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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00061130 ID=TCONS_00061130|Name=TCONS_00061130|organism=Clytia hemisphaerica|type=transcript|length=751bp
ttagattttacatTAATTTCCcgttttagaaaataaaacattaatATTAG
AACCGAAATGGATGATAAAAAAGTAGGATTTATTGGCGCCGGCAACATGG
CATATGCCATTGGAAAGGCTCTTGTATCGAGCGGTGTTATTAAAGCTGGA
AACATCATGGCTAGTGCTCGAACTAGAACAAGGCTTGATACATGTTGGAA
GGAATTGGGAACCAAATCAACACTTGACAATGAAGAAGTCGTCAAATTTG
CAGATATCATTTTTCTCAGTGTAAAACCTCACCTTATATGTGACGTCAtt
aaacaaatcaaacaaagctCAGGTCCAGCAAAATTATTTATCTCTGTTGC
AGCTGGAATTACGATAGCCACCATCAATGAGACTTTTGGGGTACCAACTC
GTATTGTCCGTACCATGCCCAATACTCCATGTATGGTTGAATGCGGTGTC
ATTGTGTACGCACTAAGCTCGGAATGTCTACCCAGTGATGGTGAAATGAT
CAAAACCATGTTGGATCCTATAGGATTGGTTGAAGAAGTGCCTGAAAAAC
AAATCGATGCTATTTCTTCGTTGATTGGATGTAGTATAGCATGGTATCAA
ATGGTCATCGAATCCATGGCGGACGGGGGTGTTAAAAATGGCGTACCAAG
GGCGTTGGCGTATAAAATGGCTGCTAAATCAATGGAAGGATCAGCCAAGT
TGGTATTGGAAACTGGAAACGCCCCTGCAGTTGTAAGTTTCTATATTATT
A Run BLAST on NCBI transcript from alignment at scaffold_354:1185478..1189913+ Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00061130 ID=TCONS_00061130|Name=TCONS_00061130|organism=Clytia hemisphaerica|type=transcript|length=4436bp|location=Sequence derived from alignment at scaffold_354:1185478..1189913+ (Clytia hemisphaerica)
ttagattttacatTAATTTCCcgttttagaaaataaaacattaatATTAG
AACCGAAATGGATGATAAAAAAGTAGGATTTATTGGCGCCGGCAACATGG
CATATGCCATTGGAAAGGCTCTTGTATCGAGCGGTGTTATTAAAGCTGGA
AACATCATGGCTAGTGCTCGAACTAGAACAAGGCTTGATACATGTTGGAA
GGTGCGAATGTAATTATTTGTTGAGTAAAatctagcccggggtccacttt
aaagcttttttatactgggtggcgcgattaagtggcccagtagtatatgg
taatatgccattagtatatggtaatatgcttttgcttaggcggactgtaa
aacagtccgtcagattttcgttgtttttgccaggtaaaaaaagaatgaag
cattgattgattgattgattgattgattgattgatttgctTTTTAGGAAT
TGGGAACCAAATCAACACTTGACAATGAAGAAGTCGTCAAATTTGCAGAT
ATCATTTTTCTCAGTGTAAAACCTCACCTTATATGTGACGTCAttaaaca
aatcaaacaaagctCAGGTCCAGCAAAATTATTTATCTCTGTTGCAGCTG
GAATTACGATAGCCACCATCAATGAGgtataatatctttttttgccaTTA
TAGATTTATTCTAGAACATTCACACGGATTTATCACTAGATTGGAGCCTC
TTTAACTCGATCCtgaatgtctctttaactcgaacaaattttttagTTCC
TCcagttaacaatgtcttataTACAAATTCAAGGCTTCAATTTACATAAG
TTATAAGACCTAGGATAAAGtcattctcaaaaattttatgcATGTAAAAG
CTCTACACCGTTACATAGATATTTTTAAGGAGAATAATGGGCCATTCCAA
TTTATTCATACAgaagggtggacgaacattttccaggggataaaagactg
gttttagttcgtccactGTCACTTTGaagtatgaaaagaattttttccaa
gggtttctttgcaaattttgccatctTCCAGGGGATATCCACACacttcc
aaaaatattttttggtgtgaaaaggttcgtcccccccccccccccaaaaa
attttttttggggtgaaaaagttttttttccccccccccccccctgtatg
gatttttaatggaacagcccgaTCTTCAAAAGTAAAGGTtattgaaaaac
tgaaaaaggtGTGCTTAGAAACTGTTTAAACAGTAAAATAATATCAAACT
ACTTCTAAGACAGACTattaatgtatttttttatcttctttaTCCCCAAG
ACTTTTGGGGTACCAACTCGTATTGTCCGTACCATGCCCAATACTCCATG
TATGGTTGAATGCGGTGTCATTGTGTACGCACTAAGCTCGGAATGTCTAC
CCAGTGATGGTGAAATGATCAAAACCATGTTGGATCCTATAGGTGGGtgt
tttttattattctttGCTTATGTTGCGAGTATACGAAGCGCAATTTATGA
TAGTTTACTCTTCAAATCGTTCCGACGATGCATTCGATTGAAAAGCAAGC
CAGGGGGCACTAAGGCAGGTGACGggcacagatttctgtaaagcctgATG
GACTAGATGTCGtactttaagctcttccaagtaAAAAAGCGAATATCGCA
ATAATATtactgctattgttttcgaaaacctgcgaagcttcttattggtc
aagcgctaaAATTCTactgtaatgtcacgtgacctaggtaggattacATA
AGCTCGGTacttttttcagccaaagcacgacatctaaaCGGGTATGTGTG
AGCAATAAGGGTACTGTTTTCCATACCTAATACCCCCggagagccattgt
ttaggtccCAAAAATTGAGCCTACATATGACCGACGCAGTAATTATAAAC
CTCGGAAGTAGACGAGCGAGACGGATCAGAGATATTTTGTTTTACATTTA
AAATGCGGTCAAGGAAATTGCTAGAGTCTCCCCAAAACTGATTATGGGTT
ACCCAAATAATGTGAACGCCAAACTTAATTTTCTCATTCTATTTTATTCA
CCTCTGCTCCAACCAGATGaacgaatttggaaattaaatgtttatttaAC
AATAGTTAAATCGTAGTTCAATTTTAAATCGTCTAAATCACTCATTCCGC
CTGCGGTACTACTGGGCGTCCTGCCTTGCGAGTAGCGTTACTTCTTATTT
GGTTCTGCGCGGTATTGGCTATACTCTGAAAGCACAGATAAGGTTAAGAA
CCACAACGACCAATGTAACGATCCTTTCAGGTTTAATTGAAGAAGTACCT
GAAAAACAAATCGATTCTGTCACAtctttaatgggatgcagtatAGCATG
GTATCAAATGGTCATCGAAGCTATGGCAGACGGGGGCGTTAAAAATGGCG
TACCGAGGGCGTTGGCGTATAAAATGGCAGCTAAATCAATGGAAGGATCA
GCTAAGTTGGTATTGGAAACTGGGAACGCGCCAGGAGTGGTAATTCTCTA
TAATCTATTTAAACTTTTATGTGCCAACTTTATCCTCAATGATATTTCTT
GGTGCTTCGACTTTCTACAATCATGTCGAAATAtgttgagattttagtgt
attttaacgtttttcagaatttaaagttcgggtgaGAATCGCTATTtcag
cacttccactttcttccattaaatatttcgattttggaggggttcggtAC
GGCCtttaggctatattccaagccttattagagcaaatttgagcttctAA
ATCTTTAGATCTTAAAGGTCCtaagttttaagttttgaatCTTAAAATTT
GATCGTGTCCCTACTATTGTATATTTGTTAGTGTCAAAGGTGGACTTTTA
GAATCGACGAGTAACATTTTCAATTCGGAATTGTTATACAGGAGCTCTTC
TCTTGAATTTCTTGTTATTGTGTTATAGTGCTCTTTTTCTTTATTCGTAT
CTTACAGTTGAAAGATCAAGTGACTTCGCCTGGCGGGTCGACTATTTGTG
GATTATACGAATTAGAGCAGAGTGGCATCAGAGGTGCTTTTATGAAAGCC
GTGGACGCTGCCACCAAAAGGAATCAAGATCTTGGAAAGAAATAGACTCT
TTCGTagtttgaaagtaaaatttttaaattaaacaatattttcttttgga
aatagttttgttgattttttaaagaaaaacgaaaactttCAAATTCAGGC
ATATAATTGTTATAATTTTTGAACTccaatacagttgacgctctctaatt
cggtTATCGAAGGGTAttcgattttcatcgaataaggaagTGTATCGAAA
GGTATCAATAATGGtttcaattttatcgaaaatggAGCGTAtagaatagt
agaatgtcgaattagagagcgacAACTGTTGCAACATTGCATCGTTCGCT
GACCATTATATGACTGTGAGGTTCCAATAGTTAGCTAATTTCAGAAATTA
AGTATAAATTAAAAGTACGCGGATTCTAATAAAATATGCTCGATTTTTTT
CTGAACGCTAATTATTTGGGTGTGCACCAAATAATATGGAAGTTTTCTCT
ATGCAATCATATTTGCTCTATCTATCATCCAGGTTTAGAGTTTTCCCGAG
ATTGAGTCTCGTATTCTTATCAgcaaaaatatccaaaaatttccaaaaaa
gcagcaattaaataaaaatgagaaagttGTTAGAGGCATGAGAGATGAGA
TAGGCTTTAACTTTGAATTGAGATGACAATGATCAACCTATTATAGTCGA
CTGAATCAGGGGTCTTTATTAAGTTGTAGGAACCACCGCTGGCTCGGTGG
GCAAATTTGGCAAATGAAAGACACTTTTTTACTGGACGGTGCTAAAGTGG
GGTGGTCAATTCTGTAAACCCACGACAGCTGATATATTTTTGGTATAATC
TCATGTAAAACATCCATTTCTGGGGTCGTATAATATTTTTCCGTCATGTC
ATTAGGATTACGGCCCGGGAATTTTCAGCACTANAACCCACGACAGCTGA
TATATTTTTGGTAGAATCTCATGTAAAACATCCATTTCTGGGGTCGTATA
ATACTTTTCCGTCATGTCATTAGGATTGCGGACCGGCAATTTTCAGCACT
GGTCCAGAACCACCCCTATGTACCCCCTTACTGAATAGTGTCCTCGACAG
ATGCTTATAGCTGAAGCTTTAATAAAACCTTTTATAACAAATCCTTCATT
CATTCTAGGATTGGTTGAAGAAGTGCCTGAAAAACAAATCGATGCTATTT
CTTCGTTGATTGGATGTAGTATAGCATGGTATCAAATGGTCATCGAATCC
ATGGCGGACGGGGGTGTTAAAAATGGCGTACCAAGGGCGTTGGCGTATAA
AATGGCTGCTAAATCAATGGAAGGATCAGCCAAGTTGGTATTGGAAACTG
GAAACGCCCCTGCAGTTGTAAGTTTCTATATTATTA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00061130-exon-scaffold_354-1491911889:1185478..1185678 | TCONS_00061130-exon-scaffold_354-1491911889:1185478..1185678 | Clytia hemisphaerica | exon |
| TCONS_00061130-exon-scaffold_354-1510915933:1185478..1185678 | TCONS_00061130-exon-scaffold_354-1510915933:1185478..1185678 | Clytia hemisphaerica | exon |
| TCONS_00061130-exon-scaffold_354-1575043694:1185478..1185678 | TCONS_00061130-exon-scaffold_354-1575043694:1185478..1185678 | Clytia hemisphaerica | exon |
| TCONS_00061130-exon-scaffold_354-1491911889:1185924..1186103 | TCONS_00061130-exon-scaffold_354-1491911889:1185924..1186103 | Clytia hemisphaerica | exon |
| TCONS_00061130-exon-scaffold_354-1510915933:1185924..1186103 | TCONS_00061130-exon-scaffold_354-1510915933:1185924..1186103 | Clytia hemisphaerica | exon |
| TCONS_00061130-exon-scaffold_354-1575043694:1185924..1186103 | TCONS_00061130-exon-scaffold_354-1575043694:1185924..1186103 | Clytia hemisphaerica | exon |
| TCONS_00061130-exon-scaffold_354-1491911889:1186778..1186919 | TCONS_00061130-exon-scaffold_354-1491911889:1186778..1186919 | Clytia hemisphaerica | exon |
| TCONS_00061130-exon-scaffold_354-1510915933:1186778..1186919 | TCONS_00061130-exon-scaffold_354-1510915933:1186778..1186919 | Clytia hemisphaerica | exon |
| TCONS_00061130-exon-scaffold_354-1575043694:1186778..1186919 | TCONS_00061130-exon-scaffold_354-1575043694:1186778..1186919 | Clytia hemisphaerica | exon |
| TCONS_00061130-exon-scaffold_354-1491911889:1189686..1189913 | TCONS_00061130-exon-scaffold_354-1491911889:1189686..1189913 | Clytia hemisphaerica | exon |
| TCONS_00061130-exon-scaffold_354-1510915933:1189686..1189913 | TCONS_00061130-exon-scaffold_354-1510915933:1189686..1189913 | Clytia hemisphaerica | exon |
| TCONS_00061130-exon-scaffold_354-1575043694:1189686..1189913 | TCONS_00061130-exon-scaffold_354-1575043694:1189686..1189913 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_354 | supercontig | scaffold_354:1185478..1189913 + |
Blast
BLAST of TCONS_00061130 vs. Swiss-Prot (Human)
Match: P5CR3 (Pyrroline-5-carboxylate reductase 3 OS=Homo sapiens GN=PYCR3 PE=1 SV=3) HSP 1 Score: 158.303 bits (399), Expect = 2.540e-46 Identity = 79/225 (35.11%), Postives = 141/225 (62.67%), Query Frame = 1
Query: 55 EMDDKKVGFIGAGNMAYAIGKALVSSGVIKAGNIMASARTRTRLDTCWKELGTKSTLDNEEVVKFADIIFLSVKPHLICDVIKQIKQSSGPAKLFISVAAGITIATINETFGVPTRIVRTMPNTPCMVECGVIVYALSSECLPSDGEMIKTMLDPIGLVEEVPEKQIDAISSLIGCSIAWYQMVIESMADGGVKNGVPRALAYKMAAKSMEGSAKLVLETGNAPA 729
E ++VGF+GAG MA AI + L+ +G ++A +I+ASA T L ++ LG ++T N+EV++ ++ + KPH++ V+ ++ + +SVAAG++++T+ E TR++R +PN PC+V+ G IV A S+ ++++ +L+ G EEVPE +D + L G +A+ E++A+G VK G+P +LA+++AA+++ G+AK++L G PA
Sbjct: 5 EPSPRRVGFVGAGRMAGAIAQGLIRAGKVEAQHILASAPTDRNLCH-FQALGCRTTHSNQEVLQSCLLVIFATKPHVLPAVLAEVAPVVTTEHILVSVAAGVSLSTLEELLPPNTRVLRVLPNLPCVVQEGAIVMARGRHVGSSETKLLQHLLEACGRCEEVPEAYVDIHTGLSGSGVAFVCAFSEALAEGAVKMGMPSSLAHRIAAQTLLGTAKMLLHEGQHPA 228
The following BLAST results are available for this feature:
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