TCONS_00061141 (transcript) - C. hemisphaerica

Overview
NameTCONS_00061141
Unique NameTCONS_00061141
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length930

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00061141 ID=TCONS_00061141|Name=TCONS_00061141|organism=Clytia hemisphaerica|type=transcript|length=930bp
caggaaaattataCAGACTTCATGCTAAATTTTTATGCACTCCCAGTCAG
TTCCGATTTATGAAAGACACTTAACAATCGAaccatgacgtcattttcac
cctCCCATCCTGTTTGTTACAAATGTCAAATTTCTTCTAAATCAAAGTCA
GTCAGAcgatttgaaaattgaagatgaatCACTTGAAAAACTAAATAATT
ATCAGATCTTCGACCTTTTCTTCTAAACAACACACTTCACAAACTCAAAC
AATGATGAAGTCGTAGAAGGTTGAGAGGATACCTATAAGGATTTACAATA
CGTTTCGTTACTGCACTTCAAGTATCTCATCGATAATTGTCCAAATTTAC
ATCAAATGATCATCACTGTGCAATTCGTTAACTTTCCTTACTGATTGATG
CTGATCAGATCTTCAACCTCTTCTTCTATTTAAACGACACACATCACAAA
CTCGAACAACGATCATAGAAATTGTAGAAGCAATCCCATCGACCTATAAG
GATTTCCTGTACGTTTCGTCACTACACTAGAAGTATCTCGTCTCTAAATG
TCAAAATTTACATCAAATGATCGACACTGCAATTCGTTGACTTTCCTTAC
TGACTGATACTGaatacCGTACCGTTCGCCGCAGCTCTAACTTTTCTGAA
CATACTGTTAACCGGTTGCCGTTTTTAATATTGGATTTTGTTTCTATTTA
CCGTTACGAAAAATGAATACTGAAACCAAAAAGACAATGTTAGAAGTTTA
AATCACGCAGTCAATACCACGATGTCGGTctgaatattttttattaattc
tATTTTGTTTGGAATTTCTAAGTGTTTAGATATTTTGAATCTGGAAAATA
ATGATATTACGTATCACGGACCCCGACCAGCCGGAGTGTAATTTGAATTT
TGAGAAACCTTTTTTTGCCCACCATGTTTG
Run BLAST on NCBI

transcript from alignment at scaffold_354:79258..85723-

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00061141 ID=TCONS_00061141|Name=TCONS_00061141|organism=Clytia hemisphaerica|type=transcript|length=6466bp|location=Sequence derived from alignment at scaffold_354:79258..85723- (Clytia hemisphaerica)
CAGGAAAATTATACAGACTTCATGCTAAATTTTTATGCACTCCCAGTCAG
TTCCGATTTATGAAAGGTAATAAATAAGCTCTTCATTTGATGCACTTTTC
ACAATCCCGGTTGAACTTTTTTCCACAGTGTGGATGAAAATTTATATCGA
AATCCCAATAGAGATAGAAATGTTTCCATGTCAAGAGTCTAGTGGGATAG
TTTTGTAGTACAATTCTTTCCCATCGAATTTCGACATGGGATTAAAATAA
GTCTATTTTGCAATGGGGCTGAAATTGTAGGTATCTTTCCCAGCGTGGAC
GAAATTTTAGCCTGATTTTCAAGTGGGTAGGTGGTCCCACCGGGTCTGTG
ACAGGGGTGTTCTAGTTGGGTTCGTTATTTAAATTTGAAAAGTCCACCAA
ATAAATTTTATTCAATGAAACTGTCCTTAACTACGGTTCGTTTCAAAAAT
GAAATAAAATAGTTTGGCTAATGAGATTTTTTAATGTCGAATTGGAAACG
GTAGCCGTCCAAATATTTTGACCGATGAATAAATTTTGTCAAAGATGTTT
TACTAAATTTAGATTTTGTATACCTTTTGTTTGAAGCTGAATGAGGGTTT
GGGAAACGGGAAACAGGACTAGAGATTGAGGAACTGGGTACTACAATGGC
TGATCGAGAGCTGTGGAGGGAGGGCTATTGTTTATTTTCGACCTAGGTCC
TTCGGACCTAGATCGAATGATGAGGCTTGGGCGCTAAATTTTGGATTTGA
TCATGTCTTAAAACTCAAACAAAAAAGAATTTAAAGAAATATAGTGATTG
CTTTATTCTTGGTGTTCAACCAATATTTAAGGGTTAATCAGAATCTTACA
ACTTTTCTAGACACTTAACAATCGAACCATGACGTCATTTTCACCCTCCC
ATCCTGTTTGTTACAAATGTCAAATTTCTTCTAAATCAAAGTCAGTCAGA
CGATTTGAAAATTGAAGATGAATCACTTGAAAAACTAAATAATTGTAAGT
TTTTATTCACATTCCATCAAAACCATAGGCCATTTCACAGTCCAAATTAA
TCATGGGCAATCAGGGCTGGTCGCGCCCCAACGGTTTCCTGTTGGTTAGA
AGACAAGAACTTTGCGCTTTTTGATTATTCTTTATGACGCTGAGTCCAGT
GAAGCGAGGTTTGGTGAGGTCGCTATTTTGAGGTTATATGTTAAAAATTC
AAATAACAAAACTTATAAAAAACGTGTAGCTTGTAATTCTATATTTTTCA
TTCCCATAGATCAGATCTTCGACCTTTTCTTCTAAACAACACACTTCACA
AACTCAAACAATGATGAAGTCGTAGAAGGTTGAGAGGATACCTATAAGGA
TTTACAATACGTTTCGTTACTGCACTTCAAGTATCTCATCGATAATTGTC
CAAATTTACATCAAATGATCATCACTGTGCAATTCGTTAACTTTCCTTAC
TGATTGATGCTGGTAAGTTTCCCGCTTTTCTTTAAGATTTTTTCGAAGTT
ATTCAATGGTTAGATAAAGCACTGTTGTAATCCTTATAGTTTTTAAAGGA
TTTATTCTATGAACATGTCTGTTTGTACATTGTTTTAACACCGGCTTGCT
TCCTTTTGTTTATCATTTTTACATACGGTCATAGTCTAGTCGATTGATAA
GGTAAAGAACTTTGAAAATTTTGAAGATTTTCTCTAATATTTTGCCTGGT
ACCACCAAGTATGCTCGTTTTTTTGACGACATATAAAATTTAACCAAGTT
TCAAAAAAAAAGTATATAGCTTTTAAAAGGACATAACCGTACTTGCGAAA
TTTGTAAACAAACTGTATGCAGCGGATACAAAATCAAAACAAATGTCACA
TGTCAAAATAAAATATCAAACTAAATATGGCTAATTTTGATTGTTCAATT
GTTTTACAAGTTTGTTTTGGACACGTGAATTTAATTGTTCTCTTTAATGA
CACGTGGTTCGCGCAATGTTTACATTTTACTACTTTAATGTACCTTTAAT
TCTTTGCTTTTCATTCCTTTAGATCAGATCTTCAACCTCTTCTTCTATTT
AAACGACACACATCACAAACTCGAACAACGATCATAGAAATTGTAGAAGC
AATCCCATCGACCTATAAGGATTTCCTGTACGTTTCGTCACTACACTAGA
AGTATCTCGTCTCTAAATGTCAAAATTTACATCAAATGATCGACACTGCA
ATTCGTTGACTTTCCTTACTGACTGATACTGGTAAGTTTCCCGCTTTTAA
GATCTTTTGTAGTTATTCAATGGTCAGATATATTGTTAGATAAAGTACTT
TAGGGTTTTGGATTGTTAAAATTTATTGGTCATTGGATTGTTGTCATATG
ATGTGGACTTTACACTTTATAAGAAATCTGTATAAGAACTGAACGAAATA
ATTCGATAATGTATAAATTTTAATAATCTAAACGATTTTAAAGATGTTTC
TTATGCTGCATTTCACTTTTATCATTTGGCTCAAATTAATTTTCAATCTT
CTTTTTTAGAATACCGTACCGTTCGCCGCAGCTCTAACTTTTCTGAACAT
ACTGTTAACCGGTAAGTTCAATCAAAAATAAACTTTTTCGATGATCCCAA
ATTTTGTTCTTGAATCGAAATCTTCCAATGTTTCGACTCCGTTACATACT
TTTCGCTTGACACAGCGGGCGTGTGGTTATTAATTTTCACCGCCCTTCCA
ATACGTGTATTTTACAGACCAGCCCAAATTTAGCATTTTGGCTTACAAAG
CTTCTCGCCGCAAACCGAGAGTCACCGTAAAAGATATATTGGTATGCGCC
TTACGACTAATGAACTTTTCAACAACAAATGTCAAAAAGTCGATAACCTG
ATTCAACCAAGAGTTACTTTGATAATCTGGTCTGTATAATACCAACTGAC
TAAAAATATCTATTTCACAATCTATCACTGGTTAAACTATCCTGGTCCAT
CTGAAACACGGGGCATACGGCTTTTCATTCCTTAAGATGGAAGGAATACT
AACATTGTATGACATGAAAAATTGAATTCAAATTCTTTTTTCTAGGTTGC
CGTTTTTGATCTTGGATTTTGTTTCTATTTACCGTTACGATGAACCGATA
CTGAAACCAAAAAGAAAAACAAAGTGTTGGAAGTTTAAATCACACAGTCA
ATACCACGATGTCGGTCTGAATATTTTTTATTAATTCAATTTTGTTTGGA
ATTTCTAAGTGTTTAGATATTTTGAATCTGGAAAATAATGATAAAACGTA
TCACGGACCCCGACCAGACGGAGTGTAATTTGAATTTTGAGAAACCTTTT
TTTTGCCCACCATGTTTGGGTCACAATATTATTCGTTGAATTTCTACATC
AGTCTAAACATTATAGTCACATTGAGCTTTTTACGGGATAGAATGAACTA
AGATCTAGATAAATTATGGAAATTTGAAAGCGAACACTCCGCTAACAGGG
GTCCTGAACCATTAACAGTTAAGGAAAAGCTGGTTTAAGATTTCAATGTT
TTAAGGTGTTTAAAAGTTAAAGTTTTAAAGTATTTGGACAAATATCTTCA
AATTTTTATATCGATGACACAAAGGTCGAACGAACTCAAATCTTAAAGTT
AAAAACGATTTATTTCCACATTATCTGCGAACTTTCTTAGATGAATGATT
TATTTCATTTCCAAACAATAGATCTGAGTTTTTGATTTTCCTAGAAAATG
ATGCATTGTGGGATTGTTTCGAGTGGATTACAATATAAATCTCTTAGGAA
TTCCTCGAGGGAATTCTTTTGTAATACACTCGAAACAATCCCACAATGCA
TCGGTCTTTTAGCTCAGCAATTTTGTATTTTGAACGCGATTTTGTAAGAG
AAAATCGCATATGATTATCATGATCGCCTTCTAGAGTCTTCTTTGGTAAA
GATGTCGTATCGGAAGTTAAGATTTTGAAATGTGGAACTTTTTGAAAAAC
TTGTTGCGTGTTTTTAAAGTCTCGTGTTGTTTGTGCTGTGGTTTGGACTT
TCCCATGGTTGTATCAAATTTGGCAAGATGGTGCTTTTTTAAGCAATATA
GTAGGTGATTCGCGACTCAAACTGAATAATTACAAATTTTTTTTTCATCA
AATCGTCTTGCAGCTTAAGTTTCACGTTCAATTCGGAATTGCCATCGTAA
TTATGGTGTTTATTCACGAAATTGGAAACGAGATTTTAGGTCACTGAAGT
GGTGTGATAGTTCTTATTCATATTTTCAGAAATTTTCCTTCTCCAAAGTA
TCTATTCTCTTTTTGAGGCTTTGACTTCTTCTTGTCAAACTATTGCCATA
GCTTTGAGTAATAAAAATAGAAATATTGAACATTTTTATTTCTTCTCTTG
CAATGATTCCAGTATTCACCATCCACTACCGCGAGAACTTGCCAGTTCCT
CTAGTGATCATCTCTGTGCAATCCATAACGCTTATCATTATAACAAGCTT
CTGCATGATTCTGAATCCTTTTAATAAATCTTTCTTTTAATCGTCACTAT
TTCTTAATTCATTATATCATAATAAGGTTAAAACCCCACACCATGTACAT
AACATACAAACTTCAGAAATTTCTTGAAAGGTCAAAAGTCAAAAATAAAA
ATCAAGATTTTATCAAATTCTAACCAAACCAGACAACATTAAACATACAA
CTCCACTAAATTTAAAAAGGATTTAAAATAACATGGAAAAATGTTTGGGT
TTTAATCGAGCTAGGTTTGACTTTTGAAGCATCAAAATTTGTCCCATAAA
AGATAAGTAGTAGAATTGTACAANTTGTTGTCATATGATGTGGACTTTAC
ACTTTATAAAAAATCTGTATAAGAACTGAACGAAATAATTCGATAATGAA
TCAAATTTTAATAATCTAAACGATTTTAAAGATGTTTCTTATGCTGCATT
TCACTTTTATCATTTGGCTCAAATTAACTTTCAATCTTCTTCATTTTTAG
AATACCGTACCGTTCGCCGCAGCTCTAACTTTTCTGAACATACTGTTAAC
CGGTAAGTTCAATCAAAAACAAACTTTTTCGATGATCTCTAAATTTTGTT
TTTGAATCGAAATCTTCCAATGTTTCGACTCCATTACATACTTTTCGCTT
GACACAGCGGGCGTAGGGTTAATAATTTTCACCGCCCTTCCAATACGTGT
ATTTTACAGACCAGCCCAAATTTAGCATTTTGGCTTACAAAACTTCTCGC
CGTGAACCGAGAGTCGCCGTAAAAGATATATATTGGTATGCGCCTTTCGA
CTAATGAACTTTTCAACAACAAATGTCAAAGTCGATAACCTGATTCAACC
AAGAGTTACTTTGATAATCTGGTCTGTAAAATACCAACTGACTAAAAATA
TCTATTTCTCAATCTATCACTGGTTAAACTATCCTGGTCCATCTGAAACA
CGGGGCATACGGCTTTTCATTCCTTAACCCTATTCATACTAGGCTTTTAG
GGGCGGTTCAGAACTAGGGGGGGGCTTTTCCTGTACCACCCCTTAACTTT
TGATCTAGTGGGTCTTTTTTGNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNAGAAAATT
TCACGGCAAAAGCTCTATTATTTCATGAACTATTACCAATAGTTTGACCT
CCGAACAGAAAGAGCCCCCCCCTAGTACGAATAGGGTTAAGATGGAAGGA
ATATTAACATTGTATGACATAAAAAATTGAATTCGAATTCGTTTTTCTAG
GTTGCCGTTTTTAATATTGGATTTTGTTTCTATTTACCGTTACGAAAAAT
GAATACTGAAACCAAAAAGACAATGTTAGAAGTTTAAATCACGCAGTCAA
TACCACGATGTCGGTCTGAATATTTTTTATTAATTCTATTTTGTTTGGAA
TTTCTAAGTGTTTAGATATTTTGAATCTGGAAAATAATGATATTACGTAT
CACGGACCCCGACCAGCCGGAGTGTAATTTGAATTTTGAGAAACCTTTTT
TTGCCCACCATGTTTG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_038361XLOC_038361Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00061141-exon-scaffold_354-1575043694:85658..85723TCONS_00061141-exon-scaffold_354-1575043694:85658..85723Clytia hemisphaericaexon
TCONS_00061141-exon-scaffold_354-1575043694:84730..84863TCONS_00061141-exon-scaffold_354-1575043694:84730..84863Clytia hemisphaericaexon
TCONS_00061141-exon-scaffold_354-1575043694:84262..84464TCONS_00061141-exon-scaffold_354-1575043694:84262..84464Clytia hemisphaericaexon
TCONS_00061141-exon-scaffold_354-1575043694:83493..83701TCONS_00061141-exon-scaffold_354-1575043694:83493..83701Clytia hemisphaericaexon
TCONS_00061141-exon-scaffold_354-1575043694:80722..80773TCONS_00061141-exon-scaffold_354-1575043694:80722..80773Clytia hemisphaericaexon
TCONS_00061141-exon-scaffold_354-1575043694:79258..79523TCONS_00061141-exon-scaffold_354-1575043694:79258..79523Clytia hemisphaericaexon
TCONS_00061141-exon-scaffold_354-1510915933:85658..85723TCONS_00061141-exon-scaffold_354-1510915933:85658..85723Clytia hemisphaericaexon
TCONS_00061141-exon-scaffold_354-1510915933:84730..84863TCONS_00061141-exon-scaffold_354-1510915933:84730..84863Clytia hemisphaericaexon
TCONS_00061141-exon-scaffold_354-1510915933:84262..84464TCONS_00061141-exon-scaffold_354-1510915933:84262..84464Clytia hemisphaericaexon
TCONS_00061141-exon-scaffold_354-1510915933:83493..83701TCONS_00061141-exon-scaffold_354-1510915933:83493..83701Clytia hemisphaericaexon
TCONS_00061141-exon-scaffold_354-1510915933:80722..80773TCONS_00061141-exon-scaffold_354-1510915933:80722..80773Clytia hemisphaericaexon
TCONS_00061141-exon-scaffold_354-1510915933:79258..79523TCONS_00061141-exon-scaffold_354-1510915933:79258..79523Clytia hemisphaericaexon
TCONS_00061141-exon-scaffold_354-1491911889:85658..85723TCONS_00061141-exon-scaffold_354-1491911889:85658..85723Clytia hemisphaericaexon
TCONS_00061141-exon-scaffold_354-1491911889:84730..84863TCONS_00061141-exon-scaffold_354-1491911889:84730..84863Clytia hemisphaericaexon
TCONS_00061141-exon-scaffold_354-1491911889:84262..84464TCONS_00061141-exon-scaffold_354-1491911889:84262..84464Clytia hemisphaericaexon
TCONS_00061141-exon-scaffold_354-1491911889:83493..83701TCONS_00061141-exon-scaffold_354-1491911889:83493..83701Clytia hemisphaericaexon
TCONS_00061141-exon-scaffold_354-1491911889:80722..80773TCONS_00061141-exon-scaffold_354-1491911889:80722..80773Clytia hemisphaericaexon
TCONS_00061141-exon-scaffold_354-1491911889:79258..79523TCONS_00061141-exon-scaffold_354-1491911889:79258..79523Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_354supercontigscaffold_354:79258..85723 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
3.48046	2.07658	2.70958	1.25872	0.0659588	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1.56415	1.30179	0	0	0	0	0.698887	1.44376
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00061141 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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