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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00061067 ID=TCONS_00061067|Name=TCONS_00061067|organism=Clytia hemisphaerica|type=transcript|length=1409bp
attatatattttgattgCGCCATTCTTTATTAATGTCATTTATGTGTATA
TTGGTTGGGTTTATTGGACGAAAAGGACAAGGATAGtaagaaaaagagaa
atagaAAAGCTTCTGGCTCTGAAGATGATTTCTATAAAATGACCACAAGC
CCTCGAGGCATTTGCCTTATATTCAATAATACATTTGAAAAACCACGCGT
TGTCAAAGATTCTGATGGCAGAATTCTTCCCAAAAGAGATGGCACTCATA
TAGATGTTGAAGCCctgaaaaatgtattttcttggTTGAAATTCATTGCT
GAGCCGTACCAAGACTTTGATAAAAAGAACATGTTGCAGATCCTTGGGAA
ATATCGGGCTGATACGAGAATGCGAACTTACGATTGTTTCGTGTGCTGTA
TTTTATCGCATGGCTTCGAAAAAGGAGTTTATTGTGCTGAGGGGGAAAAG
ATCGATTTTTCAGAGATAAGATCTTACTTTACTGCAGAAAATTGTCAAAC
GTTAATTGGTAAACCGAAACTGTTTTTAGTTCCTGCATACCAGGGGCTAA
GAAACCAAAAAGTTGTCTATATTGATGTATTTAAAGAAACGGAGAAGGAG
TGGTacgaaaacaacaaaataattttagcaaacaaacCAACATTAAATCC
TTCCATTCTCGAAGTAAGGAAtagaaaagttattttcataGATTCACCAC
CGAATACCAAAATTGCTAATTCAAAAGAAGAACAAGTTAACAACGAAAAT
AACATTTCCACATCATCATGTTTTCCACAGTCGATTTCAAACGAAGctga
tatcaatttttttgttggAGCCACCCCAGGGACCGTATCTTTACGAGTGG
CAGATGAAGGCACTTGGTTTGTTCAAGAAGTAAAGAAAGTTTTCATCAAG
TATGCAGAGAATAAACCATGGTCATTCTTACgacaaaaaatcaataaaaa
tatttccgaGAAATGTTTCGATGGAGTGAAAATGATGTCCGATGGCGGGT
TGGACACACTTACTAAAGAAATTAATTTCAACCCTGGCAAACCGTAATCT
AATTAAtgtgaatacaccttttcgaccgtagccgctaaTATGCTgcgcat
ttttttgtccgttttacgagcctaaaaccgtcccagtctttcgCACcgaa
agacaatagaaaaatgttttaaaaaaaggattggatcaagTTTAGGGGGA
TGATTAAATAATCACGTACCTGACCGCGtgactacggtcaaaaaggtgta
ttcgcGTCCGACTGTTTCcataatacactcttctcgagatgcataaattt
attgttgtttaaagggacattaaagtagtaaaatgtaaacattgcgcgaa
ccacgtgtcattaaagagaacaattaaaatcacgtgtccaaaacaaactt
gtaaaacaa Run BLAST on NCBI protein sequence of TCONS_00061067-protein >TCONS_00061067-protein ID=TCONS_00061067-protein|Name=TCONS_00061067-protein|organism=Clytia hemisphaerica|type=polypeptide|length=302bp
MTTSPRGICLIFNNTFEKPRVVKDSDGRILPKRDGTHIDVEALKNVFSWL
KFIAEPYQDFDKKNMLQILGKYRADTRMRTYDCFVCCILSHGFEKGVYCA
EGEKIDFSEIRSYFTAENCQTLIGKPKLFLVPAYQGLRNQKVVYIDVFKE
TEKEWYENNKIILANKPTLNPSILEVRNRKVIFIDSPPNTKIANSKEEQV
NNENNISTSSCFPQSISNEADINFFVGATPGTVSLRVADEGTWFVQEVKK
VFIKYAENKPWSFLRQKINKNISEKCFDGVKMMSDGGLDTLTKEINFNPG
KP Run BLAST on NCBI transcript from alignment at scaffold_354:396388..398233+ Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00061067 ID=TCONS_00061067|Name=TCONS_00061067|organism=Clytia hemisphaerica|type=transcript|length=1846bp|location=Sequence derived from alignment at scaffold_354:396388..398233+ (Clytia hemisphaerica)
attatatattttgattgCGCCATTCTTTATTAATGTCATTTATGTGTATA
TTGGTTGGGTTTATTGGACGAAAAGGACAAGGATAGtaagaaaaagagaa
atagaAAAGCTTCTGGCTCTGAAGATGATTTCTATAAAATGACCACAAGC
CCTCGAGGCATTTGCCTTATATTCAATAATACATTTGAAAAACCACGCGT
TGTCAAAGATTCTGATGGCAGAATTCTTCCCAAAAGAGATGGCACTCATA
TAGATGTTGAAGCCctgaaaaatgtattttcttggTTGAAATTCATTGCT
GAGCCGTACCAAGACTTTGATAAAAAGAACATGTTGCAGATCCTTGGGAA
ATATCGGGCTGATACGAGAATGCGAACTTACGATTGTTTCGTGTGCTGTA
TTTTATCGCATGGCTTCGAAAAAGGAGTTTATTGTGCTGAGGGGGAAAAG
ATCGATTTTTCAGAGATAAGATCTTACTTTACTGCAGAAAATTGTCAAAC
GTTAATTGGTAAACCGAAACTGTTTTTAGTTCCTGCATACCAGGGGCTAA
GAAACCAAAAAGTTGTCTATATTGATGTATTTAAAGAAACGGAGAAGGAG
TGGTacgaaaacaacaaaataattttagcaaacaaacCAACATTAAATCC
TTCCATTCTCGAAGTAAGGAAtagaaaagttattttcataGATTCACCAC
CGAATACCAAAATTGCTAATTCAAAAGAAGAACAAGTTAACAACGAAAAT
AACATTTCCACATCATCATGTTTTCCACAGTCGATTTCAAACGAAGctga
tatcaatttttttgttggAGCCACCCCAGGTATGTACTGTAGATGACAGA
AAATGACGAACCGTCAACAGTAAAGAAGCCTAATGATAACATTGCCAAGC
CCCAATGTCCTAGACCTGCCTACTTAAGAGGTTCATTCTGTTCGAGAtat
cgagaaaattttttggggaAAAGCCGGTAAATCGGGACcacttttctcaa
aaattgacaaaaattcccTCTCCTGTATTAATAGTTTCCATGGGGAATAA
ACCATGGCAGTATCTCACTCGGACTGACACCATTTATAATTCATTGAACA
TTTTGTGTGAAAAAAGTGTAAACTTGTATCAAATGGTGCCATCCCCATGC
GGGGATTGATAAATTGCCTCCGAGTTAATATAAAAAGCTCAGTGACTGTA
GTAACGCTTACACATCTTCTTTATATCTTGTCTCTAAAAGAGTCATAAAT
CATTTTTTCGTTTTAGGGACCGTATCTTTACGAGTGGCAGATGAAGGCAC
TTGGTTTGTTCAAGAAGTAAAGAAAGTTTTCATCAAGTATGCAGAGAATA
AACCATGGTCATTCTTACgacaaaaaatcaataaaaatatttccgaGAAA
TGTTTCGATGGAGTGAAAATGATGTCCGATGGCGGGTTGGACACACTTAC
TAAAGAAATTAATTTCAACCCTGGCAAACCGTAATCTAATTAAtgtgaat
acaccttttcgaccgtagccgctaaTATGCTgcgcatttttttgtccgtt
ttacgagcctaaaaccgtcccagtctttcgCACcgaaagacaatagaaaa
atgttttaaaaaaaggattggatcaagTTTAGGGGGATGATTAAATAATC
ACGTACCTGACCGCGtgactacggtcaaaaaggtgtattcgcGTCCGACT
GTTTCcataatacactcttctcgagatgcataaatttattgttgtttaaa
gggacattaaagtagtaaaatgtaaacattgcgcgaaccacgtgtcatta
aagagaacaattaaaatcacgtgtccaaaacaaacttgtaaaacaa Coding sequence (CDS) from alignment at scaffold_354:396388..398233+ >TCONS_00061067 ID=TCONS_00061067|Name=TCONS_00061067|organism=Clytia hemisphaerica|type=CDS|length=1818bp|location=Sequence derived from alignment at scaffold_354:396388..398233+ (Clytia hemisphaerica)
ATGACCACAAGCCCTCGAGGCATTTGCCTTATATTCAATAATACATTTGA
AAAACCACGCGTTGTCAAAGATTCTGATGGCAGAATTCTTCCCAAAAGAG
ATGGCACTCATATAGATGTTGAAGCCctgaaaaatgtattttcttggTTG
AAATTCATTGCTGAGCCGTACCAAGACTTTGATAAAAAGAACATGTTGCA
GATCCTTGGGAAATATCGGGCTGATACGAGAATGCGAACTTACGATTGTT
TCGTGTGCTGTATTTTATCGCATGGCTTCGAAAAAGGAGTTTATTGTGCT
GAGGGGGAAAAGATCGATTTTTCAGAGATAAGATCTTACTTTACTGCAGA
AAATTGTCAAACGTTAATTGGTAAACCGAAACTGTTTTTAGTTCCTGCAT
ACCAGGGGCTAAGAAACCAAAAAGTTGTCTATATTGATGTATTTAAAGAA
ACGGAGAAGGAGTGGTacgaaaacaacaaaataattttagcaaacaaacC
AACATTAAATCCTTCCATTCTCGAAGTAAGGAAtagaaaagttattttca
taGATTCACCACCGAATACCAAAATTGCTAATTCAAAAGAAGAACAAGTT
AACAACGAAAATAACATTTCCACATCATCATGTTTTCCACAGTCGATTTC
AAACGAAGctgatatcaatttttttgttggAGCCACCCCAGGGACCGTAT
CTTTACGAGTGGCAGATGAAGGCACTTGGTTTGTTCAAGAAGTAAAGAAA
GTTTTCATCAAGTATGCAGAGAATAAACCATGGTCATTCTTACgacaaaa
aatcaataaaaatatttccgaGAAATGTTTCGATGGAGTGAAAATGATGT
CCGATGGCGGGTTGGACACACTTACTAAAGAAATTAATTTCAACCCTGGC
AAACCGTAAATGACCACAAGCCCTCGAGGCATTTGCCTTATATTCAATAA
TACATTTGAAAAACCACGCGTTGTCAAAGATTCTGATGGCAGAATTCTTC
CCAAAAGAGATGGCACTCATATAGATGTTGAAGCCctgaaaaatgtattt
tcttggTTGAAATTCATTGCTGAGCCGTACCAAGACTTTGATAAAAAGAA
CATGTTGCAGATCCTTGGGAAATATCGGGCTGATACGAGAATGCGAACTT
ACGATTGTTTCGTGTGCTGTATTTTATCGCATGGCTTCGAAAAAGGAGTT
TATTGTGCTGAGGGGGAAAAGATCGATTTTTCAGAGATAAGATCTTACTT
TACTGCAGAAAATTGTCAAACGTTAATTGGTAAACCGAAACTGTTTTTAG
TTCCTGCATACCAGGGGCTAAGAAACCAAAAAGTTGTCTATATTGATGTA
TTTAAAGAAACGGAGAAGGAGTGGTacgaaaacaacaaaataattttagc
aaacaaacCAACATTAAATCCTTCCATTCTCGAAGTAAGGAAtagaaaag
ttattttcataGATTCACCACCGAATACCAAAATTGCTAATTCAAAAGAA
GAACAAGTTAACAACGAAAATAACATTTCCACATCATCATGTTTTCCACA
GTCGATTTCAAACGAAGctgatatcaatttttttgttggAGCCACCCCAG
GGACCGTATCTTTACGAGTGGCAGATGAAGGCACTTGGTTTGTTCAAGAA
GTAAAGAAAGTTTTCATCAAGTATGCAGAGAATAAACCATGGTCATTCTT
ACgacaaaaaatcaataaaaatatttccgaGAAATGTTTCGATGGAGTGA
AAATGATGTCCGATGGCGGGTTGGACACACTTACTAAAGAAATTAATTTC
AACCCTGGCAAACCGTAA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00061067-exon-scaffold_354-1491911889:396388..397216 | TCONS_00061067-exon-scaffold_354-1491911889:396388..397216 | Clytia hemisphaerica | exon |
| TCONS_00061067-exon-scaffold_354-1510915933:396388..397216 | TCONS_00061067-exon-scaffold_354-1510915933:396388..397216 | Clytia hemisphaerica | exon |
| TCONS_00061067-exon-scaffold_354-1575043694:396388..397216 | TCONS_00061067-exon-scaffold_354-1575043694:396388..397216 | Clytia hemisphaerica | exon |
| TCONS_00061067-exon-scaffold_354-1491911889:397654..398233 | TCONS_00061067-exon-scaffold_354-1491911889:397654..398233 | Clytia hemisphaerica | exon |
| TCONS_00061067-exon-scaffold_354-1510915933:397654..398233 | TCONS_00061067-exon-scaffold_354-1510915933:397654..398233 | Clytia hemisphaerica | exon |
| TCONS_00061067-exon-scaffold_354-1575043694:397654..398233 | TCONS_00061067-exon-scaffold_354-1575043694:397654..398233 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_354 | supercontig | scaffold_354:396388..398233 + |
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: Molecular Function
| Term | Definition |
|---|
| GO:0008234 | cysteine-type peptidase activity |
| GO:0004197 | cysteine-type endopeptidase activity |
Vocabulary: Biological Process
| Term | Definition |
|---|
| GO:0006508 | proteolysis |
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
| Category |
Term Accession |
Term Name |
| biological_process |
GO:0006508 |
proteolysis |
| molecular_function |
GO:0004197 |
cysteine-type endopeptidase activity |
| molecular_function |
GO:0008234 |
cysteine-type peptidase activity |
Blast
BLAST of TCONS_00061067 vs. Swiss-Prot (Human)
Match: CASP8 (Caspase-8 OS=Homo sapiens GN=CASP8 PE=1 SV=1) HSP 1 Score: 105.145 bits (261), Expect = 2.512e-24 Identity = 79/258 (30.62%), Postives = 112/258 (43.41%), Query Frame = 1
Query: 112 SGSEDDFYKMTTSPRGICLIFNN-TFEKPRVVKDSDGRILPKRDGTHIDVEALKNVFSWLKFIAEPYQDFDKKNMLQILGKYRADTRMRTYDCFVCCILSHGFEKGVYCAEGEKIDFSEIRSYFTAENCQTLIGKPKLFLVPAYQGLRNQKVVYIDVFKETEKEWYENNKIILANKPTLNPSILEVRNRKVIFIDSPPNTKIANSKEEQVNNENNISTSSCFPQSISNEADINFFVGATPGTVSLRVADEGTWFVQEV 882
S + D Y+M + PRG CLI NN F K R K + R+GTH+D AL F L F +P+ D + + +IL Y+ DCF+CCILSHG + +Y +G++ E+ S FT C +L GKPK+F + A QG QK + + ET+ E +P L + S P T+ I +EAD + VS R EGTW++Q +
Sbjct: 219 SQTLDKVYQMKSKPRGYCLIINNHNFAKARE-KVPKLHSIRDRNGTHLDAGALTTTFEELHFEIKPHDDCTVEQIYEILKIYQL-MDHSNMDCFICCILSHGDKGIIYGTDGQEAPIYELTSQFTGLKCPSLAGKPKVFFIQACQGDNYQKGIPV----ETDSE----------EQPYLEMDL------------SSPQTRY-----------------------IPDEADFLLGMATVNNCVSYRNPAEGTWYIQSL 425
The following BLAST results are available for this feature:
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