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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00061069 ID=TCONS_00061069|Name=TCONS_00061069|organism=Clytia hemisphaerica|type=transcript|length=669bp
TAATTATTGGTTGTAATATTATGCTTGTCAACTGGAACGGGCAAGTGACC
AAAAGAACTTGCAGCAATCAAGATGTATTCTGGTCCCCTTTTGGGCGTGG
TTTTAttggttttagcctcgttttcgtTATGTGCGGAACATGGCGTGCAA
ATGAGGCTGACAAAGAAAGGCATGGATTACACTGTCAACGTTGGTATTGA
CATcttaaagaaagatttgaaaaaccTAAAGATCAATAAAAAAGGAACTT
ATGGCAAAGTTCACTTTAACATCAAAGAccTGAGTTTCAGCGAATTAGAC
TTTGGTCAACATGCTTTGAGTCCAGTGGAAGGAGTTGGTATGAAGGGCGT
TGTCTCTGGCATTGGATTGACTGCTTATGCGACTTTCAGTTACACATATA
TCTTCTTCTCCGATACAACACAGCTTCGTTTGATAGCAAGTGGTATTGAT
TTTGACATGACCTTgaaaatagGAGACGACAAAGGTGGCCACCCAACAAT
CAGTGTTCAAGAATGTCATGCAAACGTTGGAAGCATTGATGTAGCGTTCA
AAGGGGGGATGAGTTTCATTTACAATCTCCTCAAATCCAAGATCGAATCG
GAAATGGAAGAAACTCTGAAATCTTTGCTTTGTAAAATGGTGACAGAAGA
GATCAACACAAAAGCCAGN Run BLAST on NCBI protein sequence of TCONS_00061069-protein >TCONS_00061069-protein ID=TCONS_00061069-protein|Name=TCONS_00061069-protein|organism=Clytia hemisphaerica|type=polypeptide|length=199bp
MYSGPLLGVVLLVLASFSLCAEHGVQMRLTKKGMDYTVNVGIDILKKDLK
NLKINKKGTYGKVHFNIKDLSFSELDFGQHALSPVEGVGMKGVVSGIGLT
AYATFSYTYIFFSDTTQLRLIASGIDFDMTLKIGDDKGGHPTISVQECHA
NVGSIDVAFKGGMSFIYNLLKSKIESEMEETLKSLLCKMVTEEINTKAX Run BLAST on NCBI transcript from alignment at scaffold_354:434406..438751+ Legend: exonfive_prime_UTRCDS Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00061069 ID=TCONS_00061069|Name=TCONS_00061069|organism=Clytia hemisphaerica|type=transcript|length=4346bp|location=Sequence derived from alignment at scaffold_354:434406..438751+ (Clytia hemisphaerica)
TAATTATTGGTTGTAATATTATGCTTGTCAACTGGAACGGGCAAGTGACC
AAGTAAGTTACATTACAAATATTAGTTTCTGTTCCTTCGAAAAAAAACAC
TAACAAAGCACAGTACTCATTTAGAAGAAGCATTTGGCTGGGCTCGGCTT
TTATTCTTACTTTTGCCAAGAAAATCGACCCCTCTTTTTCTTGTAAAGTT
GTTCTTGAAAATAACGtgtatgtttattttttaaccTTTAGCAGCCATGA
AAGACTCCGAGAAATAGGtaaattttcacttttatttaTTCATATGAATT
GCCTTATCGATGAGGTGACGAGGTGATATANTAGACTCGATCTATTTTTT
CGAGTAATAGTGATCTGTTCCTTTTGAAAACAATGCTAAACTTTTGTTTA
TAGTCAAAATAATAAAACGTCAAGCTTTTTTGACGACTTTATCACGTAGA
TACTGTATAGCAATCTAGAAAAACAGATCATAATAATTTTTGGAACAGAT
CACACACGTTTTGGATATTCAATTTGTATTTCAGAAGAACTTGCAGCAAT
CAAGATGTATTCTGGTCCCCTTTTGGGCGTGGTTTTAttggttttagcct
cgttttcgtTATGTGCGGAACATGGCGTGCAAATGAGGCTGACAAAGAAA
GGCATGGATTACAGTAAGTCTTGTTGAACTTCTTTGCATATTTTTCGTGG
ACAATGATGGAGGCACATTGTGGTCGAAACAGATGATGTTTTCGATACTA
AgtataattttatttcaaaagatttgaaaataagaTCTTATTTTCCAAGA
ATGGCAGCGTAAAAATCACTTCCTTTATTTTAACTTTCTTGGCAGTTTCG
CACTATTTCTTTTGGTGTAGTTGAAAAGAAAGTATTCGGTGTTAAAGTCT
AGTATTATGTGATATTcaaagttgaaacttttctaGCTGTCATCTGAATT
CTTTAGCTGCTATTACTCTACTTAGCTGAAAATATAAACTGGAATCGTTT
ATAATTCGTGTAATACGGTTGTTATATGCTAATACaataattgttacggg
ataatatcagtttgtataGGTCTAGCAAGCTCGACTACTGAATATTCAAA
GGAGGTATTATGTTTACTATAAGGCAATGCTTAAAATGGTACGATATGTT
TACTACAACAGAATTGTTTCATTCATTATcaatatgtttttgttttcttt
gtggtcaagtatttttaaaatattgttttttatcGCACTTGATACTCTTA
GAGCTGTACCCATGGACTTTGtttacacaaaaaaaatcactttaatcgga
ttaactttcgcgagattaaatttcgtgatttCGCAAATTTTTTCCGTTTT
TACGAAATTAAGCGAAAACGCGTGAGACTCCTGactcgcgaaaataaatc
caccacaaaaattttaaaatcgcaTTTTTGGTGGAGAAACCAGTTCAAAG
TCTCCATTTGTGGCAAAACATGGCTATTTTTCAActgttttcaggcttat
tcgcgaaattaaatccacacgaaatttttcaaaactatgactcgcgaaat
taaatccagatcATTTCGCGATTGTTttcgctcgcgaaatttaatccgat
tgaTAAAGTAAGTAATATTCATATCCCCTTTTTCCCCTGAAATTTAAATC
TTTGAATAGTTTTGTAATTCCAATGATTTGATTGGTTCTTTATTGGGCAT
TCTCCACAGTCTTATTTTGAGATACAGATGAGGttttctaattcgatttt
caaggtaatctggattttcattgaaaatggaAACTTATAAACTAATCGAA
TTCGAGAGTGTCAACTTCGATTGCACCTACAAACATGTATCTTCCATTTA
CCCCCTTTGTTTCAACCCCGCCTCCGGCCATGATTTCCAAATAGCTTCTC
TTAATAAACTTACAGTACGTATCTTTTTTCAGCTGTCAACGTTGGTATTG
ACATcttaaagaaagatttgaaaaaccTAAAGATCAATAAAAAAGGAACT
TATGGCAAAGTTCACTTTAACATCAAAGAGTAAGAAacaattactcttag
gttccaaataaacggggggggNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNgggggggcccgtttatttggaacctaagagtaatt
gaTAAATAGATAGATTTATAATTAACATTTTTCTAATCCTCGAAAATGAC
TATTACAAGGTCTAAAAGGTAGCTAAAAGATGTTAGCTTCCCGGGATCTC
CTGAATCTATTATGAAATTTCTAATGAATtatcttttttttgcttttcaa
aaatctagccTGAGTTTCAGCGAATTAGACTTTGGTCAACATGCTTTGAG
TCCAGTGGAAGGAGTTGGTATGAAGGGCGTTGTCTCTGGCATTGGATTGA
CTGCTTATGCGACTTTCAGTTACACATATATCTTCTTCTCCGATACAACA
CAGCTTCGTTTGATAGCAAGTGGTATTGATTTTGACATGACCTTgaaaat
aggtaaaagaaaattttgattttttgagatCCTATAAATATATCGTGTGA
AAAATAACCTACTTTTTTCGTTGACATTTCCCATTTAggcaatttaaaat
atttaaaaatactcTTGTTTTATACTCGGCGTTTTCACCCATTCCtcaaa
ttttacgttacaatatatattattattatattacgTTACAAACTATCGTT
CcgaaaaaatgattttctgtGAAATCCACCACCAAAAGTCGAAAAAATNC
GCTCcgaaaaaatgattttctgtgaaattcaccaccaaaagtcgaaaaaa
aacgaaaccttGCCAACATCCAAGGTTATTATCAACAATTCTTCTTGATT
TTCAAACCTTTCCATCATAGGAGACGACAAAGGTGGCCACCCAACAATCA
GTGTTCAAGAATGTCATGCAAACGTTGGAAGCATTGATGTAGCGTTCAAA
GGGGGGATGAGTTTCATTTACAATCTCCTCAAATCCAAGATCGAATCGGA
AATGGAAGAAACTCTGAAATCTTTGGTAAGAAGGACTAAAAAAAATCCAG
AGTGGTCTTGTTTTTGAGAGTGTGAAAATTCAGGTTAGTCCtgagaaata
aaaaatccagggtggtcttgTTTTTGAGAGTTTAAAGATCCAGGGTGGTC
TTGTTTTTGAGAGTTTAAAAATCCAGAGTGGTcccgaaaaatcaaaaaaa
caatcCACAGGTGTCACTTTTAGACTATCAACATTCAATCAAGTGGTGAA
CTACCAAACTGAGGACTGGAGGTTAAGCATATAATATTATGTATTTCCGT
GAGTTCTTGCTTCAGTCCGTTTTATGCACGCGGGTGTGACCTAGATTTCC
GAAGCTGTCCCTGACCTAATTTCACAATATTATAATTAATTTTATCAATT
TCAGCTTTGTAAAATGGTGACAGAAGAGATCAACACAAAAGCCAGN Coding sequence (CDS) from alignment at scaffold_354:434406..438751+ >TCONS_00061069 ID=TCONS_00061069|Name=TCONS_00061069|organism=Clytia hemisphaerica|type=CDS|length=2985bp|location=Sequence derived from alignment at scaffold_354:434406..438751+ (Clytia hemisphaerica)
ATGTATTCTGGTCCCCTTTTGGGCGTGGTTTTAttggttttagcctcgtt
ttcgtTATGTGCGGAACATGGCGTGCAAATGAGGCTGACAAAGAAAGGCA
TGGATTACACTGTCAACGTTGGTATTGACATcttaaagaaagatttgaaa
aaccTAAAGATCAATAAAAAAGGAACTTATGGCAAAGTTCACTTTAACAT
CAAAGAccTGAGTTTCAGCGAATTAGACTTTGGTCAACATGCTTTGAGTC
CAGTGGAAGGAGTTGGTATGAAGGGCGTTGTCTCTGGCATTGGATTGACT
GCTTATGCGACTTTCAGTTACACATATATCTTCTTCTCCGATACAACACA
GCTTCGTTTGATAGCAAGTGGTATTGATTTTGACATGACCTTgaaaatag
GAGACGACAAAGGTGGCCACCCAACAATCAGTGTTCAAGAATGTCATGCA
AACGTTGGAAGCATTGATGTAGCGTTCAAAGGGGGGATGAGTTTCATTTA
CAATCTCCTCAAATCCAAGATCGAATCGGAAATGGAAGAAACTCTGAAAT
CTTTGCTTTGTAAAATGGTGACAGAAGAGATCAACACAAAAGCCAGNATG
TATTCTGGTCCCCTTTTGGGCGTGGTTTTAttggttttagcctcgttttc
gtTATGTGCGGAACATGGCGTGCAAATGAGGCTGACAAAGAAAGGCATGG
ATTACACTGTCAACGTTGGTATTGACATcttaaagaaagatttgaaaaac
cTAAAGATCAATAAAAAAGGAACTTATGGCAAAGTTCACTTTAACATCAA
AGAccTGAGTTTCAGCGAATTAGACTTTGGTCAACATGCTTTGAGTCCAG
TGGAAGGAGTTGGTATGAAGGGCGTTGTCTCTGGCATTGGATTGACTGCT
TATGCGACTTTCAGTTACACATATATCTTCTTCTCCGATACAACACAGCT
TCGTTTGATAGCAAGTGGTATTGATTTTGACATGACCTTgaaaatagGAG
ACGACAAAGGTGGCCACCCAACAATCAGTGTTCAAGAATGTCATGCAAAC
GTTGGAAGCATTGATGTAGCGTTCAAAGGGGGGATGAGTTTCATTTACAA
TCTCCTCAAATCCAAGATCGAATCGGAAATGGAAGAAACTCTGAAATCTT
TGCTTTGTAAAATGGTGACAGAAGAGATCAACACAAAAGCCAGNATGTAT
TCTGGTCCCCTTTTGGGCGTGGTTTTAttggttttagcctcgttttcgtT
ATGTGCGGAACATGGCGTGCAAATGAGGCTGACAAAGAAAGGCATGGATT
ACACTGTCAACGTTGGTATTGACATcttaaagaaagatttgaaaaaccTA
AAGATCAATAAAAAAGGAACTTATGGCAAAGTTCACTTTAACATCAAAGA
ccTGAGTTTCAGCGAATTAGACTTTGGTCAACATGCTTTGAGTCCAGTGG
AAGGAGTTGGTATGAAGGGCGTTGTCTCTGGCATTGGATTGACTGCTTAT
GCGACTTTCAGTTACACATATATCTTCTTCTCCGATACAACACAGCTTCG
TTTGATAGCAAGTGGTATTGATTTTGACATGACCTTgaaaatagGAGACG
ACAAAGGTGGCCACCCAACAATCAGTGTTCAAGAATGTCATGCAAACGTT
GGAAGCATTGATGTAGCGTTCAAAGGGGGGATGAGTTTCATTTACAATCT
CCTCAAATCCAAGATCGAATCGGAAATGGAAGAAACTCTGAAATCTTTGC
TTTGTAAAATGGTGACAGAAGAGATCAACACAAAAGCCAGNATGTATTCT
GGTCCCCTTTTGGGCGTGGTTTTAttggttttagcctcgttttcgtTATG
TGCGGAACATGGCGTGCAAATGAGGCTGACAAAGAAAGGCATGGATTACA
CTGTCAACGTTGGTATTGACATcttaaagaaagatttgaaaaaccTAAAG
ATCAATAAAAAAGGAACTTATGGCAAAGTTCACTTTAACATCAAAGAccT
GAGTTTCAGCGAATTAGACTTTGGTCAACATGCTTTGAGTCCAGTGGAAG
GAGTTGGTATGAAGGGCGTTGTCTCTGGCATTGGATTGACTGCTTATGCG
ACTTTCAGTTACACATATATCTTCTTCTCCGATACAACACAGCTTCGTTT
GATAGCAAGTGGTATTGATTTTGACATGACCTTgaaaatagGAGACGACA
AAGGTGGCCACCCAACAATCAGTGTTCAAGAATGTCATGCAAACGTTGGA
AGCATTGATGTAGCGTTCAAAGGGGGGATGAGTTTCATTTACAATCTCCT
CAAATCCAAGATCGAATCGGAAATGGAAGAAACTCTGAAATCTTTGCTTT
GTAAAATGGTGACAGAAGAGATCAACACAAAAGCCAGNATGTATTCTGGT
CCCCTTTTGGGCGTGGTTTTAttggttttagcctcgttttcgtTATGTGC
GGAACATGGCGTGCAAATGAGGCTGACAAAGAAAGGCATGGATTACACTG
TCAACGTTGGTATTGACATcttaaagaaagatttgaaaaaccTAAAGATC
AATAAAAAAGGAACTTATGGCAAAGTTCACTTTAACATCAAAGAccTGAG
TTTCAGCGAATTAGACTTTGGTCAACATGCTTTGAGTCCAGTGGAAGGAG
TTGGTATGAAGGGCGTTGTCTCTGGCATTGGATTGACTGCTTATGCGACT
TTCAGTTACACATATATCTTCTTCTCCGATACAACACAGCTTCGTTTGAT
AGCAAGTGGTATTGATTTTGACATGACCTTgaaaatagGAGACGACAAAG
GTGGCCACCCAACAATCAGTGTTCAAGAATGTCATGCAAACGTTGGAAGC
ATTGATGTAGCGTTCAAAGGGGGGATGAGTTTCATTTACAATCTCCTCAA
ATCCAAGATCGAATCGGAAATGGAAGAAACTCTGAAATCTTTGCTTTGTA
AAATGGTGACAGAAGAGATCAACACAAAAGCCAGN
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00061069-exon-scaffold_354-1491911889:434406..434457 | TCONS_00061069-exon-scaffold_354-1491911889:434406..434457 | Clytia hemisphaerica | exon |
| TCONS_00061069-exon-scaffold_354-1510915933:434406..434457 | TCONS_00061069-exon-scaffold_354-1510915933:434406..434457 | Clytia hemisphaerica | exon |
| TCONS_00061069-exon-scaffold_354-1575043694:434406..434457 | TCONS_00061069-exon-scaffold_354-1575043694:434406..434457 | Clytia hemisphaerica | exon |
| TCONS_00061069-exon-scaffold_354-1491911889:434940..435068 | TCONS_00061069-exon-scaffold_354-1491911889:434940..435068 | Clytia hemisphaerica | exon |
| TCONS_00061069-exon-scaffold_354-1510915933:434940..435068 | TCONS_00061069-exon-scaffold_354-1510915933:434940..435068 | Clytia hemisphaerica | exon |
| TCONS_00061069-exon-scaffold_354-1575043694:434940..435068 | TCONS_00061069-exon-scaffold_354-1575043694:434940..435068 | Clytia hemisphaerica | exon |
| TCONS_00061069-exon-scaffold_354-1491911889:436338..436434 | TCONS_00061069-exon-scaffold_354-1491911889:436338..436434 | Clytia hemisphaerica | exon |
| TCONS_00061069-exon-scaffold_354-1510915933:436338..436434 | TCONS_00061069-exon-scaffold_354-1510915933:436338..436434 | Clytia hemisphaerica | exon |
| TCONS_00061069-exon-scaffold_354-1575043694:436338..436434 | TCONS_00061069-exon-scaffold_354-1575043694:436338..436434 | Clytia hemisphaerica | exon |
| TCONS_00061069-exon-scaffold_354-1491911889:437614..437807 | TCONS_00061069-exon-scaffold_354-1491911889:437614..437807 | Clytia hemisphaerica | exon |
| TCONS_00061069-exon-scaffold_354-1510915933:437614..437807 | TCONS_00061069-exon-scaffold_354-1510915933:437614..437807 | Clytia hemisphaerica | exon |
| TCONS_00061069-exon-scaffold_354-1575043694:437614..437807 | TCONS_00061069-exon-scaffold_354-1575043694:437614..437807 | Clytia hemisphaerica | exon |
| TCONS_00061069-exon-scaffold_354-1491911889:438176..438330 | TCONS_00061069-exon-scaffold_354-1491911889:438176..438330 | Clytia hemisphaerica | exon |
| TCONS_00061069-exon-scaffold_354-1510915933:438176..438330 | TCONS_00061069-exon-scaffold_354-1510915933:438176..438330 | Clytia hemisphaerica | exon |
| TCONS_00061069-exon-scaffold_354-1575043694:438176..438330 | TCONS_00061069-exon-scaffold_354-1575043694:438176..438330 | Clytia hemisphaerica | exon |
| TCONS_00061069-exon-scaffold_354-1491911889:438710..438751 | TCONS_00061069-exon-scaffold_354-1491911889:438710..438751 | Clytia hemisphaerica | exon |
| TCONS_00061069-exon-scaffold_354-1510915933:438710..438751 | TCONS_00061069-exon-scaffold_354-1510915933:438710..438751 | Clytia hemisphaerica | exon |
| TCONS_00061069-exon-scaffold_354-1575043694:438710..438751 | TCONS_00061069-exon-scaffold_354-1575043694:438710..438751 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_354 | supercontig | scaffold_354:434406..438751 + |
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
| Term | Definition |
|---|
| IPR017942 | Lipid-bd_serum_glycop_N |
| IPR017943 | Bactericidal_perm-incr_a/b_dom |
Vocabulary: Molecular Function
| Term | Definition |
|---|
| GO:0008289 | lipid binding |
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
| Category |
Term Accession |
Term Name |
| molecular_function |
GO:0008289 |
lipid binding |
Blast
The following BLAST results are available for this feature:
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