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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00061228 ID=TCONS_00061228|Name=TCONS_00061228|organism=Clytia hemisphaerica|type=transcript|length=1099bp
TCTGGGAATTTCAGCGTTTCGTAGAATTTGAAGTTCTGATGGGGAATGTC
ATTTTCAGGCTTTCTATcgggtgtttcaaaaaaggTAAAGTTTGAGCCAA
CTTACAATTTTATGAATCTAAACTTTTTACCATCAGAAACAGGAAAGCAT
AACCTAAATTCTGTTTATATCTTAAATCCGTTTCACGTGTTGGAAAGTTA
TGTGCAAGCTCTCTTTTGAAAAAGCAAAATTCAAGCTTACAACAAGCTTC
TTTCTGACATATTCAGTTGTAGATATAGAAAGCTTTTTATGTGCTTTAAA
TTAAATCATGGATAGTTGCAATGAATTTGATTAAACAATCTGTTGTGTGA
GTGAATTTAAAAGCAACCATTTCTCACAATTCTTCTTGTGTGGTGTAAGA
TATTTATCTTACATCAGGTATTTATCTTACTTTTTTCCCATTCAACTTTA
AAATCTAGAAGAAATTATACTGAGGAAATTTGTAATTTTACTTGTTGTTT
TTAATGTTCCTGCACACAGGCAGTTGAGAAAATTTGCTGTATTCTTAAAG
TCAATAAGATCTTTTGTCTTTCGATTAGATGTCCTCTACAAATAAGTGAT
TGAAAATCTTCCAGGTTTCTTCCGCTCATTTATGTCCaggattttttgca
ttttcaaaaGACGGTCTTagagaagaaaagaagaaacttttgatgttagg
aataaaaatgaaaattgcctcTACTTTTAAGACACATGCGAACAGGATCA
GAATTCCCTAGATATTTTCGAGACATTAACTACTATTCAAGGATTTGATC
TATGcaaggttttgaaaatttatttttaaaaattataacttaaattcttt
aaaCATTTCACAGTCCTCCTCTCAGACACATCAACTGTAACACAGAAGTC
CATCTTGTTTGTTTGGTAGACATCGAAACAATCTTTTTCCAACGACGCAG
TCCCTGACTGAATACAGAGAATAAAccaataataaataataaaataaata
gtTACAGATTtagataaaattaaatttatatACTTAGTACTTAAATTGAT
GACCTAAACATGTACattcattcaacattcattcaacatTCTACTTTCC Run BLAST on NCBI transcript from alignment at scaffold_354:58322..59420 Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00061228 ID=TCONS_00061228|Name=TCONS_00061228|organism=Clytia hemisphaerica|type=transcript|length=1099bp|location=Sequence derived from alignment at scaffold_354:58322..59420 (Clytia hemisphaerica)
GGAAAGTAGAatgttgaatgaatgttgaatgaatGTACATGTTTAGGTCA
TCAATTTAAGTACTAAGTatataaatttaattttatctaAATCTGTAact
atttattttattatttattattggTTTATTCTCTGTATTCAGTCAGGGAC
TGCGTCGTTGGAAAAAGATTGTTTCGATGTCTACCAAACAAACAAGATGG
ACTTCTGTGTTACAGTTGATGTGTCTGAGAGGAGGACTGTGAAATGttta
aagaatttaagttataatttttaaaaataaattttcaaaaccttgCATAG
ATCAAATCCTTGAATAGTAGTTAATGTCTCGAAAATATCTAGGGAATTCT
GATCCTGTTCGCATGTGTCTTAAAAGTAgaggcaattttcatttttattc
ctaacatcaaaagtttcttcttttcttctctAAGACCGTCttttgaaaat
gcaaaaaatcctGGACATAAATGAGCGGAAGAAACCTGGAAGATTTTCAA
TCACTTATTTGTAGAGGACATCTAATCGAAAGACAAAAGATCTTATTGAC
TTTAAGAATACAGCAAATTTTCTCAACTGCCTGTGTGCAGGAACATTAAA
AACAACAAGTAAAATTACAAATTTCCTCAGTATAATTTCTTCTAGATTTT
AAAGTTGAATGGGAAAAAAGTAAGATAAATACCTGATGTAAGATAAATAT
CTTACACCACACAAGAAGAATTGTGAGAAATGGTTGCTTTTAAATTCACT
CACACAACAGATTGTTTAATCAAATTCATTGCAACTATCCATGATTTAAT
TTAAAGCACATAAAAAGCTTTCTATATCTACAACTGAATATGTCAGAAAG
AAGCTTGTTGTAAGCTTGAATTTTGCTTTTTCAAAAGAGAGCTTGCACAT
AACTTTCCAACACGTGAAACGGATTTAAGATATAAACAGAATTTAGGTTA
TGCTTTCCTGTTTCTGATGGTAAAAAGTTTAGATTCATAAAATTGTAAGT
TGGCTCAAACTTTAccttttttgaaacacccgATAGAAAGCCTGAAAATG
ACATTCCCCATCAGAACTTCAAATTCTACGAAACGCTGAAATTCCCAGA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00061228-exon-scaffold_354-1491911889:58322..59420 | TCONS_00061228-exon-scaffold_354-1491911889:58322..59420 | Clytia hemisphaerica | exon |
| TCONS_00061228-exon-scaffold_354-1510915933:58322..59420 | TCONS_00061228-exon-scaffold_354-1510915933:58322..59420 | Clytia hemisphaerica | exon |
| TCONS_00061228-exon-scaffold_354-1575043694:58322..59420 | TCONS_00061228-exon-scaffold_354-1575043694:58322..59420 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_354 | supercontig | scaffold_354:58322..59420 . |
Blast
The following BLAST results are available for this feature:
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