCGAATTGAAAATATTATACAAGTTgtagagaaaaa
attaaaagtaagTCTTACAATCCTTGTACATCAAAGAGAGCTGCTTTTGT
Ttatagtttttggacctaccccggtggggtggaggtcctataaattcacc
tctgtccgtccgtccgtccgttcgttaccagcttttctcgagattgaatc
ataNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNaac
ggctaaaaaacgggttttttggactttgtgaaaaattggatcattaattt
tttctgattttttacatgaaagtagggtaccatcataggtaaaagatcgc
tcaagcagatttttgcaaaaaaatttatttggcttaaaaaacgcatgttt
atctataagaatcactattaataagcatacaccaatgttcttagtcaaat
tactcaatttttttaatgagatatatgttttttttttgctcatgagggct
tacttttaaagaatatgtgtgttagCCATGAAATTTTCGTTGCTTTGCgt
gttttttagaaaaactggccaaattcgatatttttttataagcacattat
caattacttaggtacgttagcttttctcgagattggctctttcattcttc
atgactttttgcacaaagatgcataaccaTAAACtgtcgaatgtgacgga
gcccaatttttgaaaaaaaaaatgttttagggcaaatttgggccaaaaac
ggctaaacaacgggttttttggactttgtagaaaattggatcattgattt
tttctgattttttgcatgaaagtaggttaccatcataggtaaaagatggc
ttagggagatttttgcaaaaaagatttgttggctcaaaaaacgcatgtcg
ccgtgtcaattcaagacagccttaagtccattttttccattttgagataa
ttgactttaaaggttgAGATGTGTTGGGNggaggtcctataaattcacct
ctgtccgtccgtccgtccgttcgttaccagcttttctcgagattgaatca
taggaatcatctGATTTTTGgaacaaaggtgcaaaatggtagtggccaaa
atgtgacggagcccgattttcgaaaaaatatttttttgggccaatttggg
ctaaaaaacggctaaaaaacgggttttttggactttgtgaaaaattggat
cattaattttttctgattttttacatgaaagtagggtacNNNNNNNNNNG
aaatttgcactaaaatttaggacttaaggctgtttatggttgatatatta
tggaacattctaaattcttattttttttgaattgcaaaatacacctattt
cccattagaattctgtggacttaaggccgtttttggaaagcgtgcatgct
gaaatagggggttatggtctttagtcaattttcgaaaaaatggacttaag
tctgtcttgaattgacacggcgatgtttatctataagaatcactattaat
aagcatacattaatattcttagtcaaattactcaatttttttatgagaca
gatgttttttttctcatgagggcttacttttgaagcaattgtgtgtttag
acatgaaattttcgttacttggcgtgtttttatagaaaaactggccaaat
tcgatatttttttataagcacattatcaattacttaggtattagcttttc
tcgagattggctctttcattctttatgattttttgcacaaagatgcataa
ctataaaccttcgaatgtgacggagcctgattttcgaaaaaaaatgtttt
tgggcaaaaatggattttttggactttgtgaaatattggatcgttgattt
tttgcatgaaagtagctAAAAGATgtgtcaagcagatttttgtaaaaaaa
aacttttcagctcaaaaaacgcatctttatctataagaatcaccattaat
aagcatacatcaatgttcttagccaaattactcaattttttgatgagata
gatgttttttgtcttgaatatgaaagaatatttcaagagcatgaaatttt
ggtttctaaacgtttttttttataagaaacaaacgactaattttaataag
tcgtcactatttgtgttctgaatgattgtttaacgttcatatgctcacgt
agatatcaattatatatgtgttaaatgcccaactaggtaggtccataaaa
gtatcacttgtcttCTATTATTATCACTGACTGTTCAGCCAAGGTATCTT
CTAGtggaattagtatatgtaatcacatgataacgagtgcaattcgaata
taattgcacgagtgatttttttgttattaattttccgagtccgaaaggac
gaggaaaNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
gtgcaattttcgaattgtacgagttattatgtgattacgagctaatcgca
caatggcttccACTACTTTTtaccagttaggaaagtaaattagtactagt
aatcgtcagtaaacattcgaaaacctccttttttcttttgtttaaaaaga
aaacattgcagtgtaatttttctttgttttcaattaaaagaagctactgt
aacgtaaaatttctttgttcttttttatattgaagaaaaaaaatgtcttt
gttttttattatatattaaaaaaaagtctccgtctgacacaggacttggg
agagaaaagaataaggggacaaaagtgtccccccgccgaagagtgcaaaa
agtggtaatagtgcaattaacgattaattgcactcctctaaaccaatcag
attcgagtaattttgcacggctgacgattacagaaattacactgagagtt
ttatattttctcttctctctgtgtctttcttttattgttgtttattgatt
tcctttctcacaaaatgaatttcgaatgcaattaaaacgttcgatgcaaa
aaaatgtaaaaaaaaacattaaaatcatttttgtaaacattggcgcagca
ttgaagagtgtgattaacgattaattgctctctacagaatgcaattaacg
attaattgctctctttgagggcgtgccaaataagaaaaaataacccatcg
tgcgattaaccGTTAAAGCATTCACCATACTATAACTGGCTAAAAGGTAA
AGAGTTTTTGTACCAATAGCTAACACTTTTTAGTAGGAGCGAATCGTCTC
TCatcagtacacgtttttttttttattagaacacctaaaatttggctgag
cctggatgtgcttatttttttagcaattttcagcctaaaatgttcttaaa
tgcNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNgaggctgggcatgttcttaagatgttcttaatttttcgacgaatttca
gcctatatgttcttataaactaggttctaataaaaaaaaaaacgtgtatt
attgGGAGACTTCTGTGTTTAACTAGCAGCGGGCTAATAACGATTTATTA
TCCACGATAACGATGTATTTTCTTGTTCATTTCAGCATAATTATGGTAAT
AGAGGTTACTTAGGATTCGAAGTTGTCACAATGGTAAGGTTCATTTCATT
TCTACTATACCAacataattgtttttattaacGAATGCCACCCAGCTTTA
GTATGTTTCTATGGTTCGCTCGGACGTGAGTAACCTCTGGAGGAACTATA
AGTCAAATAGTGCGACACTTTAATAGTTTAATCCTGGCAAGAGCTGAGAA
AATTACATTTAAAGGTGCGGAGACTATATGAACAATATTTGcagaagaac
attttaaaacgaagtatttttttttctttttaggcaCCCCTTTACAAAGA
ATTGATTGTTCCCCAACTTTTATCAACAGAAGAGGTAActaaaagatatt
tctttatttttttaaccaTAGCTTTGTACACAAATTACCTGGGTAAGAGA
GTaccccttttttataagaacaataaggctcatacttgccaaaaaataag
aattttgaaaaaataaaaaataataaaggttgggtataaatcctgaaaaa
tctcaatttcaCCTCATTAATAAGAACATTATAAAGGTCAGCCACTGCCC
AAAAGACCTTTGTTAAAGTTCCAAACATATAGAAATAGGTGAAACTTAGA
AATCGACTCCATTAAAGAAAATATCTTCTGTATTTTCCAATTGGTGAAAA
TCTGTGATTTCACCCACGTATGCTCTCTGAGCATTTCGCACACAATTCTT
CTTAGAAATATCTGTTTTTTATACATATCTAGCAAATTCTACAACAATTA
CAAAACAAATTAAAACCCCCAACGGAATAAATAACAAAACAACAGATAGT
TACAAAACATTGAAGCGATAAAAGACCATAAACTATGTACGATAAATGAA
TTAATTAGATAAAAGTATTCTCTTGATATTTACAAATAAACTGACGGACA
GCGGCAGTAACAAACATGATCAGAGCAATTTAAGGcttaaagtgccaaaa
aaataagaacagtcgagcCCTGTCAAaagtttactggttcttataaaaaa
tgatttAGGGTTTTAGTTCTTGTTTCAGCAGAAGGTAGTTTTTTGGATGG
AAAACGTTTTCAGTTTACATTTTGGAATTAGCCATTATTTTGATAGAaag
cttcttataaaaaaactttccaTTCCATCATCTCATTTTAGGTTGATTGG
ATAAATGACTATCACACTGAAGTATTTGAGAAAGTGGGAAGTTATTTGAG
AGACAATAATAAAGCAAATGTTGTTGATTGGCTCAAAAATGCCACATCAC
CTTTGGGCTAAAAGTATTGAAAATCTACTTTTAGTGAATTTTAACGgttt
ttttgtgcaattttttaatttttacgtttattaaattttaatgTCAACTT
TAAGATAAGTTTTTAGTCATAGAAATTAGCAAAATATATAAT

Coding sequence (CDS) from alignment at scaffold_354:279343..289034+

>TCONS_00061046 ID=TCONS_00061046|Name=TCONS_00061046|organism=Clytia hemisphaerica|type=CDS|length=4641bp|location=Sequence derived from alignment at scaffold_354:279343..289034+ (Clytia hemisphaerica)
ATGGAGACAGCGAAAGTACTCTCAACTGATATGTATCTTTGTGATTCTGG
TGGCCAATATTTGGATGGCACAACAGACGTTACAAGGACCATACACTTAG
GTACTCCAACAGACCACCAAAAGGAAACGTATACGCGTGTTTTGAAAGGC
CACATCCAGCTAGCCCGTGCTGTATTTCCTAAAGGAACAAGAGGGCACAT
ATTAGATGTTCTAGCCCGTGCACCATTATGGGAGATTGGACTCGAGTATG
CGCATGGGACTGGGCATGGAGTTGGTGCTTTCTTAAATGTTCACGAAGGA
CCCATCGGAATCAGTCCGAAGAACAGCGAGGATCCACCCTTAGAATCTGG
CATGTTTTTATCTGACGAACCTGGTTATTATGAGGACGGTTCTTTCGGAA
TCCGAATTGAAAATATTATACAAGTTgtagagaaaaaattaaaaCATAAT
TATGGTAATAGAGGTTACTTAGGATTCGAAGTTGTCACAATGgcaCCCCT
TTACAAAGAATTGATTGTTCCCCAACTTTTATCAACAGAAGAGGTTGATT
GGATAAATGACTATCACACTGAAGTATTTGAGAAAGTGGGAAGTTATTTG
AGAGACAATAATAAAGCAAATGTTGTTGATTGGCTCAAAAATGCCACATC
ACCTTTGGGCTAAATGGAGACAGCGAAAGTACTCTCAACTGATATGTATC
TTTGTGATTCTGGTGGCCAATATTTGGATGGCACAACAGACGTTACAAGG
ACCATACACTTAGGTACTCCAACAGACCACCAAAAGGAAACGTATACGCG
TGTTTTGAAAGGCCACATCCAGCTAGCCCGTGCTGTATTTCCTAAAGGAA
CAAGAGGGCACATATTAGATGTTCTAGCCCGTGCACCATTATGGGAGATT
GGACTCGAGTATGCGCATGGGACTGGGCATGGAGTTGGTGCTTTCTTAAA
TGTTCACGAAGGACCCATCGGAATCAGTCCGAAGAACAGCGAGGATCCAC
CCTTAGAATCTGGCATGTTTTTATCTGACGAACCTGGTTATTATGAGGAC
GGTTCTTTCGGAATCCGAATTGAAAATATTATACAAGTTgtagagaaaaa
attaaaaCATAATTATGGTAATAGAGGTTACTTAGGATTCGAAGTTGTCA
CAATGgcaCCCCTTTACAAAGAATTGATTGTTCCCCAACTTTTATCAACA
GAAGAGGTTGATTGGATAAATGACTATCACACTGAAGTATTTGAGAAAGT
GGGAAGTTATTTGAGAGACAATAATAAAGCAAATGTTGTTGATTGGCTCA
AAAATGCCACATCACCTTTGGGCTAAATGGAGACAGCGAAAGTACTCTCA
ACTGATATGTATCTTTGTGATTCTGGTGGCCAATATTTGGATGGCACAAC
AGACGTTACAAGGACCATACACTTAGGTACTCCAACAGACCACCAAAAGG
AAACGTATACGCGTGTTTTGAAAGGCCACATCCAGCTAGCCCGTGCTGTA
TTTCCTAAAGGAACAAGAGGGCACATATTAGATGTTCTAGCCCGTGCACC
ATTATGGGAGATTGGACTCGAGTATGCGCATGGGACTGGGCATGGAGTTG
GTGCTTTCTTAAATGTTCACGAAGGACCCATCGGAATCAGTCCGAAGAAC
AGCGAGGATCCACCCTTAGAATCTGGCATGTTTTTATCTGACGAACCTGG
TTATTATGAGGACGGTTCTTTCGGAATCCGAATTGAAAATATTATACAAG
TTgtagagaaaaaattaaaaCATAATTATGGTAATAGAGGTTACTTAGGA
TTCGAAGTTGTCACAATGgcaCCCCTTTACAAAGAATTGATTGTTCCCCA
ACTTTTATCAACAGAAGAGGTTGATTGGATAAATGACTATCACACTGAAG
TATTTGAGAAAGTGGGAAGTTATTTGAGAGACAATAATAAAGCAAATGTT
GTTGATTGGCTCAAAAATGCCACATCACCTTTGGGCTAAATGGAGACAGC
GAAAGTACTCTCAACTGATATGTATCTTTGTGATTCTGGTGGCCAATATT
TGGATGGCACAACAGACGTTACAAGGACCATACACTTAGGTACTCCAACA
GACCACCAAAAGGAAACGTATACGCGTGTTTTGAAAGGCCACATCCAGCT
AGCCCGTGCTGTATTTCCTAAAGGAACAAGAGGGCACATATTAGATGTTC
TAGCCCGTGCACCATTATGGGAGATTGGACTCGAGTATGCGCATGGGACT
GGGCATGGAGTTGGTGCTTTCTTAAATGTTCACGAAGGACCCATCGGAAT
CAGTCCGAAGAACAGCGAGGATCCACCCTTAGAATCTGGCATGTTTTTAT
CTGACGAACCTGGTTATTATGAGGACGGTTCTTTCGGAATCCGAATTGAA
AATATTATACAAGTTgtagagaaaaaattaaaaCATAATTATGGTAATAG
AGGTTACTTAGGATTCGAAGTTGTCACAATGgcaCCCCTTTACAAAGAAT
TGATTGTTCCCCAACTTTTATCAACAGAAGAGGTTGATTGGATAAATGAC
TATCACACTGAAGTATTTGAGAAAGTGGGAAGTTATTTGAGAGACAATAA
TAAAGCAAATGTTGTTGATTGGCTCAAAAATGCCACATCACCTTTGGGCT
AAATGGAGACAGCGAAAGTACTCTCAACTGATATGTATCTTTGTGATTCT
GGTGGCCAATATTTGGATGGCACAACAGACGTTACAAGGACCATACACTT
AGGTACTCCAACAGACCACCAAAAGGAAACGTATACGCGTGTTTTGAAAG
GCCACATCCAGCTAGCCCGTGCTGTATTTCCTAAAGGAACAAGAGGGCAC
ATATTAGATGTTCTAGCCCGTGCACCATTATGGGAGATTGGACTCGAGTA
TGCGCATGGGACTGGGCATGGAGTTGGTGCTTTCTTAAATGTTCACGAAG
GACCCATCGGAATCAGTCCGAAGAACAGCGAGGATCCACCCTTAGAATCT
GGCATGTTTTTATCTGACGAACCTGGTTATTATGAGGACGGTTCTTTCGG
AATCCGAATTGAAAATATTATACAAGTTgtagagaaaaaattaaaaCATA
ATTATGGTAATAGAGGTTACTTAGGATTCGAAGTTGTCACAATGgcaCCC
CTTTACAAAGAATTGATTGTTCCCCAACTTTTATCAACAGAAGAGGTTGA
TTGGATAAATGACTATCACACTGAAGTATTTGAGAAAGTGGGAAGTTATT
TGAGAGACAATAATAAAGCAAATGTTGTTGATTGGCTCAAAAATGCCACA
TCACCTTTGGGCTAAATGGAGACAGCGAAAGTACTCTCAACTGATATGTA
TCTTTGTGATTCTGGTGGCCAATATTTGGATGGCACAACAGACGTTACAA
GGACCATACACTTAGGTACTCCAACAGACCACCAAAAGGAAACGTATACG
CGTGTTTTGAAAGGCCACATCCAGCTAGCCCGTGCTGTATTTCCTAAAGG
AACAAGAGGGCACATATTAGATGTTCTAGCCCGTGCACCATTATGGGAGA
TTGGACTCGAGTATGCGCATGGGACTGGGCATGGAGTTGGTGCTTTCTTA
AATGTTCACGAAGGACCCATCGGAATCAGTCCGAAGAACAGCGAGGATCC
ACCCTTAGAATCTGGCATGTTTTTATCTGACGAACCTGGTTATTATGAGG
ACGGTTCTTTCGGAATCCGAATTGAAAATATTATACAAGTTgtagagaaa
aaattaaaaCATAATTATGGTAATAGAGGTTACTTAGGATTCGAAGTTGT
CACAATGgcaCCCCTTTACAAAGAATTGATTGTTCCCCAACTTTTATCAA
CAGAAGAGGTTGATTGGATAAATGACTATCACACTGAAGTATTTGAGAAA
GTGGGAAGTTATTTGAGAGACAATAATAAAGCAAATGTTGTTGATTGGCT
CAAAAATGCCACATCACCTTTGGGCTAAATGGAGACAGCGAAAGTACTCT
CAACTGATATGTATCTTTGTGATTCTGGTGGCCAATATTTGGATGGCACA
ACAGACGTTACAAGGACCATACACTTAGGTACTCCAACAGACCACCAAAA
GGAAACGTATACGCGTGTTTTGAAAGGCCACATCCAGCTAGCCCGTGCTG
TATTTCCTAAAGGAACAAGAGGGCACATATTAGATGTTCTAGCCCGTGCA
CCATTATGGGAGATTGGACTCGAGTATGCGCATGGGACTGGGCATGGAGT
TGGTGCTTTCTTAAATGTTCACGAAGGACCCATCGGAATCAGTCCGAAGA
ACAGCGAGGATCCACCCTTAGAATCTGGCATGTTTTTATCTGACGAACCT
GGTTATTATGAGGACGGTTCTTTCGGAATCCGAATTGAAAATATTATACA
AGTTgtagagaaaaaattaaaaCATAATTATGGTAATAGAGGTTACTTAG
GATTCGAAGTTGTCACAATGgcaCCCCTTTACAAAGAATTGATTGTTCCC
CAACTTTTATCAACAGAAGAGGTTGATTGGATAAATGACTATCACACTGA
AGTATTTGAGAAAGTGGGAAGTTATTTGAGAGACAATAATAAAGCAAATG
TTGTTGATTGGCTCAAAAATGCCACATCACCTTTGGGCTAA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_038322XLOC_038322Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00061046-proteinTCONS_00061046-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00061046-exon-scaffold_354-1491911889:279343..279495TCONS_00061046-exon-scaffold_354-1491911889:279343..279495Clytia hemisphaericaexon
TCONS_00061046-exon-scaffold_354-1510915933:279343..279495TCONS_00061046-exon-scaffold_354-1510915933:279343..279495Clytia hemisphaericaexon
TCONS_00061046-exon-scaffold_354-1575043694:279343..279495TCONS_00061046-exon-scaffold_354-1575043694:279343..279495Clytia hemisphaericaexon
TCONS_00061046-exon-scaffold_354-1491911889:279987..280154TCONS_00061046-exon-scaffold_354-1491911889:279987..280154Clytia hemisphaericaexon
TCONS_00061046-exon-scaffold_354-1510915933:279987..280154TCONS_00061046-exon-scaffold_354-1510915933:279987..280154Clytia hemisphaericaexon
TCONS_00061046-exon-scaffold_354-1575043694:279987..280154TCONS_00061046-exon-scaffold_354-1575043694:279987..280154Clytia hemisphaericaexon
TCONS_00061046-exon-scaffold_354-1491911889:280833..280883TCONS_00061046-exon-scaffold_354-1491911889:280833..280883Clytia hemisphaericaexon
TCONS_00061046-exon-scaffold_354-1510915933:280833..280883TCONS_00061046-exon-scaffold_354-1510915933:280833..280883Clytia hemisphaericaexon
TCONS_00061046-exon-scaffold_354-1575043694:280833..280883TCONS_00061046-exon-scaffold_354-1575043694:280833..280883Clytia hemisphaericaexon
TCONS_00061046-exon-scaffold_354-1491911889:281414..281469TCONS_00061046-exon-scaffold_354-1491911889:281414..281469Clytia hemisphaericaexon
TCONS_00061046-exon-scaffold_354-1510915933:281414..281469TCONS_00061046-exon-scaffold_354-1510915933:281414..281469Clytia hemisphaericaexon
TCONS_00061046-exon-scaffold_354-1575043694:281414..281469TCONS_00061046-exon-scaffold_354-1575043694:281414..281469Clytia hemisphaericaexon
TCONS_00061046-exon-scaffold_354-1491911889:281802..281879TCONS_00061046-exon-scaffold_354-1491911889:281802..281879Clytia hemisphaericaexon
TCONS_00061046-exon-scaffold_354-1510915933:281802..281879TCONS_00061046-exon-scaffold_354-1510915933:281802..281879Clytia hemisphaericaexon
TCONS_00061046-exon-scaffold_354-1575043694:281802..281879TCONS_00061046-exon-scaffold_354-1575043694:281802..281879Clytia hemisphaericaexon
TCONS_00061046-exon-scaffold_354-1491911889:282215..282283TCONS_00061046-exon-scaffold_354-1491911889:282215..282283Clytia hemisphaericaexon
TCONS_00061046-exon-scaffold_354-1510915933:282215..282283TCONS_00061046-exon-scaffold_354-1510915933:282215..282283Clytia hemisphaericaexon
TCONS_00061046-exon-scaffold_354-1575043694:282215..282283TCONS_00061046-exon-scaffold_354-1575043694:282215..282283Clytia hemisphaericaexon
TCONS_00061046-exon-scaffold_354-1491911889:282654..282714TCONS_00061046-exon-scaffold_354-1491911889:282654..282714Clytia hemisphaericaexon
TCONS_00061046-exon-scaffold_354-1510915933:282654..282714TCONS_00061046-exon-scaffold_354-1510915933:282654..282714Clytia hemisphaericaexon
TCONS_00061046-exon-scaffold_354-1575043694:282654..282714TCONS_00061046-exon-scaffold_354-1575043694:282654..282714Clytia hemisphaericaexon
TCONS_00061046-exon-scaffold_354-1491911889:283026..283200TCONS_00061046-exon-scaffold_354-1491911889:283026..283200Clytia hemisphaericaexon
TCONS_00061046-exon-scaffold_354-1510915933:283026..283200TCONS_00061046-exon-scaffold_354-1510915933:283026..283200Clytia hemisphaericaexon
TCONS_00061046-exon-scaffold_354-1575043694:283026..283200TCONS_00061046-exon-scaffold_354-1575043694:283026..283200Clytia hemisphaericaexon
TCONS_00061046-exon-scaffold_354-1491911889:283454..283599TCONS_00061046-exon-scaffold_354-1491911889:283454..283599Clytia hemisphaericaexon
TCONS_00061046-exon-scaffold_354-1510915933:283454..283599TCONS_00061046-exon-scaffold_354-1510915933:283454..283599Clytia hemisphaericaexon
TCONS_00061046-exon-scaffold_354-1575043694:283454..283599TCONS_00061046-exon-scaffold_354-1575043694:283454..283599Clytia hemisphaericaexon
TCONS_00061046-exon-scaffold_354-1491911889:287628..287675TCONS_00061046-exon-scaffold_354-1491911889:287628..287675Clytia hemisphaericaexon
TCONS_00061046-exon-scaffold_354-1510915933:287628..287675TCONS_00061046-exon-scaffold_354-1510915933:287628..287675Clytia hemisphaericaexon
TCONS_00061046-exon-scaffold_354-1575043694:287628..287675TCONS_00061046-exon-scaffold_354-1575043694:287628..287675Clytia hemisphaericaexon
TCONS_00061046-exon-scaffold_354-1491911889:287926..287976TCONS_00061046-exon-scaffold_354-1491911889:287926..287976Clytia hemisphaericaexon
TCONS_00061046-exon-scaffold_354-1510915933:287926..287976TCONS_00061046-exon-scaffold_354-1510915933:287926..287976Clytia hemisphaericaexon
TCONS_00061046-exon-scaffold_354-1575043694:287926..287976TCONS_00061046-exon-scaffold_354-1575043694:287926..287976Clytia hemisphaericaexon
TCONS_00061046-exon-scaffold_354-1491911889:288784..289034TCONS_00061046-exon-scaffold_354-1491911889:288784..289034Clytia hemisphaericaexon
TCONS_00061046-exon-scaffold_354-1510915933:288784..289034TCONS_00061046-exon-scaffold_354-1510915933:288784..289034Clytia hemisphaericaexon
TCONS_00061046-exon-scaffold_354-1575043694:288784..289034TCONS_00061046-exon-scaffold_354-1575043694:288784..289034Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_354supercontigscaffold_354:279343..289034 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Sort Descending | Sort Ascending | Only Non-Zero Values | Tile/Chart | Reset | Show/Hide Values

Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
9.64615	8.74278	6.98053	8.11504	3.48145	0.737216	4.36183	5.32786	8.49072	8.93851	11.3543	5.32417	5.24888	5.76619	11.2199	10.062	10.3839	9.64253	4.76945	4.94121	6.08325	6.34751	10.4631	11.9777	7.94383	9.43563	9.3318	7.97095	10.9448	9.91187
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
TermDefinition
IPR032416Peptidase_M24_C
IPR000994Pept_M24
Blast
[Close]
BLAST of TCONS_00061046 vs. Swiss-Prot (Human)
Match: XPP1 (Xaa-Pro aminopeptidase 1 OS=Homo sapiens GN=XPNPEP1 PE=1 SV=3)

HSP 1 Score: 320.087 bits (819), Expect = 5.134e-102
Identity = 154/286 (53.85%), Postives = 199/286 (69.58%), Query Frame = 1 
Query:  322 IRDGGALCEYLCWLEKNF-NTNINEAEAAEKLDKLRSEQDKFVSLSFETISSIGPNCAVIHYKPEMETAKVLSTD-MYLCDSGGQYLDGTTDVTRTIHLGTPTDHQKETYTRVLKGHIQLARAVFPKGTRGHILDVLARAPLWEIGLEYAHGTGHGVGAFLNVHEGPIGISPKNSEDPPLESGMFLSDEPGYYEDGSFGIRIENIIQVVEKKLKHNYGNRGYLGFEVVTMAPLYKELIVPQLLSTEEVDWINDYHTEVFEKVGSYLRDNNKANVVDWLKNATSPLG 1173
            I+D  ALCE   WLEK      + E  AA+K ++ R +Q  FV LSF TISS GPN A+IHY P  ET + LS D +YL DSG QY DGTTDVTRT+H GTPT ++KE +T VLKGHI ++ AVFP GT+GH+LD  AR+ LW+ GL+Y HGTGHGVG+FLNVHEGP GIS K   D PLE+GM ++DEPGYYEDG+FGIRIEN++ VV  K K+N+ NRG L FE +T+ P+  ++I    L+ +E DW+N+YH    + +G  L+   +   ++WL   T P+ 
Sbjct:  335 IKDAVALCELFNWLEKEVPKGGVTEISAADKAEEFRRQQADFVDLSFPTISSTGPNGAIIHYAPVPETNRTLSLDEVYLIDSGAQYKDGTTDVTRTMHFGTPTAYEKECFTYVLKGHIAVSAAVFPTGTKGHLLDSFARSALWDSGLDYLHGTGHGVGSFLNVHEGPCGISYKTFSDEPLEAGMIVTDEPGYYEDGAFGIRIENVVLVVPVKTKYNFNNRGSLTFEPLTLVPIQTKMIDVDSLTDKECDWLNNYHLTCRDVIGKELQKQGRQEALEWLIRETQPIS 620
The following BLAST results are available for this feature:
BLAST of TCONS_00061046 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
XPP15.134e-10253.85Xaa-Pro aminopeptidase 1 OS=Homo sapiens GN=XPNPEP... [more]
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