TCONS_00061254 (transcript) - C. hemisphaerica

Overview
NameTCONS_00061254
Unique NameTCONS_00061254
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length318

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00061254 ID=TCONS_00061254|Name=TCONS_00061254|organism=Clytia hemisphaerica|type=transcript|length=318bp
TTGAGATATCAAAGACGAACTATCCTTCTCACTAATTAAAACAATACTGA
TTTTGAACAATAGCTTTCTTTACATTAGCTATTTCAATATTTGTATAACT
TAGTCATAAAATTCTCCTCTTAGAAAGTAGGGAAAGTACCcatgaatttg
aataaaataattctttattgATAGAAGCATAACagttcttttttctgaaa
actattGAAACTAACAACCTCCAAACTTCCCTACATACTTGATAAGCAGG
GAAATACCTTCAATTGGAAGGGGGAACTTTTCAATACTGTCAGATACTGT
AAGCCATAACAAGGAAAT
Run BLAST on NCBI

transcript from alignment at scaffold_354:768939..769256

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00061254 ID=TCONS_00061254|Name=TCONS_00061254|organism=Clytia hemisphaerica|type=transcript|length=318bp|location=Sequence derived from alignment at scaffold_354:768939..769256 (Clytia hemisphaerica)
ATTTCCTTGTTATGGCTTACAGTATCTGACAGTATTGAAAAGTTCCCCCT
TCCAATTGAAGGTATTTCCCTGCTTATCAAGTATGTAGGGAAGTTTGGAG
GTTGTTAGTTTCaatagttttcagaaaaaagaactGTTATGCTTCTATca
ataaagaattattttattcaaattcatgGGTACTTTCCCTACTTTCTAAG
AGGAGAATTTTATGACTAAGTTATACAAATATTGAAATAGCTAATGTAAA
GAAAGCTATTGTTCAAAATCAGTATTGTTTTAATTAGTGAGAAGGATAGT
TCGTCTTTGATATCTCAA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_038424XLOC_038424Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00061254-exon-scaffold_354-1491911889:768939..769256TCONS_00061254-exon-scaffold_354-1491911889:768939..769256Clytia hemisphaericaexon
TCONS_00061254-exon-scaffold_354-1510915933:768939..769256TCONS_00061254-exon-scaffold_354-1510915933:768939..769256Clytia hemisphaericaexon
TCONS_00061254-exon-scaffold_354-1575043694:768939..769256TCONS_00061254-exon-scaffold_354-1575043694:768939..769256Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_354supercontigscaffold_354:768939..769256 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
3.32584	2.53136	0.716054	1.28199	1.11903	0.346796	0.614998	0.892784	0.552563	0.377206	0.98912	0.740386	0	0.832603	0.780131	0	0	0	0.691883	0	1.97829	2.28533	1.42542	0.223784	0	1.22694	3.57349	4.9387	1.02867	0.591645
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00061254 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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