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Overview
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00061128 ID=TCONS_00061128|Name=TCONS_00061128|organism=Clytia hemisphaerica|type=transcript|length=3431bpRun BLAST on NCBI protein sequence of TCONS_00061128-protein >TCONS_00061128-protein ID=TCONS_00061128-protein|Name=TCONS_00061128-protein|organism=Clytia hemisphaerica|type=polypeptide|length=671bp MKRRTIDASKLRRPTKRSRITDSVNGSWLLYLRFFVVWLLIITVDFALEFRun BLAST on NCBI transcript from alignment at scaffold_354:1166760..1181727+ Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.>TCONS_00061128 ID=TCONS_00061128|Name=TCONS_00061128|organism=Clytia hemisphaerica|type=transcript|length=14968bp|location=Sequence derived from alignment at scaffold_354:1166760..1181727+ (Clytia hemisphaerica) Coding sequence (CDS) from alignment at scaffold_354:1166760..1181727+ >TCONS_00061128 ID=TCONS_00061128|Name=TCONS_00061128|organism=Clytia hemisphaerica|type=CDS|length=18144bp|location=Sequence derived from alignment at scaffold_354:1166760..1181727+ (Clytia hemisphaerica) Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Position
The following features are aligned
Expression
Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Values :
GrOo_1 GrOo_2 FGOo_1 FGOo_2 EG_1 EG_2 P1_1 P1_2 P2_1 P2_2 P3_1 P3_2 PoPr_1 PoPr_2 St_1 St_2 GO_1 GO_2 PH_1 PH_2 BMF_1 BMF_2 MMF_1 MMF_2 M_1 M_2 GEC_1 GEC_2 GEN_1 GEN_2
Annotated Terms
The following terms have been associated with this transcript:
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Blast
BLAST of TCONS_00061128 vs. Swiss-Prot (Human)
Match: MACOI (Macoilin OS=Homo sapiens GN=TMEM57 PE=1 SV=1) HSP 1 Score: 294.278 bits (752), Expect = 9.186e-86 Identity = 126/210 (60.00%), Postives = 167/210 (79.52%), Query Frame = 2
Query: 140 MKRRTIDASKLRRPTKRSRITDSVNGSWLLYLRFFVVWLLIITVDFALEFRIEFLWPFWLLIKSSFDSFRYQGMAXXXXXXXXXXXSDVICFMFLPLHWLFFVASTYVWVQFVITTERGPCLATVALWLLFVYVEASVRLREIKSLPFNLDICRPFAAHCIGYPVVSLGYGFKSFVGYKVKNYKKTEVSHQNDFYQQLVSYALPIEVQSL 769
MKRR D SKLRRP KR+RIT+ + GS LYL+F VVW L++ DF LEFR E+LWPFWL I+S +DSFRYQG+A ++ F+C+ S++IC +F+P+ WLFF ASTYVWVQ+V TERG CL TV+LW+LFVY+EA++R +++K+ F++D+CRPFAAHCIGYPVV+LG+GFKS+V YK++ K+ EV +N+FY QL+ ALP E Q L
Sbjct: 1 MKRRNADCSKLRRPLKRNRITEGIYGSTFLYLKFLVVWALVLLADFVLEFRFEYLWPFWLFIRSVYDSFRYQGLAFSVFFVCVAFTSNIICLLFIPIQWLFFAASTYVWVQYVWHTERGVCLPTVSLWILFVYIEAAIRFKDLKN--FHVDLCRPFAAHCIGYPVVTLGFGFKSYVSYKMRLRKQKEVQKENEFYMQLLQQALPPEQQML 208 HSP 2 Score: 156.762 bits (395), Expect = 2.228e-39 Identity = 109/275 (39.64%), Postives = 173/275 (62.91%), Query Frame = 2
Query: 1190 SPKSHRSATIDNLQNKLKEEQVSRRRSEQQVCQMECDMKKLRSDLHSVRQTESEFRTQVNSSLIAERYMKAELDQLKSDNENLQQKISSFNSNKSQDKSLISSLERKLKNERDNRA-----QLXXXXXXXXXXXXXXXXXDLKLANHNACNA----RNNELEADLQRMQAKLDEANRKMEALK-KVESNRKHNENDTEKIKKEFEILTNALNAMQGKNLHLENSLSSETRLKLDLFSALGDTRRQLEIAQDRMKEKCKEVEMLKGKIAEVMAVMP 1984
SP +H+ D ++N + Q+S+ + + ++E D+KKL++DL + RQ E E R+Q++S ER +++E+ QL+ +NE LQ K+ + K +DK IS LE+KLK E++ R+ +E + ++ +++T+ A+ C R ELEA+ +++ + ++ L+ KV+ RK+ EN+ K+ E+L +AL+AMQ K HLENSLS+ETR+KLDLFSALGD +RQLEIAQ ++ +K +E++ LK KIAEVMAVMP
Sbjct: 360 SPSTHK----DLMENCIPNNQLSKPDA---LVRLEQDIKKLKADLQASRQVEQELRSQISSLSSTERGIRSEMGQLRQENELLQNKLHNAVQMKQKDKQNISQLEKKLKAEQEARSFVEKQLMEEKKRKKLEEATAARAVAFAAASRGECTETLRNRIRELEAEGKKLTMDMKVKEDQIRELELKVQELRKYKENE-----KDTEVLMSALSAMQDKTQHLENSLSAETRIKLDLFSALGDAKRQLEIAQGQILQKDQEIKDLKQKIAEVMAVMP 622 The following BLAST results are available for this feature:
BLAST of TCONS_00061128 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens)) Total hits: 1
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