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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00061115 ID=TCONS_00061115|Name=TCONS_00061115|organism=Clytia hemisphaerica|type=transcript|length=1212bp
gatctcaaagttatcaaaaatagaaaaaaattcttttccggccggccgca
ttaCAGTTTTTTTCCTTCATCCGCATTTTGGAAAAAActacatattttta
ttttcgtctAATTTTATAAGTTTTTGTTACTAATCTGTTTCATATAAAAA
ACTTTCCTTCCCTTTTGCTCTGCGTTGACGGTTGACGGCTTATGTTGACC
GCCCTGTGTTAACGCCCTGTGTATTATATCAAATAGCTTTATCTTCACCA
TATCCATATAATCTAAAGCTATATGTAAACGTTGTAAAGATACGAAAAAA
GACAATCTCTACTTTTGATTTGAGTCAATATCAAAAAAAGAAACGTCAAT
CATGTCTGGAACTAAGATTTTCAGCGTGGTATTTTTCGCAATGGCTCTTC
AATCGACTATCGGGAGACCGGCTTTCAATCCAGTATGTGACAGTATTTGC
AAGAAGCCTACTGGGGCAGATCTTACCAGTGTCAAACAAGTCTGCGATTC
TCTCGGTCGAGTTTACACAGCTGGTATTTGTGAATTTCTTCAAGCTTCAT
GCAATGTTCAGTACAcattaaaatttggaaaatgtgAAAGTGTTAAAACG
CCTAAACCGAAGCCAGCACAAAATCTGAAAACGACAGAGCCACCTGCTCC
TCCAAAACCAAAGATTGTATCAGATACTACCTCAAAACCCAAAACAGGAT
CAGTAGTGGATACTCCACCAAAACAAAACCAAGGGTCGGCAGGTGCCAGC
ACGCAGAAAAAAACGGGATCAAAACCTTGATTAATGCACAGTGACTGAGA
ATATGTAACATATCTTGTTTAGTATAAAGAAACTTTGTGATCATTTCCAA
ACTATTCCCAAAAGTTGGTGTTAATGACGATATAAATATATTGTTGAAGC
TTGTCAATCGTTGGTTTGCCAGAAGATATGCTTTAAATTATGAAAGAATA
GCAGTTTGGATTATTCCAAGCTAAAGNAGATATGCTTTAAATTATGAAAG
AACAGCAGTTTGGATTATTTTGTTGATTATTCCAAGCTAAATTAGTGTAA
AATATGGTGAGCATGAGAGGTCAAAACTACGACCAAGACTTTAAAAACTA
CAGATTATTAAAATTATGTTATATAACTtgttttaaaaagtaaaatatgt
AAAACAATGACAGCTAAAATACATCCCAGATTTATTCAAAATACTACTCC
CTTTGGTAAAAG Run BLAST on NCBI protein sequence of TCONS_00061115-protein >TCONS_00061115-protein ID=TCONS_00061115-protein|Name=TCONS_00061115-protein|organism=Clytia hemisphaerica|type=polypeptide|length=142bp
MSGTKIFSVVFFAMALQSTIGRPAFNPVCDSICKKPTGADLTSVKQVCDS
LGRVYTAGICEFLQASCNVQYTLKFGKCESVKTPKPKPAQNLKTTEPPAP
PKPKIVSDTTSKPKTGSVVDTPPKQNQGSAGASTQKKTGSKP Run BLAST on NCBI transcript from alignment at scaffold_354:1078286..1080692+ Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00061115 ID=TCONS_00061115|Name=TCONS_00061115|organism=Clytia hemisphaerica|type=transcript|length=2407bp|location=Sequence derived from alignment at scaffold_354:1078286..1080692+ (Clytia hemisphaerica)
gatctcaaagttatcaaaaatagaaaaaaattcttttccggccggccgca
ttaCAGTTTTTTTCCTTCATCCGCATTTTGGAAAAAActacatattttta
ttttcgtctAATTTTATAAGTTTTTGTTACTAATCTGTTTCATATAAAAA
ACTTTCCTTCCCTTTTGCTCTGCGTTGACGGTTGACGGCTTATGTTGACC
GCCCTGTGTTAACGCCCTGTGTATTATATCAAATAGCTTTATCTTCACCA
TATCCATATAATCTAAAGCTATATGTAAACGTTGTAAAGATACGAAAAAA
GACAATCTCTACTTTTGATTTGAGTCAATATCAAAAAAAGAAACGTCAAT
CATGTCTGGAACTAAGATTTTCAGCGTGGTATTTTTCGCAATGGCTCTTC
AATCGACTATCGGGAGACCGGCTTTCAATCCAGGTAAATAAATTACTTTT
ACagccctgtgtcacagacccgctgggactcCTGTCCCACtttaaaattt
ggccaaaatttcctctctgGTAGGAGAAATGTCCAAATGGAAAATattga
ctttcatttcatcccAATTTGAAGTTTAATGTGAAAAATtacacttcaaa
accatccacactggattttttggaacaatagaatttatatccccatcagg
attttgctaaaaatctTTATATCCCCACTCTAGGAAATAGTtctaccggg
gctgtgagactaGGGTgtaattttactttagttttgcCCTCCTTTAATAC
TATTTAAACCACCCAACTCTATTTCCCTTGAAAAGCCTTGAAAAACGAAA
GCAGTTTGCAGTCAACCTTTCCGACTTTACTATTGGCATTAACTTTATTG
CATTGGCTACTATTTCGCAATAATCTTGAACCCCTATTTTTTATTTCCCG
ATTTGATTTATCGGAATAAAGAAAAAGTATCCATGACAACTGATACAAGA
TCCACCAGGTATCTATGGCAATAGTAGAATTTCATTATCATCTCAAAATC
TTAAAGGGGCGAGAAATCTTTCCGGGTTGAAACAATGATAGGACTTGAGG
CTTCAGCAGAGTCTCTATCACTCGAACACACACGGGGAAACACACATTTT
TTTCGTGTTATGGGATAAGGTTTATTTAAGGTTTATAAAGCATAAGTGAT
CATAAAACTTTTTCAGgttaaggagatattcgagttaaaAAGGCTTCACT
GCATCTTTTTCCtccatcaaataaaaaatctcgTGGACTCATcttatttt
gaaagtttggagAGTTTTGGTCACACTAAGAAAGACAGTAAACAGCCTTT
GAATTGAAATGTTTTCTCATTTCAGTATGTGACAGTATTTGCAAGAAGCC
TACTGGGGCAGATCTTACCAGTGTCAAACAAGTCTGCGATTCTCTCGGTC
GAGTTTACACAGCTGGTATTTGTGAATTTCTTCAAGCTTCATGCAATGTT
CAGTACAcattaaaatttggaaaatgtgAAAGTGTGTAAGTATACTTTTA
CACAAACACCTATTTCAGTAGCTTTATGTCCTGCATTTTTGTCATTTGAA
GGTATCTATTTATTTCCTATCCTACATAACGCGGTCTGTTTTTGAAGGGA
CTGGTGATTACGAAAAAGACTTTTATGTAAGGCCTTGTGTCCCATGCAAG
AGACCGCGTGGTAAGGATTGATATTCGCAATCAAGTTTGAGCTACAGAGA
TGATACCAGAACTGCTGATTGAAATACTCTTGTCCTCTTAAttgatttta
aggaaaaaagttaaataaattCTTATCGTATATTTTAGTAAAACGCCTAA
ACCGAAGCCAGCACAAAATCTGAAAACGACAGAGCCACCTGCTCCTCCAA
AACCAAAGATTGTATCAGATACTACCTCAAAACCCAAAACAGGATCAGTA
GTGGATACTCCACCAAAACAAAACCAAGGGTCGGCAGGTGCCAGCACGCA
GAAAAAAACGGGATCAAAACCTTGATTAATGCACAGTGACTGAGAATATG
TAACATATCTTGTTTAGTATAAAGAAACTTTGTGATCATTTCCAAACTAT
TCCCAAAAGTTGGTGTTAATGACGATATAAATATATTGTTGAAGCTTGTC
AATCGTTGGTTTGCCAGAAGATATGCTTTAAATTATGAAAGAATAGCAGT
TTGGATTATTCCAAGCTAAAGNAGATATGCTTTAAATTATGAAAGAACAG
CAGTTTGGATTATTTTGTTGATTATTCCAAGCTAAATTAGTGTAAAATAT
GGTGAGCATGAGAGGTCAAAACTACGACCAAGACTTTAAAAACTACAGAT
TATTAAAATTATGTTATATAACTtgttttaaaaagtaaaatatgtAAAAC
AATGACAGCTAAAATACATCCCAGATTTATTCAAAATACTACTCCCTTTG
GTAAAAG Coding sequence (CDS) from alignment at scaffold_354:1078286..1080692+ >TCONS_00061115 ID=TCONS_00061115|Name=TCONS_00061115|organism=Clytia hemisphaerica|type=CDS|length=1287bp|location=Sequence derived from alignment at scaffold_354:1078286..1080692+ (Clytia hemisphaerica)
ATGTCTGGAACTAAGATTTTCAGCGTGGTATTTTTCGCAATGGCTCTTCA
ATCGACTATCGGGAGACCGGCTTTCAATCCAGTATGTGACAGTATTTGCA
AGAAGCCTACTGGGGCAGATCTTACCAGTGTCAAACAAGTCTGCGATTCT
CTCGGTCGAGTTTACACAGCTGGTATTTGTGAATTTCTTCAAGCTTCATG
CAATGTTCAGTACAcattaaaatttggaaaatgtgAAAGTGTTAAAACGC
CTAAACCGAAGCCAGCACAAAATCTGAAAACGACAGAGCCACCTGCTCCT
CCAAAACCAAAGATTGTATCAGATACTACCTCAAAACCCAAAACAGGATC
AGTAGTGGATACTCCACCAAAACAAAACCAAGGGTCGGCAGGTGCCAGCA
CGCAGAAAAAAACGGGATCAAAACCTTGAATGTCTGGAACTAAGATTTTC
AGCGTGGTATTTTTCGCAATGGCTCTTCAATCGACTATCGGGAGACCGGC
TTTCAATCCAGTATGTGACAGTATTTGCAAGAAGCCTACTGGGGCAGATC
TTACCAGTGTCAAACAAGTCTGCGATTCTCTCGGTCGAGTTTACACAGCT
GGTATTTGTGAATTTCTTCAAGCTTCATGCAATGTTCAGTACAcattaaa
atttggaaaatgtgAAAGTGTTAAAACGCCTAAACCGAAGCCAGCACAAA
ATCTGAAAACGACAGAGCCACCTGCTCCTCCAAAACCAAAGATTGTATCA
GATACTACCTCAAAACCCAAAACAGGATCAGTAGTGGATACTCCACCAAA
ACAAAACCAAGGGTCGGCAGGTGCCAGCACGCAGAAAAAAACGGGATCAA
AACCTTGAATGTCTGGAACTAAGATTTTCAGCGTGGTATTTTTCGCAATG
GCTCTTCAATCGACTATCGGGAGACCGGCTTTCAATCCAGTATGTGACAG
TATTTGCAAGAAGCCTACTGGGGCAGATCTTACCAGTGTCAAACAAGTCT
GCGATTCTCTCGGTCGAGTTTACACAGCTGGTATTTGTGAATTTCTTCAA
GCTTCATGCAATGTTCAGTACAcattaaaatttggaaaatgtgAAAGTGT
TAAAACGCCTAAACCGAAGCCAGCACAAAATCTGAAAACGACAGAGCCAC
CTGCTCCTCCAAAACCAAAGATTGTATCAGATACTACCTCAAAACCCAAA
ACAGGATCAGTAGTGGATACTCCACCAAAACAAAACCAAGGGTCGGCAGG
TGCCAGCACGCAGAAAAAAACGGGATCAAAACCTTGA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00061115-exon-scaffold_354-1491911889:1078286..1078718 | TCONS_00061115-exon-scaffold_354-1491911889:1078286..1078718 | Clytia hemisphaerica | exon |
| TCONS_00061115-exon-scaffold_354-1510915933:1078286..1078718 | TCONS_00061115-exon-scaffold_354-1510915933:1078286..1078718 | Clytia hemisphaerica | exon |
| TCONS_00061115-exon-scaffold_354-1575043694:1078286..1078718 | TCONS_00061115-exon-scaffold_354-1575043694:1078286..1078718 | Clytia hemisphaerica | exon |
| TCONS_00061115-exon-scaffold_354-1491911889:1079611..1079770 | TCONS_00061115-exon-scaffold_354-1491911889:1079611..1079770 | Clytia hemisphaerica | exon |
| TCONS_00061115-exon-scaffold_354-1510915933:1079611..1079770 | TCONS_00061115-exon-scaffold_354-1510915933:1079611..1079770 | Clytia hemisphaerica | exon |
| TCONS_00061115-exon-scaffold_354-1575043694:1079611..1079770 | TCONS_00061115-exon-scaffold_354-1575043694:1079611..1079770 | Clytia hemisphaerica | exon |
| TCONS_00061115-exon-scaffold_354-1491911889:1080074..1080692 | TCONS_00061115-exon-scaffold_354-1491911889:1080074..1080692 | Clytia hemisphaerica | exon |
| TCONS_00061115-exon-scaffold_354-1510915933:1080074..1080692 | TCONS_00061115-exon-scaffold_354-1510915933:1080074..1080692 | Clytia hemisphaerica | exon |
| TCONS_00061115-exon-scaffold_354-1575043694:1080074..1080692 | TCONS_00061115-exon-scaffold_354-1575043694:1080074..1080692 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_354 | supercontig | scaffold_354:1078286..1080692 + |
Blast
The following BLAST results are available for this feature:
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