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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00061193 ID=TCONS_00061193|Name=TCONS_00061193|organism=Clytia hemisphaerica|type=transcript|length=2374bp
NNACCACCACCACCCATAGTACCAAAAAACCTGACGGTGGAAATAAAGAT
TGTGTTGACAAGAACAAAAGCTGTGGTGGTTGGGCTAGATATGGATACTG
TAAAAGCAATGCATATGTTAAAACGAATTGTAAAAAGAGTTGCAAATCAT
GTGATAACTCGAGTTGTAAAGATAACAACAAGTGGTGCAACTCGTGGAAA
GGAAAAGGCTATTGTAATTCGAATAGTCAACACTACAACTACATgatcaa
aaattgtaaaaaagcaTGCTCCCTTTGTTAATCAAACAAATACAGGCCTG
AATTGTGTCAAACTTGTAATTTTAGGCAATTGTTTTAAAATCAGGCATTT
GGTACTTTATGGAAAACCCTATTACACGAATCTAGAATTATCAGGGAACT
AATCAATCATCTACTATCAACATTAACAAGTCAGACTCTCGAGAaggttt
tttttgtttatatggtgaaaaataaagcaaagaatgggtttttcaatttt
tagcatttgcaaacaaagattttggaATATACTACATGGTAATGACaatc
caaaaatcaagaaattaaaatcaaatacaaaatcatttatcaatatttat
aagaacaaactttacaGTAATacgcaaaaataaaatttgtttggTTACAT
TAAGAAATGCTGTTAAATTGTGTTAAAAAGTACTTTGCGTACACATTATG
TAGATTATGATCAGGGGGTAATGAAATTAAACTTTCATCAACTAAGTAAT
AAATATttgaatgttaatttttttacatttctgATGAGTTACTACTTAAA
TGTTGAGAGACACTACTTGCTCCTAAACTACCGTAAGTtcgtctaatgtc
gacatccgtcttctaatttcgacatccttctttatagataggaataataa
gaaggtcgaaatcactgatagactaaagatttttcctctcatcgcgctga
tcaaagtcaatcagcgatttcgaccttcctcagtttctattgttcctatc
tctaaagaagggtgtcgaaattagaagacggatgtcgacattagaccaac
ttacggtaggtCTTAGTGTTGGTCTATacatcaaatttgaaaatatttgt
gaGTAAACAGGTCTAAATCCATCACTCTTCATTGGGGTCATCTTCATTAA
AATATGTTTATGATACAATCCATCGCTTTTCatatagaaaattgaatacC
CATCAATATATCTTGAAGATTCCCTTTCATCAACAAGGCCGATCAAAGAA
AGAGGTTTGATGTAGCGTGGAATTCCTTGGACTTGCCATCTAACATGGAT
AGACCCATTAGTTGAATTTTTGTTCATTTGTAGGATGCTGAGCTCTGGAT
TATACAACACTATCTTTGTAAGGTTTTTTAAAATGTTGATTTGAAGAATG
TAAGAATTTAATGTTTCAGTCTTGGTTCCAATGAGTTGATTCTCAAAGAC
AACCTTATAACTGCATCGAATGTATGACCAACCCAATGTTGTGAATAACT
TTGGTGCTTGATCATGAAAATAAAGCATCATTTCTGTCATTTGACTTTCA
CTTGGTAGATCATTCCAATTATCTTTGCTTTTCTTTAAAGGCTTTTCTTC
TGTACTTCCAATACTTTGAGAATTCAAGAGAGGAGACTCATTGGAATTTG
ATGCATTATTACCAATATTGATACATTTAGTTGCAGGAAAGCGAGAATAA
TATTTCATTTGCATCAGTTCTCTTCCATTGACAGATATACAACTACCACT
CAATTCTTTTTTCTTGCAAACTTGATAAACATAAACATCTTCTAATGgat
ttattttcttgaatattgAAGAGCTTCTTAGTTCACTCATTGAAACAGCA
GTTGTTCTAATATTATTGTCAACACAAtcacaatttttatttttattcga
gGAGACTACAGTGACAGTTTTATGTTTCCTCAGTTCATTTGGAAGCAAAG
CCGTGATGTAAGAGGCCTCTTTTGTCTTCTTAAATTCATTATCAAATTGG
CTCACAAGCGAATTTGCAGAAGAAGAATGCCAAGTTGTTGGTGCAAAACC
AGCAGAAAACTTATTTGACAGCAAACAATAATACGATGGCTTGTATATCA
CATTTGACGTTCttgaaagtaacatttttgTGTGTAATTTATTACAATGC
TTATGTTAAATACGAGTTACCGTTATTGTAAACTTCTAGtctttgaattt
aaaatttctttactttttgaagTGAATTTGATCTGGAAATCCTCAATTTC
GTGACCGCCATCTTGATTTGTTCTAAATATTTCATCCAACCTGCCTGGga
gaggataattacaaggtctcaaaagaaggttgtctattgctcattccgac
atcgacttataacctgactgaaat Run BLAST on NCBI transcript from alignment at scaffold_354:780914..784040- Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00061193 ID=TCONS_00061193|Name=TCONS_00061193|organism=Clytia hemisphaerica|type=transcript|length=3127bp|location=Sequence derived from alignment at scaffold_354:780914..784040- (Clytia hemisphaerica)
NNACCACCACCACCCATAGTACCAAAAAACCTGACGGTGGAAATAAAGGT
ATAAAATGACTCGAATTTTACAAAGACATCCTAGTAGTAAACATACAAAT
TTCAATAGATCAAATTTAGCATCCCCCGAGCATCCCCCCAAAAAAGAAAA
TATAATAGACTTCAATGACATTACATTACGACAGAAATTTTGAAAGGGTA
AAGGCCCTTTGCTGTATTTATGTCCATTAAAAATTGACCTACATATATAG
ACTTACATAAACTTTGTCATTCGACAAACGACAAAATTAGAGCTCCAACA
ATATCCAAACATTATAGTGTTATTCAATATTTATTTCATCTAGATTGTGT
TGACAAGAACAAAAGCTGTGGTGGTTGGGCTAGATATGGATACTGTAAAA
GCAATGCATATGTTAAAACGAATTGTAAAAAGAGTTGCAAATCATGTGAT
AACTCGAGTTGTAAAGATAACAACAAGTGGTGCAACTCGTGGAAAGGAAA
AGGCTATTGTAATTCGAATAGTCAACACTACAACTACATGATCAAAAATT
GTAAAAAAGCATGCTCCCTTTGTTAATCAAACAAATACAGGCCTGAATTG
TGTCAAACTTGTAATTTTAGGTATCACAATCAATAAAATTTATATTTTTC
TAAGGATCCAGGTTCATTTTTATAAATAGGATTTTATATACCGATTACAT
TTTCTATAATTTATAAAATAAAAGTGTTTTCATGAATGTGCGTTTTTATA
ACTATTACTTTTTAATTTCTTTTATACATTTTCTTTTTTATGTTTGTACT
ATATACCATCTTATTATTGATTAAAAGGTCAAAGTAAAATGTTCTCTTGT
TCTTAGCCCTTTAAAATACCTTACTGTAGAGACATTTGTTTTATATTGTT
TTTCACTAATTCCTTTCATTTTCTTAGGGGTTTTGGCCAAATTTGGGATT
TTAAATTTTTTGTGAGCACTAAATTTTGCAAAAATTAATCCACACAAATT
TATAAAGTAAATAGCACAATTTTAACACATTTTCTTTAGTTTTCAGCCAA
TCAGACACATGTTTTCTTTATTTCACAGGCAATTGTTTTAAAATCAGGCA
TTTGGTACTTTATGGAAAACCCTATTACACGAATCTAGAATTATCAGGGA
ACTAATCAATCATCTACTATCAACATTAACAAGTCAGACTCTCGAGAAGG
TTTTTTTTGTTTATATGGTGAAAAATAAAGCAAAGAATGGGTTTTTCAAT
TTTTAGCATTTGCAAACAAAGATTTTGGAATATACTACATGGTAATGACA
ATCCAAAAATCAAGAAATTAAAATCAAATACAAAATCATTTATCAATATT
TATAAGAACAAACTTTACAGTAATACGCAAAAATAAAATTTGTTTGGTTA
CATTAAGAAATGCTGTTAAATTGTGTTAAAAAGTACTTTGCGTACACATT
ATGTAGATTATGATCAGGGGGTAATGAAATTAAACTTTCATCAACTAAGT
AATAAATATTTGAATGTTAATTTTTTTACATTTCTGATGAGTTACTACTT
AAATGTTGAGAGACACTACTTGCTCCTAAACTACCGTAAGTTCGTCTAAT
GTCGACATCCGTCTTCTAATTTCGACATCCTTCTTTATAGATAGGAATAA
TAAGAAGGTCGAAATCACTGATAGACTAAAGATTTTTCCTCTCATCGCGC
TGATCAAAGTCAATCAGCGATTTCGACCTTCCTCAGTTTCTATTGTTCCT
ATCTCTAAAGAAGGGTGTCGAAATTAGAAGACGGATGTCGACATTAGACC
AACTTACGGTAGGTCTTAGTGTTGGTCTATACATCAAATTTGAAAATATT
TGTGAGTAAACAGGTCTAAATCCATCACTCTTCATTGGGGTCATCTTCAT
TAAAATATGTTTATGATACAATCCATCGCTTTTCATATAGAAAATTGAAT
ACCCATCAATATATCTTGAAGATTCCCTTTCATCAACAAGGCCGATCAAA
GAAAGAGGTTTGATGTAGCGTGGAATTCCTTGGACTTGCCATCTAACATG
GATAGACCCATTAGTTGAATTTTTGTTCATTTGTAGGATGCTGAGCTCTG
GATTATACAACACTATCTTTGTAAGGTTTTTTAAAATGTTGATTTGAAGA
ATGTAAGAATTTAATGTTTCAGTCTTGGTTCCAATGAGTTGATTCTCAAA
GACAACCTTATAACTGCATCGAATGTATGACCAACCCAATGTTGTGAATA
ACTTTGGTGCTTGATCATGAAAATAAAGCATCATTTCTGTCATTTGACTT
TCACTTGGTAGATCATTCCAATTATCTTTGCTTTTCTTTAAAGGCTTTTC
TTCTGTACTTCCAATACTTTGAGAATTCAAGAGAGGAGACTCATTGGAAT
TTGATGCATTATTACCAATATTGATACATTTAGTTGCAGGAAAGCGAGAA
TAATATTTCATTTGCATCAGTTCTCTTCCATTGACAGATATACAACTACC
ACTCAATTCTTTTTTCTTGCAAACTTGATAAACATAAACATCTTCTAATG
GATTTATTTTCTTGAATATTGAAGAGCTTCTTAGTTCACTCATTGAAACA
GCAGTTGTTCTAATATTATTGTCAACACAATCACAATTTTTATTTTTATT
CGAGGAGACTACAGTGACAGTTTTATGTTTCCTCAGTTCATTTGGAAGCA
AAGCCGTGATGTAAGAGGCCTCTTTTGTCTTCTTAAATTCATTATCAAAT
TGGCTCACAAGCGAATTTGCAGAAGAAGAATGCCAAGTTGTTGGTGCAAA
ACCAGCAGAAAACTTATTTGACAGCAAACAATAATACGATGGCTTGTATA
TCACATTTGACGTTCTTGAAAGTAACATTTTTGTGTGTAATTTATTACAA
TGCTTATGTTAAATACGAGTTACCGTTATTGTAAACTTCTAGTCTTTGAA
TTTAAAATTTCTTTACTTTTTGAAGTGAATTTGATCTGGAAATCCTCAAT
TTCGTGACCGCCATCTTGATTTGTTCTAAATATTTCATCCAACCTGCCTG
GGAGAGGATAATTACAAGGTCTCAAAAGAAGGTTGTCTATTGCTCATTCC
GACATCGACTTATAACCTGACTGAAAT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00061193-exon-scaffold_354-1575043694:783993..784040 | TCONS_00061193-exon-scaffold_354-1575043694:783993..784040 | Clytia hemisphaerica | exon |
| TCONS_00061193-exon-scaffold_354-1575043694:783421..783697 | TCONS_00061193-exon-scaffold_354-1575043694:783421..783697 | Clytia hemisphaerica | exon |
| TCONS_00061193-exon-scaffold_354-1575043694:780914..782962 | TCONS_00061193-exon-scaffold_354-1575043694:780914..782962 | Clytia hemisphaerica | exon |
| TCONS_00061193-exon-scaffold_354-1510915933:783993..784040 | TCONS_00061193-exon-scaffold_354-1510915933:783993..784040 | Clytia hemisphaerica | exon |
| TCONS_00061193-exon-scaffold_354-1510915933:783421..783697 | TCONS_00061193-exon-scaffold_354-1510915933:783421..783697 | Clytia hemisphaerica | exon |
| TCONS_00061193-exon-scaffold_354-1510915933:780914..782962 | TCONS_00061193-exon-scaffold_354-1510915933:780914..782962 | Clytia hemisphaerica | exon |
| TCONS_00061193-exon-scaffold_354-1491911889:783993..784040 | TCONS_00061193-exon-scaffold_354-1491911889:783993..784040 | Clytia hemisphaerica | exon |
| TCONS_00061193-exon-scaffold_354-1491911889:783421..783697 | TCONS_00061193-exon-scaffold_354-1491911889:783421..783697 | Clytia hemisphaerica | exon |
| TCONS_00061193-exon-scaffold_354-1491911889:780914..782962 | TCONS_00061193-exon-scaffold_354-1491911889:780914..782962 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_354 | supercontig | scaffold_354:780914..784040 - |
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
| Term | Definition |
|---|
| IPR018790 | DUF2358 |
Blast
The following BLAST results are available for this feature:
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