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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00061150 ID=TCONS_00061150|Name=TCONS_00061150|organism=Clytia hemisphaerica|type=transcript|length=237bp
gaagaattgaAGATGAAGATTTGGAAGGCTTTGTTACTCCTCACTTTCTT
AGTGTACACTGTTTACTGTGAAGAAACTGAAGAGATTGAAAACAGCTTGG
AAGATGTTGCTGACATTGAAGAAACACCTGCTTTAACATCGAATGACGAA
GAAACAAATGACGAAGATGAAGCGgctgaaacaaaacaaattttatcCAA
AGttcatagatagtgAAGCCGGCTGGCAGTGGACCTc Run BLAST on NCBI transcript from alignment at scaffold_354:124752..130263- Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00061150 ID=TCONS_00061150|Name=TCONS_00061150|organism=Clytia hemisphaerica|type=transcript|length=5512bp|location=Sequence derived from alignment at scaffold_354:124752..130263- (Clytia hemisphaerica)
GAAGAATTGAAGATGAAGATTTGGAAGGCTTTGTTACTCCTCACTTTCTT
AGTGTACACTGTTTACTGTGAGTTTTTTTTAAGGATTTTTTATAGTAGGG
GAAGGGGCCATATGATTTGCAGCATATTTTGTGGGATTCAACTGCATGTG
ATTGTTTCCGAAAAAGCTAGGAGTTTGATACTTTCTTGAGAGGGGGCCCG
CGAATTAGACCTGGCAAATGGTTTTTATGGCCGATTTTGTATACCAATCA
GAATGAGTTATAAATTGACGATTTCTAAAAGTCGAATTCAGCAAAATTGA
TTGTCATCATCACATGAAGCATGAAATTCTGAGCAAAAAAATATACTACA
GTGTCTCATTCTCAAACACACAAAAAATATAACCATTCAAAGTTCCAACA
CTCCACTCTCAAAATAGAAGACGTTCAGGACGTTACAAAGCAAAACGAAT
TGAAACAGTCATAGTCACACTCCACTTTTTTCATCGGAACGGAACTGCTC
TTTTTTCTTGCTTAGAAACGTTTCGAAATCAATACGAACAGTTTCTATCC
GTAACAAAAGCTAAACCGAAGCGATGCTATACCGTCACGTCTAAACATGG
CCTGATACTCAGAATCTCAGAGGTGTCTAAAATTCTCATTTAAAGCCGGT
CTCCACTTGCGCGCGCTTCAATCGCACTTTTCGAGAAAAGCTTCCACACT
ATTGGTCAAAAGAAAAATGAAGCAAGTCCATTGGCGCGATCTGACGTAAC
GGTTGAAAAAAGTTGAAATGTGTTCAACTTTTTTTTNNNNNNNNNNNNNN
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NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
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NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNCACTTTTGTGACAATCTTCAGGCAACTAAAAACATTTTTTCA
AACATTTTCACAAAAGTGGCATGAAACTGCCAGTAGCAGAATAAAAAAGT
GTCTTTTCGTTCTGACTGACATTCTCGCTCTACTTATGTATCGAGCACTG
TAAAAGACTGAAGAATTACTTACATGAAATATTTTACATAACTTTTTTAT
AGAGGCTGTAGAGGCTATAGAGGCTCCTATTTCAGGAGGTTGGGTACAAG
AAAGAGGATCGTGCAGATTGAGGAGAATAAGAAGGACTTGCCGTACTTTG
AGAAGGTTATGTAAAAGACTTGGTAAGTTATCCCAGCTGCCAAACAACGT
ATTTTCGACGTTTATCTAACGCTCACAACCACAACGTCCATATAACGTTA
GATGAACGTCGAAACAACGTTCTGTGCCAGCTGGGATACTATATCACACC
TCTGACTCACAGTTCTGTCTCATCACGGCCCCGATATAACTCTTTTCCCA
TGTAGTTCATGCTAGCTGTCTGATAACCGATAATTCATATTTTTCGCGTC
TAAAGTATATCTGTCTAACAACCAATACTTTAACAAAAACTTTCGTGATT
TTCACAAATGTTGGCCTTTTCCGCAAAAGTAAATTTCTTCGAAAATTCTT
AACAGAACAATTCGCGAAAGTTTATGCTCGTGAAAAATTCTTTAAAACCT
CGAAATCGTAATAAATATCAAATTTTGGCATAATTTTATCCTTTAATACA
TTTTTAAAGTCGAAGAGCAACCATATTTATCGGACTTAAGGAATATTTTT
CACTCATAAGGCAATTTTCAGTCGAAAATTNATCCTTTAATACATTTTTA
AAGTCGAACAGCAACCATATTTATCGGACTTAAGGAATATTTTTCACCCA
TTTTTATCCAACGATTCGCAAAAGTTTATGCTCTCGAAAAATATTTTTTC
CTCAAATTTCGCGATTTTTCGACCTCACGAAAGTTTCTGCTCGCAAAAGT
TTGTACACCTAAAGTATATTTTTTTGCAAAGTTCTAAAAAAATTTGTGAA
TATTAAACAGTTAAGGTTTTTTATGTTTCTTTATTTTAACATTGGAAGTT
ATAGACACAGTAGTCTAGCGAGCTAGACGACTAATTCAAACATAGTAGAA
ATAAAGCAAAAAATACTGGAGGGAACAATTTTAATCGTCTAGAAACCTTT
GTGCACTAACTCAAAACAAAAGAAAATTGTCAATTTGCAATTATAATCTT
GCTTAAAAAAGATTCTTAACGAAAAGAAATGTGCATTGATTTGTGTGTTA
AAATTTTTTCATTTGAGTTGATTTTGTTTTAAGAGTTTGTTGTTGCTTTG
ATAAATCGTTTTCTCGCTACGCAAGTTTCTGCGTAGCGAGCCGGAGATTC
TAAAGGCCGGAACACCGGATTCTTCAAGTAGTTTATACAAACTAAATCCC
GTAACAATAATCGTGATATCATATAACGCCTATACTACTGTATTACACGC
ATTATAAACGACCCCAGTCTATAAACACAGACCCTTTGATGATTTTTATC
TTTATTTCAAAGGGTTCGGAAGAAGATGTATTCTTCGACAAATCTTCAGA
AGATGTAAGTATGTTTTTCGAAACCGTTGCAATTTCTGTCGACGTGGTAG
ACACGGAAGAAGATGTCAACCTCAATATTCTGGTGGACTAATCCAAAATT
ATGAGGTTGAAAGTTCATATGAAGTCGTACCCATCTCCGCTTGATGATGA
GGACAATGGTTGAAATTTCTTTAGTCAAAACAAACATCTTGAACAAACCT
ACTTTTATTTTTTTTAACATTTTAGTAAATAATTTCAACTTACCTAGACA
AACAACATCAAACCAAATCCAACAACATCATTTTTCACCTGCGAAAGGGG
GTACTACCCTTGTCGACCGACGGGGGTGTGCCGCTGAATTTTTTAAGTAG
CCGTGAATGGGGCTGAAATTCCAAAATATTCTCAAAATGTCCTACTTTTT
TCCAAATTCCTCCAAAAACGTACCCTACGAGGGGTTGATTTTTTTATTTT
GGTGTTTTCGCGACCCTACCTGGGANACATTTTTATGACGTAATCTTTTT
TCCAAGCAAAAAGGATTGAAGCCAAAAAGTGCGATTGCAGCGCGCGCAAG
TGGAGACCGGCCTTTATAGAGTTATTCTGCAGTTAAGATTATAGCCTGTA
AACCTGTTCTCTTATCTTTGAAGGTGAAGAAACTGAAGAGATTGAAAACA
GCTTGGAAGATGTTGCTGACATTGAAGAAACACCTGCTTTAACATCGAAT
GACGAAGAAACAAATGACGAAGATGAAGCGGCTGAAACAAAACAAATTTT
ATCCAAAGGTACGAGATCACAAACTATAGAAAGAAGATAGGCCTCGACCC
ATTAATTGAAATATCGTGCAACTTATTCGAATATTTTCATAAAAGTTTGA
CTTCCAGTCCGATGTATTAGTTCTTTCATGCGGGGAGAGGGTCCATTATA
CCATAGTCTGTATAGAAAACTCTGGTCTGGAAGCCTATTGTTCTTTTCTA
TTGTTCTCCTTCCAATGTTCCGTTCAGTTCATAGATAGTGAAGCCGGCTG
GCAGTGGACCTC
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00061150-exon-scaffold_354-1575043694:130197..130263 | TCONS_00061150-exon-scaffold_354-1575043694:130197..130263 | Clytia hemisphaerica | exon |
| TCONS_00061150-exon-scaffold_354-1575043694:125006..125140 | TCONS_00061150-exon-scaffold_354-1575043694:125006..125140 | Clytia hemisphaerica | exon |
| TCONS_00061150-exon-scaffold_354-1575043694:124752..124786 | TCONS_00061150-exon-scaffold_354-1575043694:124752..124786 | Clytia hemisphaerica | exon |
| TCONS_00061150-exon-scaffold_354-1510915933:130197..130263 | TCONS_00061150-exon-scaffold_354-1510915933:130197..130263 | Clytia hemisphaerica | exon |
| TCONS_00061150-exon-scaffold_354-1510915933:125006..125140 | TCONS_00061150-exon-scaffold_354-1510915933:125006..125140 | Clytia hemisphaerica | exon |
| TCONS_00061150-exon-scaffold_354-1510915933:124752..124786 | TCONS_00061150-exon-scaffold_354-1510915933:124752..124786 | Clytia hemisphaerica | exon |
| TCONS_00061150-exon-scaffold_354-1491911889:130197..130263 | TCONS_00061150-exon-scaffold_354-1491911889:130197..130263 | Clytia hemisphaerica | exon |
| TCONS_00061150-exon-scaffold_354-1491911889:125006..125140 | TCONS_00061150-exon-scaffold_354-1491911889:125006..125140 | Clytia hemisphaerica | exon |
| TCONS_00061150-exon-scaffold_354-1491911889:124752..124786 | TCONS_00061150-exon-scaffold_354-1491911889:124752..124786 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_354 | supercontig | scaffold_354:124752..130263 - |
Blast
The following BLAST results are available for this feature:
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