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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00061220 ID=TCONS_00061220|Name=TCONS_00061220|organism=Clytia hemisphaerica|type=transcript|length=4280bp CATATTTCTGATCCTGGTCtgtcaaatagaccttttttcaaagaggacgt cctgttgaataattatgtagtccagccataaaaacaatgatagagccgtg cataattactgtatcatgcatattgtaataattatgcatggttttatcat tgtttttctgctggagtacataattattcaacagggtggcctctttgaaa aaaggtctatggtcTTGTTTATCTCGACACCGCGACCGCGTGGATCTGCA AAATAattaaaacaaacctttaaatAATGATATTCTTGGTATTATTCTCA TCGAACAAGTTCACTTAGCATTCCAATTCTTTCAACTAAAAAAGCAACCA AATGAGAGAAgcaattttacacaacacaTGAATTACACATgcaagttttt gttttcatcattaaaattttacaactttattaccgtcaactgctccaact tgggactatctggcgcaacatgggacggccattccaccatcatttcacca aacctccaaagtcatttgctaAGTTATCAGTTGAGGAGTCCATCAGTGAT TCTAACCTTCCTATcattcctatctttaaagaaggatgtcgaaattagaa gagggatgttgatattagaccaatttacggtaggcttttaaatcgaaata tgaaaaaaatcagtagtgcaacacacgcgagtgtctggaatgaagaagac caaattagggGCAAACAATGgtgcgtttgacgtcactcgcgcagcaagtt acacactcgctatttgttaatcccaatctccattcggcgtccggtcattt tgaatgaaaacaaaagttaaaaagggcgcgctatcagtgaaagttatcat gacatacattatgacagaaagtattattgataaacttggtggagttatca aaacaaatttgttgtcaaagagatataacagtaagtgaaaatacaggcca gatatcaacaagtcccatgttgcgaccacccaagttggagcagttgacgg tatatacACTTCAAGTcacatgataaaaataatttgcatgCTTTAGTCGG CCTGGTTTCCCAATCCTTATTTATCACAAatacgctctaggcgctaagag aCTACACACACAACGACTccctatttttcatttcaagcGCTGTGATGGCA GGGCCGCAGTATGGttacattaaattcaaaatgaaaccaggttctttcta ttgttttcagttCACAGTAAAAAGGTCTACTCTGGGTCtactaaaaatgt tgttttgatttggatatCTTTGTTGAAAGCATGCTATTTAGTTTTTAAGT GATGACtgcatcgttaaagttttcttttcaaacacaAAACTACGGTACAC CaatgtcaaaagaaaaattggaaccTATATGGAGTTCAGATCAGGCTTAT CTTTTGTATGATAATACATAATCTCAGGACAGTCCCGTTTTTCTAATGGA ATGacgaaatttgacaaaattaggactgaatttcaaaaatcaggTCCACT GTTAGAGATGGAAAATCTAGCTTCTttagttttgaaaagaaaatgtgGCA AATAAACAGATGGGATttcgaaatttgcaaaaataaggctaaatgCAAGA AATtgtttggcaaaaatttccaGTTGTAAAGAATTTTTCGATTTGGAACT TTTTGTTCTCTTTTTAATGTGACAGAAAATAGTTGGGATAATGTTTGCTT GCTTTTCTTAATGTGGatggcaaaatttgaaaaataaaaatatgccATGA AAATTTGTCTTCCAGATTTGAGTTACAACTAGTTCGAcagaaaggcaaaa tttttctttttgatactCTTTTATAGACCTTTCCCAGCTTTGCATTATTT AGGAGATTCTCACAGACATCGTGATGATAGGCATGATAGACGTAGAAGTT ACGATAAAGATAGAGATAGGAATCGTGGTCGTGATGAGAGAAGAAGAGAC AACAGACATGAACGTCGATATGAAGATGAGAAGAGAAGACATTTCACAGA ATCAGAATCAAGGTCAATAAAGAAATCTGATGAATCCAAGGAACCTAACA CAAGTTCTTCAAAgccattttcatttcaattaaaACCGAAGacggaagaa acaaaacaacaaacttCTACTTCTAAATCTTTCACTGTACAGCTGGATAC AAATAAGGTGAAAACGCAAAAGGATCTTCCTGTATTGCAAAAGCCGAAAG GAAACGTAGCATCTGTTTTCAATAATGACTCAGAGtctgaAGAAGAAGAG ATGCCACTGGAAGCTCGCATGAAAATGAGAAACGTTGGAAGgGATACCAT TACATCGAGTGGTCCGAACTCTTTTGGCAAAGGAAAAGAAGGATTTACGA AAAACTCATTTAAGAATTTCGAATTATCGATGAAACCAAGGAACAGTTTT GAAAAGCAGATAGACTACCAAAAAGACTAAAAGTACACCGGAAGTACTAT TCTTCGTCCTCAATTCAATATCAATGGTATGGCTAGATTACGAATTTTTA TGGGTTTTATTTCGATATGAAGTCAgtatgaaaaaattttccaaaacctA GGGACAATTATTGGCAAATTTCCTTACTGCCCCGCTCAGGTTGCGCGCTT TTTAATACcagtatttttaatttttatataaatgATATTTATTTCATCAC TATGTTAGATATATCAAGTATATTTTGTTCCTAATGAACCCAACTCAACA CTAGAAATATATTTAGATACGGGGAAAATGCCCCAataacaaaatttcaa tttctatcatgatattttcattttcatctgaatcatttttaaatttttta cgtTATCGTTTAATGTCAATGATTCTTATACAAATCAATCTTCCAGCAAA TAATATGTTAACAGTTGAGGATATATATTCATTCAACAgtttaaacaatt ttaaaaggtTTCTGGATGATCTGCAATGAAGCAGTTGCTACAACGAGAAC TTAAAGGAGATAATAGATGAGTGTTATCTTAGTCTGTTAGTTTAATATTT CGATGTAGTGATCTTTATTCCTCACTTCGAGTGGATGGTTCTTTTTCATT CATGCTATATATAACTGATAGATGGTTCTGCTGCGATCTGGCACACAGAT GATATCCAACTCTAAACCATCCAGAAAAATTTTGAGGTTTACTTTAATTA ATGTTTATCGTTGTCTTTTTTCTTGTCATCTTCATCTTTAGATCGCTCTT TCCAATTCGTTTTATTGATAGTGCCAGGgattttgacttcaaaaacaGGG AAAACGCTTGTGATTGTGTTCAATAAGATCTTTGTGACTGTATCTTCAGC CGAGTCTTCAAATTCATCTAATTGTAACGTCgccatcttattggttaaga GGAAATAACCGAACACAATTTCTGGTAAATTTTGTACTTTGCCTCGTAAG AGGATAGGTTTATCTGGACTATTTTGTAAAGAATCCGCATGTTTCATCAA GTCAGTTGATGCAAAGAATTCAACATTCCAAAGTCCTCTCTCtttaatat ctttttcattaaattcaatCTCATCATAGAAAGCTGAATTTTCGATGAAA TTTCGATTATTGGTTGGAACTTTACCGTTTATACAAAACCACCAGAATGT GAATGCAGTATCTCCAAGGAAATTCCAATCTTTACCAAGAGAGCTGGCAT TCTCAATAGTACCATCATTCCATAATGCAAAATTTGATCGAATGCTACCT CGCTTCTTCATACCATAATGCCGTAATGAGAATTTCTGTTTCAATAAAGG TGCCAACAATCGTCTGATTTTGTCCAGTTGAGCTTCCTCGAAGCCTCGGT ATTTGACCCAACTTTGCGCCGGATAACCAAGATCTCCTGGTTGACTGAAA TCTAATCTCATACTAGTAATTTCTTCCATAAATGCGAATGGGAAATCATG GTTGTTCTCGTCAAAATCTTCACCGCAACCTCTGATGAAGATTTTCCTGA TTTCTGCTGGTTTTGGGATTTCACCTTTTAAACGTACTTTCAATAATTCT GGACGTAATTTGGTGCAGACTCCGTCACCTGTTTGATGAGAAAAAGTTTA TCAGAAAATATTATGGGTTTTCAATACGAATTTTGATTGAGATTTGGGAT GATCAGACTATAATTTGAATTGATGAATTGATTCAACTCTGGTTTGAAAT GACTCAACTTTCTTTCTGATCGTAGCTGTGAAGGGCCTATGTGACCTGCT TGTGGCTTCGAAAACAAGTGCCATCTCTAATCAATTTCCATCTTTCTTCA GTTTAATTATGACCGTTTTAGCAAAAAGTG Run BLAST on NCBI transcript from alignment at scaffold_354:1137071..1142468- Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00061220 ID=TCONS_00061220|Name=TCONS_00061220|organism=Clytia hemisphaerica|type=transcript|length=5398bp|location=Sequence derived from alignment at scaffold_354:1137071..1142468- (Clytia hemisphaerica) CATATTTCTGATCCTGGTCTGTCAAATAGACCTTTTTTCAAAGAGGACGT
CCTGTTGAATAATTATGTAGTCCAGCCATAAAAACAATGATAGAGCCGTG
CATAATTACTGTATCATGCATATTGTAATAATTATGCATGGTTTTATCAT
TGTTTTTCTGCTGGAGTACATAATTATTCAACAGGGTGGCCTCTTTGAAA
AAAGGTCTATGGTCTTGTTTATCTCGACACCGCGACCGCGTGGATCTGCA
AAATAATTAAAACAAACCTTTAAATAATGATATTCTTGGTATTATTCTCA
TCGAACAAGTTCACTTAGCATTCCAATTCTTTCAACTAAAAAAGCAACCA
AATGAGAGAAGCAATTTTACACAACACATGAATTACACATGCAAGTTTTT
GTTTTCATCATTAAAATTTTACAACTTTATTACCGTCAACTGCTCCAACT
TGGGACTATCTGGCGCAACATGGGACGGCCATTCCACCATCATTTCACCA
AACCTCCAAAGTCATTTGCTAAGTTATCAGTTGAGGAGTCCATCAGTGAT
TCTAACCTTCCTATCATTCCTATCTTTAAAGAAGGATGTCGAAATTAGAA
GAGGGATGTTGATATTAGACCAATTTACGGTAGGCTTTTAAATCGAAATA
TGAAAAAAATCAGTAGTGCAACACACGCGAGTGTCTGGAATGAAGAAGAC
CAAATTAGGGGCAAACAATGGTGCGTTTGACGTCACTCGCGCAGCAAGTT
ACACACTCGCTATTTGTTAATCCCAATCTCCATTCGGCGTCCGGTCATTT
TGAATGAAAACAAAAGTTAAAAAGGGCGCGCTATCAGTGAAAGTTATCAT
GACATACATTATGACAGAAAGTATTATTGATAAACTTGGTGGAGTTATCA
AAACAAATTTGTTGTCAAAGAGATATAACAGTAAGTGAAAATACAGGCCA
GATATCAACAAGTCCCATGTTGCGACCACCCAAGTTGGAGCAGTTGACGG
TATATACACTTCAAGTCACATGATAAAAATAATTTGCATGCTTTAGTCGG
CCTGGTTTCCCAATCCTTATTTATCACAAATACGCTCTAGGCGCTAAGAG
ACTACACACACAACGACTCCCTATTTTTCATTTCAAGCGCTGTGATGGCA
GGGCCGCAGTATGGTTACATTAAATTCAAAATGAAACCAGGTTCTTTCTA
TTGTTTTCAGTTCACAGTAAAAAGGTCTACTCTGGGTCTACTAAAAATGT
TGTTTTGATTTGGATATCTTTGTTGAAAGCATGCTATTTAGTTTTTAAGT
GATGACTGCATCGTTAAAGTTTTCTTTTCAAACACAAAACTACGGTACAC
CAATGTCAAAAGAAAAATTGGAACCTATATGGAGTTCAGATCAGGCTTAT
CTTTTGTATGATAATACATAATCTCAGGACAGTCCCGTTTTTCTAATGGA
ATGACGAAATTTGACAAAATTAGGACTGAATTTCAAAAATCAGGTCCACT
GTTAGAGATGGAAAATCTAGCTTCTTTAGTTTTGAAAAGAAAATGTGGCA
AATAAACAGATGGGATTTCGAAATTTGCAAAAATAAGGCTAAATGCAAGA
AATTGTTTGGCAAAAATTTCCAGTTGTAAAGAATTTTTCGATTTGGAACT
TTTTGTTCTCTTTTTAATGTGACAGAAAATAGTTGGGATAATGTTTGCTT
GCTTTTCTTAATGTGGATGGCAAAATTTGAAAAATAAAAATATGCCATGA
AAATTTGTCTTCCAGATTTGAGTTACAACTAGTTCGACAGAAAGGCAAAA
TTTTTCTTTTTGATACTCTTTTATAGACCTTTCCCAGCTTTGCATTATTT
AGGAGATTCTCACAGACATCGTGATGATAGGCATGATAGACGTAGAAGTT
ACGATAAAGATAGAGATAGGAATCGTGGTCGTGATGAGAGAAGAAGAGAC
AACAGACATGAACGTCGATATGAAGATGAGAAGAGAAGACATTTCACAGA
ATCAGAATCAAGGTCAATAAAGAAATCTGATGAATCCAAGGAACCTAACA
CAAGTTCTTCAAAGCCATTTTCATTTCAATTAAAACCGAAGGTAGAATGT
GTATGTAATGATTTTTTTATTGATTCATCTTTGAAATGCTAATTGTTTGT
AGAACTTAAGGATTGATTGATTGCTCAGCCTGGCTCACATGATTTAGGCT
CTTTAGAATTCTGTACAAAAATACACCTCTTTTTCACATTTCTAAAGACT
TGCTTATTCTTGGATATAAACATCCTTTAAATTCTCATATTTATATATTT
TTATAGACGGAAGAAACAAAACAACAAACTTCTACTTCTAAATCTTTCAC
TGTACAGCTGGATACAAATAAGGTATTTATATAAAATTATAAGACATACC
ATTGTTATTTAAATAAATCAATGGTTAGAATGTTTACCGATTTTAGCATC
CCTATCTATTCTATTGTGATTGAGTTGCAGGAGGCTCTGGAACCCATTAT
CGCAACCATAGATGCTTTGAGTCAGCACCTTGAACTGACTACCCAATTCC
TCTCACATGGCATGGGTTGACCCGGAATCAAGGTTGATTTTCACTATACC
ACGACGCATTTAGTATCCCTGATAAGGAGCAACTTATACAAAAATTGATT
CTAAGATTTATACTGTAAAGACCTTACAATCTTAGTCATTTGCAACTATA
TTCTTTTTCATCAGGTGAAAACGCAAAAGGATCTTCCTGTATTGCAAAAG
CCGAAAGGAAACGTAGCATCTGTTTTCAATAATGACTCAGAGGTGAGTAT
CATTAACTATGGTCTATGCTAAGAATAAGCCCTGCCTCAAAACGCACAAC
AACCTTCTGATGGTACAAAGCTCAAAATAATCGATAACACATTGCTACAT
AATATACAATTTCACAATAAAATTAATTTAACGCCTTTGAGCAAAAAAAA
GAGTAACTTTAAAAGAAAATACTATACTTAAGTGTGAGTCGAAGCTTGAA
GTTTATTGAATTTAAATTTAATTATGAAATTTATTCCAATTCTTTATCAT
TTTTTTTTGAAGTCTGAAGAAGAAGAGATGCCACTGGAAGCTCGCATGAA
AATGAGAAACGTTGGAAGGTTAGATAATTTGACTTTCACATGCACATGTC
TTCCTAAAGTAAACTCTTTTAGGAGGGATAACCATGTCTAGCCTCTATTA
TCCCATCCTCGAGTGCTTATTTTAATCGCCAACTCTACTGAAAAAAGATA
AACATGTATATGTAAAATCAACCACACAACGTTGTTTCAACGTTTATCTA
ACGTTCACAACGTCCATATAACGTTAGATGAACATTGAAACAACGTTGTG
TGCCAGCTGGGTAGTACTCACCAGAGTAATGATTCTGAGGTATTTTTTTT
ATTCTTTAGGGATACCATTACATCGAGTGGTCCGAACTCTTTTGGCAAAG
GAAAAGAAGGATTTACGAAAAACTCATTTAAGAATTTCGAATTATCGATG
AAACCAAGGAACAGTTTTGAAAAGCAGATAGACTACCAAAAAGACTAAAA
GTACACCGGAAGTACTATTCTTCGTCCTCAATTCAATATCAATGGTATGG
CTAGATTACGAATTTTTATGGGTTTTATTTCGATATGAAGTCAGTATGAA
AAAATTTTCCAAAACCTAGGGACAATTATTGGCAAATTTCCTTACTGCCC
CGCTCAGGTTGCGCGCTTTTTAATACCAGTATTTTTAATTTTTATATAAA
TGATATTTATTTCATCACTATGTTAGATATATCAAGTATATTTTGTTCCT
AATGAACCCAACTCAACACTAGAAATATATTTAGATACGGGGAAAATGCC
CCAATAACAAAATTTCAATTTCTATCATGATATTTTCATTTTCATCTGAA
TCATTTTTAAATTTTTTACGTTATCGTTTAATGTCAATGATTCTTATACA
AATCAATCTTCCAGCAAATAATATGTTAACAGTTGAGGATATATATTCAT
TCAACAGTTTAAACAATTTTAAAAGGTTTCTGGATGATCTGCAATGAAGC
AGTTGCTACAACGAGAACTTAAAGGAGATAATAGATGAGTGTTATCTTAG
TCTGTTAGTTTAATATTTCGATGTAGTGATCTTTATTCCTCACTTCGAGT
GGATGGTTCTTTTTCATTCATGCTATATATAACTGATAGATGGTTCTGCT
GCGATCTGGCACACAGATGATATCCAACTCTAAACCATCCAGAAAAATTT
TGAGGTTTACTTTAATTAATGTTTATCGTTGTCTTTTTTCTTGTCATCTT
CATCTTTAGATCGCTCTTTCCAATTCGTTTTATTGATAGTGCCAGGGATT
TTGACTTCAAAAACAGGGAAAACGCTTGTGATTGTGTTCAATAAGATCTT
TGTGACTGTATCTTCAGCCGAGTCTTCAAATTCATCTAATTGTAACGTCG
CCATCTTATTGGTTAAGAGGAAATAACCGAACACAATTTCTGGTAAATTT
TGTACTTTGCCTCGTAAGAGGATAGGTTTATCTGGACTATTTTGTAAAGA
ATCCGCATGTTTCATCAAGTCAGTTGATGCAAAGAATTCAACATTCCAAA
GTCCTCTCTCTTTAATATCTTTTTCATTAAATTCAATCTCATCATAGAAA
GCTGAATTTTCGATGAAATTTCGATTATTGGTTGGAACTTTACCGTTTAT
ACAAAACCACCAGAATGTGAATGCAGTATCTCCAAGGAAATTCCAATCTT
TACCAAGAGAGCTGGCATTCTCAATAGTACCATCATTCCATAATGCAAAA
TTTGATCGAATGCTACCTCGCTTCTTCATACCATAATGCCGTAATGAGAA
TTTCTGTTTCAATAAAGGTGCCAACAATCGTCTGATTTTGTCCAGTTGAG
CTTCCTCGAAGCCTCGGTATTTGACCCAACTTTGCGCCGGATAACCAAGA
TCTCCTGGTTGACTGAAATCTAATCTCATACTAGTAATTTCTTCCATAAA
TGCGAATGGGAAATCATGGTTGTTCTCGTCAAAATCTTCACCGCAACCTC
TGATGAAGATTTTCCTGATTTCTGCTGGTTTTGGGATTTCACCTTTTAAA
CGTACTTTCAATAATTCTGGACGTAATTTGGTGCAGACTCCGTCACCTGT
TTGATGAGAAAAAGTTTATCAGAAAATATTATGGGTTTTCAATACGAATT
TTGATTGAGATTTGGGATGATCAGACTATAATTTGAATTGATGAATTGAT
TCAACTCTGGTTTGAAATGACTCAACTTTCTTTCTGATCGTAGCTGTGAA
GGGCCTATGTGACCTGCTTGTGGCTTCGAAAACAAGTGCCATCTCTAATC
AATTTCCATCTTTCTTCAGTTTAATTATGACCGTTTTAGCAAAAAGTG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
Feature Name | Unique Name | Species | Type |
TCONS_00061220-exon-scaffold_354-1575043694:1140378..1142468 | TCONS_00061220-exon-scaffold_354-1575043694:1140378..1142468 | Clytia hemisphaerica | exon |
TCONS_00061220-exon-scaffold_354-1575043694:1140097..1140162 | TCONS_00061220-exon-scaffold_354-1575043694:1140097..1140162 | Clytia hemisphaerica | exon |
TCONS_00061220-exon-scaffold_354-1575043694:1139677..1139754 | TCONS_00061220-exon-scaffold_354-1575043694:1139677..1139754 | Clytia hemisphaerica | exon |
TCONS_00061220-exon-scaffold_354-1575043694:1139351..1139406 | TCONS_00061220-exon-scaffold_354-1575043694:1139351..1139406 | Clytia hemisphaerica | exon |
TCONS_00061220-exon-scaffold_354-1575043694:1137071..1139059 | TCONS_00061220-exon-scaffold_354-1575043694:1137071..1139059 | Clytia hemisphaerica | exon |
TCONS_00061220-exon-scaffold_354-1510915933:1140378..1142468 | TCONS_00061220-exon-scaffold_354-1510915933:1140378..1142468 | Clytia hemisphaerica | exon |
TCONS_00061220-exon-scaffold_354-1510915933:1140097..1140162 | TCONS_00061220-exon-scaffold_354-1510915933:1140097..1140162 | Clytia hemisphaerica | exon |
TCONS_00061220-exon-scaffold_354-1510915933:1139677..1139754 | TCONS_00061220-exon-scaffold_354-1510915933:1139677..1139754 | Clytia hemisphaerica | exon |
TCONS_00061220-exon-scaffold_354-1510915933:1139351..1139406 | TCONS_00061220-exon-scaffold_354-1510915933:1139351..1139406 | Clytia hemisphaerica | exon |
TCONS_00061220-exon-scaffold_354-1510915933:1137071..1139059 | TCONS_00061220-exon-scaffold_354-1510915933:1137071..1139059 | Clytia hemisphaerica | exon |
TCONS_00061220-exon-scaffold_354-1491911889:1140378..1142468 | TCONS_00061220-exon-scaffold_354-1491911889:1140378..1142468 | Clytia hemisphaerica | exon |
TCONS_00061220-exon-scaffold_354-1491911889:1140097..1140162 | TCONS_00061220-exon-scaffold_354-1491911889:1140097..1140162 | Clytia hemisphaerica | exon |
TCONS_00061220-exon-scaffold_354-1491911889:1139677..1139754 | TCONS_00061220-exon-scaffold_354-1491911889:1139677..1139754 | Clytia hemisphaerica | exon |
TCONS_00061220-exon-scaffold_354-1491911889:1139351..1139406 | TCONS_00061220-exon-scaffold_354-1491911889:1139351..1139406 | Clytia hemisphaerica | exon |
TCONS_00061220-exon-scaffold_354-1491911889:1137071..1139059 | TCONS_00061220-exon-scaffold_354-1491911889:1137071..1139059 | Clytia hemisphaerica | exon |
Position
The following features are aligned
Aligned Feature | Feature Type | Alignment Location |
scaffold_354 | supercontig | scaffold_354:1137071..1142468 - |
Blast
The following BLAST results are available for this feature:
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