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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00061148 ID=TCONS_00061148|Name=TCONS_00061148|organism=Clytia hemisphaerica|type=transcript|length=356bp
gaagaattgaAGATGAAGATTTGGAAGGCTTTGTTACTCCTCACTTTCTT
AGTGTACACTGTTTACTGTGAAGAAACTGAAGAGATTGAAAACAGCTTGG
AAGATGTTGCTGACATTGAAGAAACACCTGCTTTAACATCGAATGACGAA
GAAACAAATGACGAAGATGAAGCGgctgaaacaaaacaaattttatcCAA
AGAGGCTGTAGAGGCTATAGAGGCTCCTATTTCAGGAGGTTGGGTACAAG
AAAGAGGATCGTGCAGATTGAGGAGAATAAGAAGGACTTGCCGTACTTTG
AGAAGGTTATGTAAAAGACTTGGTAAGTTATCCCAGCTGCCAAACAACGt
attttc Run BLAST on NCBI protein sequence of TCONS_00061148-protein >TCONS_00061148-protein ID=TCONS_00061148-protein|Name=TCONS_00061148-protein|organism=Clytia hemisphaerica|type=polypeptide|length=118bp
EELKMKIWKALLLLTFLVYTVYCEETEEIENSLEDVADIEETPALTSNDE
ETNDEDEAAETKQILSKEAVEAIEAPISGGWVQERGSCRLRRIRRTCRTL
RRLCKRLGKLSQLPNNVF Run BLAST on NCBI transcript from alignment at scaffold_354:123428..130263- Legend: exonCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00061148 ID=TCONS_00061148|Name=TCONS_00061148|organism=Clytia hemisphaerica|type=transcript|length=6836bp|location=Sequence derived from alignment at scaffold_354:123428..130263- (Clytia hemisphaerica)
GAAGAATTGAAGATGAAGATTTGGAAGGCTTTGTTACTCCTCACTTTCTT
AGTGTACACTGTTTACTGTGAGTTTTTTTTAAGGATTTTTTATAGTAGGG
GAAGGGGCCATATGATTTGCAGCATATTTTGTGGGATTCAACTGCATGTG
ATTGTTTCCGAAAAAGCTAGGAGTTTGATACTTTCTTGAGAGGGGGCCCG
CGAATTAGACCTGGCAAATGGTTTTTATGGCCGATTTTGTATACCAATCA
GAATGAGTTATAAATTGACGATTTCTAAAAGTCGAATTCAGCAAAATTGA
TTGTCATCATCACATGAAGCATGAAATTCTGAGCAAAAAAATATACTACA
GTGTCTCATTCTCAAACACACAAAAAATATAACCATTCAAAGTTCCAACA
CTCCACTCTCAAAATAGAAGACGTTCAGGACGTTACAAAGCAAAACGAAT
TGAAACAGTCATAGTCACACTCCACTTTTTTCATCGGAACGGAACTGCTC
TTTTTTCTTGCTTAGAAACGTTTCGAAATCAATACGAACAGTTTCTATCC
GTAACAAAAGCTAAACCGAAGCGATGCTATACCGTCACGTCTAAACATGG
CCTGATACTCAGAATCTCAGAGGTGTCTAAAATTCTCATTTAAAGCCGGT
CTCCACTTGCGCGCGCTTCAATCGCACTTTTCGAGAAAAGCTTCCACACT
ATTGGTCAAAAGAAAAATGAAGCAAGTCCATTGGCGCGATCTGACGTAAC
GGTTGAAAAAAGTTGAAATGTGTTCAACTTTTTTTTNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNCACTTTTGTGACAATCTTCAGGCAACTAAAAACATTTTTTCA
AACATTTTCACAAAAGTGGCATGAAACTGCCAGTAGCAGAATAAAAAAGT
GTCTTTTCGTTCTGACTGACATTCTCGCTCTACTTATGTATCGAGCACTG
TAAAAGACTGAAGAATTACTTACATGAAATATTTTACATAACTTTTTTAT
AGAGGCTGTAGAGGCTATAGAGGCTCCTATTTCAGGAGGTTGGGTACAAG
AAAGAGGATCGTGCAGATTGAGGAGAATAAGAAGGACTTGCCGTACTTTG
AGAAGGTTATGTAAAAGACTTGGTAAGTTATCCCAGCTGCCAAACAACGT
ATTTTCGACGTTTATCTAACGCTCACAACCACAACGTCCATATAACGTTA
GATGAACGTCGAAACAACGTTCTGTGCCAGCTGGGATACTATATCACACC
TCTGACTCACAGTTCTGTCTCATCACGGCCCCGATATAACTCTTTTCCCA
TGTAGTTCATGCTAGCTGTCTGATAACCGATAATTCATATTTTTCGCGTC
TAAAGTATATCTGTCTAACAACCAATACTTTAACAAAAACTTTCGTGATT
TTCACAAATGTTGGCCTTTTCCGCAAAAGTAAATTTCTTCGAAAATTCTT
AACAGAACAATTCGCGAAAGTTTATGCTCGTGAAAAATTCTTTAAAACCT
CGAAATCGTAATAAATATCAAATTTTGGCATAATTTTATCCTTTAATACA
TTTTTAAAGTCGAAGAGCAACCATATTTATCGGACTTAAGGAATATTTTT
CACTCATAAGGCAATTTTCAGTCGAAAATTNATCCTTTAATACATTTTTA
AAGTCGAACAGCAACCATATTTATCGGACTTAAGGAATATTTTTCACCCA
TTTTTATCCAACGATTCGCAAAAGTTTATGCTCTCGAAAAATATTTTTTC
CTCAAATTTCGCGATTTTTCGACCTCACGAAAGTTTCTGCTCGCAAAAGT
TTGTACACCTAAAGTATATTTTTTTGCAAAGTTCTAAAAAAATTTGTGAA
TATTAAACAGTTAAGGTTTTTTATGTTTCTTTATTTTAACATTGGAAGTT
ATAGACACAGTAGTCTAGCGAGCTAGACGACTAATTCAAACATAGTAGAA
ATAAAGCAAAAAATACTGGAGGGAACAATTTTAATCGTCTAGAAACCTTT
GTGCACTAACTCAAAACAAAAGAAAATTGTCAATTTGCAATTATAATCTT
GCTTAAAAAAGATTCTTAACGAAAAGAAATGTGCATTGATTTGTGTGTTA
AAATTTTTTCATTTGAGTTGATTTTGTTTTAAGAGTTTGTTGTTGCTTTG
ATAAATCGTTTTCTCGCTACGCAAGTTTCTGCGTAGCGAGCCGGAGATTC
TAAAGGCCGGAACACCGGATTCTTCAAGTAGTTTATACAAACTAAATCCC
GTAACAATAATCGTGATATCATATAACGCCTATACTACTGTATTACACGC
ATTATAAACGACCCCAGTCTATAAACACAGACCCTTTGATGATTTTTATC
TTTATTTCAAAGGGTTCGGAAGAAGATGTATTCTTCGACAAATCTTCAGA
AGATGTAAGTATGTTTTTCGAAACCGTTGCAATTTCTGTCGACGTGGTAG
ACACGGAAGAAGATGTCAACCTCAATATTCTGGTGGACTAATCCAAAATT
ATGAGGTTGAAAGTTCATATGAAGTCGTACCCATCTCCGCTTGATGATGA
GGACAATGGTTGAAATTTCTTTAGTCAAAACAAACATCTTGAACAAACCT
ACTTTTATTTTTTTTAACATTTTAGTAAATAATTTCAACTTACCTAGACA
AACAACATCAAACCAAATCCAACAACATCATTTTTCACCTGCGAAAGGGG
GTACTACCCTTGTCGACCGACGGGGGTGTGCCGCTGAATTTTTTAAGTAG
CCGTGAATGGGGCTGAAATTCCAAAATATTCTCAAAATGTCCTACTTTTT
TCCAAATTCCTCCAAAAACGTACCCTACGAGGGGTTGATTTTTTTATTTT
GGTGTTTTCGCGACCCTACCTGGGANACATTTTTATGACGTAATCTTTTT
TCCAAGCAAAAAGGATTGAAGCCAAAAAGTGCGATTGCAGCGCGCGCAAG
TGGAGACCGGCCTTTATAGAGTTATTCTGCAGTTAAGATTATAGCCTGTA
AACCTGTTCTCTTATCTTTGAAGGTGAAGAAACTGAAGAGATTGAAAACA
GCTTGGAAGATGTTGCTGACATTGAAGAAACACCTGCTTTAACATCGAAT
GACGAAGAAACAAATGACGAAGATGAAGCGGCTGAAACAAAACAAATTTT
ATCCAAAGGTACGAGATCACAAACTATAGAAAGAAGATAGGCCTCGACCC
ATTAATTGAAATATCGTGCAACTTATTCGAATATTTTCATAAAAGTTTGA
CTTCCAGTCCGATGTATTAGTTCTTTCATGCGGGGAGAGGGTCCATTATA
CCATAGTCTGTATAGAAAACTCTGGTCTGGAAGCCTATTGTTCTTTTCTA
TTGTTCTCCTTCCAATGTTCCGTTCAGTTCATAGATAGTGAAGCCGGCTG
GCAGTGGACCTCGTGAAAACAATTGAAAGAATGTCTAAAAGTCCTAGATT
ACTGGGCTATCCACGTAAAATATCGACTCTATCTAGCAAAACATCAGACG
GGAAAAAAAGTTTTGAACGAAAAATGGCTACTTGAAATATTTTTCAACTT
CCTGAACGAAGATTGCTCTGAAATTCTAGATTAAGACATTCTTGATGAAC
GGACTATGAGTATACAAACCCTACTGTACTGTCTATTCTAGTTTTCACAG
CCGATCATATAAAATTTGACTTCTTTTGTGCGGGGAGAGGGCTCACTATA
CAAACCCGACTATGCTGTTTTTTTTTAGTTTTCACAGCCGATCATATCTT
GAACGGATTAAGATCGCTTTCAATCTACTACCTTAAATATCAATATAATA
CAGTGGAGTCTCTTTAACTCGAACCTCTATAACTCGAATGTCTCGAACAA
GTTTTCTAGTCTCCTTATAAACGTTACTCCATATCTTGAAATTTCTTTAA
CTCGAGCAGATTTGTATTCCCGTTGCGTGTTTGAAACTCCAACGCTACAT
TTTAATTTCCTGAACCTCGATTACTACACCTCCATCTCACTTCTCACAGA
CCTGGTAGGATTTTCTCAGCCAGTGCCGATGAAAATAACGGTCTGAAACT
CGATGGTGATTGATATTTCCTCATTTTTTATGGCTGGGGATTTGAATTCC
ATTGTTTTCAAGGCAGAAAATTCAGTGGTGATGGGAAAAATTGCATACAT
TTATTTGATTATTTTTGGTGGGGGCAATAATTGAAGCATAATTTTTCTAC
CGGGGACGATATTTCGGTCAATTTTTTAAGTGGATAGGTGAGAAGGGGGT
GTATTACTTAACGAAATTAACCATACACACAGTGAAGATCCTCCAACCAG
AGTGTACTAGACGTTATTAAATTATGAAATATTATACAGTAAGAAAGAAA
AGACACTTTCTTTTATTCTGCTACCGGCAGTTTCATGCCACTTTTGTGAC
AATCTTCAGGCAACTAAAAACATTTTTTCAAACATTTTCACAAAAGTGGC
ATGAAACTGCCAGTAGCAGAATAAAAAAGTGTCTTTTCGTTCTGACTGAC
ATTCTCGCTCTACTTATGTATCGAGCACTGTAAAAGACTGAAGAATTACT
TACATGAAATATTTTACATAACTTTTTTATAGAGGCTGTAGAGGCTATAG
AGGCTCCTATTTCAGGAGGTTGGGTACAAGAAAGAGGATCGTGCAGATTG
AGGAGAATAAGAAGGACTTGCCGTACTTTGAGAAGGTTATGTAAAAGACT
TGGTAAGTTATCCCAGCTGCCAAACAACGTATTTTC Coding sequence (CDS) from alignment at scaffold_354:123428..130263- >TCONS_00061148 ID=TCONS_00061148|Name=TCONS_00061148|organism=Clytia hemisphaerica|type=CDS|length=1062bp|location=Sequence derived from alignment at scaffold_354:123428..130263- (Clytia hemisphaerica)
AGGCTGTAGAGGCTATAGAGGCTCCTATTTCAGGAGGTTGGGTACAAGAA
AGAGGATCGTGCAGATTGAGGAGAATAAGAAGGACTTGCCGTACTTTGAG
AAGGTTATGTAAAAGACTTGGTAAGTTATCCCAGCTGCCAAACAACGTAT
TTGTGAAGAAACTGAAGAGATTGAAAACAGCTTGGAAGATGTTGCTGACA
TTGAAGAAACACCTGCTTTAACATCGAATGACGAAGAAACAAATGACGAA
GATGAAGCGGCTGAAACAAAACAAATTTTATCCAAAGGAAGAATTGAAGA
TGAAGATTTGGAAGGCTTTGTTACTCCTCACTTTCTTAGTGTACACTGTT
TACTAGGCTGTAGAGGCTATAGAGGCTCCTATTTCAGGAGGTTGGGTACA
AGAAAGAGGATCGTGCAGATTGAGGAGAATAAGAAGGACTTGCCGTACTT
TGAGAAGGTTATGTAAAAGACTTGGTAAGTTATCCCAGCTGCCAAACAAC
GTATTTGTGAAGAAACTGAAGAGATTGAAAACAGCTTGGAAGATGTTGCT
GACATTGAAGAAACACCTGCTTTAACATCGAATGACGAAGAAACAAATGA
CGAAGATGAAGCGGCTGAAACAAAACAAATTTTATCCAAAGGAAGAATTG
AAGATGAAGATTTGGAAGGCTTTGTTACTCCTCACTTTCTTAGTGTACAC
TGTTTACTAGGCTGTAGAGGCTATAGAGGCTCCTATTTCAGGAGGTTGGG
TACAAGAAAGAGGATCGTGCAGATTGAGGAGAATAAGAAGGACTTGCCGT
ACTTTGAGAAGGTTATGTAAAAGACTTGGTAAGTTATCCCAGCTGCCAAA
CAACGTATTTGTGAAGAAACTGAAGAGATTGAAAACAGCTTGGAAGATGT
TGCTGACATTGAAGAAACACCTGCTTTAACATCGAATGACGAAGAAACAA
ATGACGAAGATGAAGCGGCTGAAACAAAACAAATTTTATCCAAAGGAAGA
ATTGAAGATGAAGATTTGGAAGGCTTTGTTACTCCTCACTTTCTTAGTGT
ACACTGTTTACT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00061148-exon-scaffold_354-1575043694:130197..130263 | TCONS_00061148-exon-scaffold_354-1575043694:130197..130263 | Clytia hemisphaerica | exon |
| TCONS_00061148-exon-scaffold_354-1575043694:125006..125140 | TCONS_00061148-exon-scaffold_354-1575043694:125006..125140 | Clytia hemisphaerica | exon |
| TCONS_00061148-exon-scaffold_354-1575043694:123428..123581 | TCONS_00061148-exon-scaffold_354-1575043694:123428..123581 | Clytia hemisphaerica | exon |
| TCONS_00061148-exon-scaffold_354-1510915933:130197..130263 | TCONS_00061148-exon-scaffold_354-1510915933:130197..130263 | Clytia hemisphaerica | exon |
| TCONS_00061148-exon-scaffold_354-1510915933:125006..125140 | TCONS_00061148-exon-scaffold_354-1510915933:125006..125140 | Clytia hemisphaerica | exon |
| TCONS_00061148-exon-scaffold_354-1510915933:123428..123581 | TCONS_00061148-exon-scaffold_354-1510915933:123428..123581 | Clytia hemisphaerica | exon |
| TCONS_00061148-exon-scaffold_354-1491911889:130197..130263 | TCONS_00061148-exon-scaffold_354-1491911889:130197..130263 | Clytia hemisphaerica | exon |
| TCONS_00061148-exon-scaffold_354-1491911889:125006..125140 | TCONS_00061148-exon-scaffold_354-1491911889:125006..125140 | Clytia hemisphaerica | exon |
| TCONS_00061148-exon-scaffold_354-1491911889:123428..123581 | TCONS_00061148-exon-scaffold_354-1491911889:123428..123581 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_354 | supercontig | scaffold_354:123428..130263 - |
Blast
The following BLAST results are available for this feature:
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