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Overview
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00061066 ID=TCONS_00061066|Name=TCONS_00061066|organism=Clytia hemisphaerica|type=transcript|length=1974bpRun BLAST on NCBI protein sequence of TCONS_00061066-protein >TCONS_00061066-protein ID=TCONS_00061066-protein|Name=TCONS_00061066-protein|organism=Clytia hemisphaerica|type=polypeptide|length=298bp MKATLPGGLGERKTVAVKIPKENAKRQDLLLELAMLKHIGHHKHIINFLGRun BLAST on NCBI transcript from alignment at scaffold_354:388357..393210+ Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.>TCONS_00061066 ID=TCONS_00061066|Name=TCONS_00061066|organism=Clytia hemisphaerica|type=transcript|length=4854bp|location=Sequence derived from alignment at scaffold_354:388357..393210+ (Clytia hemisphaerica) Coding sequence (CDS) from alignment at scaffold_354:388357..393210+ >TCONS_00061066 ID=TCONS_00061066|Name=TCONS_00061066|organism=Clytia hemisphaerica|type=CDS|length=6279bp|location=Sequence derived from alignment at scaffold_354:388357..393210+ (Clytia hemisphaerica) Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Position
The following features are aligned
Expression
Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Values :
GrOo_1 GrOo_2 FGOo_1 FGOo_2 EG_1 EG_2 P1_1 P1_2 P2_1 P2_2 P3_1 P3_2 PoPr_1 PoPr_2 St_1 St_2 GO_1 GO_2 PH_1 PH_2 BMF_1 BMF_2 MMF_1 MMF_2 M_1 M_2 GEC_1 GEC_2 GEN_1 GEN_2
Annotated Terms
The following terms have been associated with this transcript:
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Blast
BLAST of TCONS_00061066 vs. Swiss-Prot (Human)
Match: FGFR3 (Fibroblast growth factor receptor 3 OS=Homo sapiens GN=FGFR3 PE=1 SV=1) HSP 1 Score: 330.487 bits (846), Expect = 3.071e-101 Identity = 178/417 (42.69%), Postives = 260/417 (62.35%), Query Frame = 1
Query: 214 IESPRINILKVVLIALGAGLIFGISIIC--TVCRLIKLRGDKQRALPVEEIGLVEIHRND----QQGVRHEENVYIIDSSPAIVQAK---KRNPKRTNEELYHDPQVLLSSVHPKWEVNRKSLIISQTLGSGAFGIVMKATLPGGLGERK----TVAVKIPKENAKRQDL---LLELAMLKHIGHHKHIINFLGCCTEMDPIYIIHEYAPYGNLRMFLRSKRPLAMD--------QQPFLTTKNLISFSSQVAQGMEFLASKMCIHRDLAARNVLLGEDYVIKIADFGLARSLNNTDYYQKTTNGRVSVKWVAIEALLDRVYSTQSDIWVYGVLLWEIFTLGGTPYPRIPVQDLYKVLKDGYRTKRPKNCPPQIYEIMGKCWNEKPSKRPSFSELVAHMESLLDESTSDDIFEFKSP 1392
+E+ + +++ G G I ++ T+CRL R+ P + +G +H+ ++ V E N + ++P + A+ P N P PKWE++R L + + LG G FG V+ A G +R TVAVK+ K++A +DL + E+ M+K IG HK+IIN LG CT+ P+Y++ EYA GNLR FLR++RP +D + LT K+L+S + QVA+GME+LAS+ CIHRDLAARNVL+ ED V+KIADFGLAR ++N DYY+KTTNGR+ VKW+A EAL DRVY+ QSD+W +GVLLWEIFTLGG+PYP IPV++L+K+LK+G+R +P NC +Y IM +CW+ PS+RP+F +LV ++ +L +++D+ + +P
Sbjct: 364 VEADEAGSVYAGILSYGVGFFLFILVVAAVTLCRL--------RSPPKKGLGSPTVHKISRFPLKRQVSLESNASMSSNTPLVRIARLSSGEGPTLANVSELELP------ADPKWELSRARLTLGKPLGEGCFGQVVMAEAIGIDKDRAAKPVTVAVKMLKDDATDKDLSDLVSEMEMMKMIGKHKNIINLLGACTQGGPLYVLVEYAAKGNLREFLRARRPPGLDYSFDTCKPPEEQLTFKDLVSCAYQVARGMEYLASQKCIHRDLAARNVLVTEDNVMKIADFGLARDVHNLDYYKKTTNGRLPVKWMAPEALFDRVYTHQSDVWSFGVLLWEIFTLGGSPYPGIPVEELFKLLKEGHRMDKPANCTHDLYMIMRECWHAAPSQRPTFKQLVEDLDRVLTVTSTDEYLDLSAP 766 The following BLAST results are available for this feature:
BLAST of TCONS_00061066 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens)) Total hits: 1
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