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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00061273 ID=TCONS_00061273|Name=TCONS_00061273|organism=Clytia hemisphaerica|type=transcript|length=2864bp
CGGATAGCTAggtgaaaaaattcaataacaaaggCTTGAAATTTCAGCTG
TGGAAGCAAGATAACTATAGGGAGCACACTTACCACACACTTAGCCCTTA
AGAGGACTAACAAAACTTCGTAAGCAAAGAAAACATACTATAATTATTTT
AATTCAAGTATGAAAGTTTTATGTCTTAAATAATACTTTTGTTAAATAAT
TCCTTTACATATAATAAACATCCCCTTTTCTCAGACCCCTTAGGATTTTT
TTTAGTCAATGGGGGTAAAAATGACGGGCTGAAAAACTTGATGGGATTGA
Tactttcatgttttttatagctggggatttaaatccattttgttttcaag
tcaaaaaattaagtggggatggaaaaaatagcacaatatttttcagtgag
gattagtttatttgattattgattTCTATCGGGGACAAAATGAGggaaaa
tattttggccaacttttccagtgggggagaggtctgtgagaaggaggtgt
taATAAgctaatttacaaattttggcagtctaatattttgaaaataaggt
attgtatttaaaaataaattaaatatactttttcaattctaatataataa
aataaaaagataaaatcttgaaaaaaatatgaaaatgcgTACTCAactga
attaaaaaatataaatatatgaACGAAAAAATACACGTATAAATATCCAg
gcttaaaaaaagtttggtgTTGCATAAGCATTTTGCTGTTCCTGAAACCA
TTTCGATCattaaatttgccaaaattacaaaaacaaaattaatttgatCA
TAATATGTGCGTATCTATAATATGCACAAAAGATTAGAATATTCAAGGCT
CAAAAGTTTTACACTATGCTAAGAACACGTATAATGTGTTATCGGCGATC
TAAAAAATATcagcaatttgattggttaaaaagagtacttcttgtatttt
acatgtaaaaatataaattgaagaTGTTGACGCGCTgctttttttccaac
acaaaaagtgcatttttgggtcaccgataaatcAGTTATCAGACGCAAGC
TCGTATacaatacaaaaatattttactcgttccgattttttttgcatatt
cCATTGAGCAAAAAGATCTCCGAACTCATAAAATATGTCTTGTATTGTAC
TCGCATGTGTCTGATAACTATTACTAATCGAGGCTTGTCAGTCATCGATA
AATGAAACAAACAAAACGAACATGACTAAAGATTTACAAGCGTAAAGGTG
TGCCTAAATCAATGCCAAATACTTATAAGAAATTATAGAAGACCACTACA
ACTGGAAAATTGGACTTAAATAGCTATATCAATTTCTAACAAATAAAATG
GTCCTCAAATATACGTATTGTTCtcatcctgttcttatttcttgGGTGAA
AATAATGCATTTTAGGCTAGTAATCATCATGTTAGAATTTCATCACGTAA
TAAGTAAAAAGCCTCCAACTCACGCATTAACATTTTCGGTAAATTTTGTT
GCAGAAGCACGTCATAAGTAAAAGATGACGTAATCGCATTCTTACATATA
TCTTTCAGGGTAGTACCACGCCAAGTACGGAAATCAACACAAAGATATTC
AGTATCATAACTTCTTTCATAAGTACCtaccattttgatgacgtcacctt
TAGTAGACATTTGCATGGACAATTTATGAGTCCAAAAACATGGTACATAG
CTCAATATCTGAGTAGCCTTACATGAAAGCAGGTCAATAACAGTGACATA
GGCTTCTGACGATAAAATTAAAGCTTTCATTCCACGATGATGTGTCCATA
TCTCAATGTAGTCATCGGTGATATAATTTTTATACTGTTGCAAAGAGCAT
GACAAATCGATACACCCAGTCAATTTCATCTCAGGCTCAAAAACACCCGT
ATAAAAAATGGGCGGATGAACTTTATCAGGTTTTTTGGGAAGGACGAAAA
ACATTTTACCAACCAAATGCAATTCTTGGGCTTCAACTATTTCTGGAAtg
tcaaactttttttcggacAAGCAATGTTTTTGCGTATCATACAACACATA
TTTTTGAGACCTTAAAAATAACATGACTCGATTAGAAAACTTTACCTCAC
TCATTAAAACATTCATATTATTGAACTTTAAAGACAAGCTGTGTTTAACT
ACACTACAATTCTCACATGAAGCGTTCGGTAAAATATACAAAACTTCAGG
CGTTTGCTGGGGAATCAAAGGCGGCATCTGTACCACCCATAATGCACCAT
TCCGTAGCCTCAGTTTGATGTTAGTATAAAACATAACTAATTTCATGGAA
TGCGTTTTCCCTGTAACCAAATCCATGTAACATAATTTTAAAGATGGTGC
AGCAAATTTAAGTAAAATAATACAACGGTCATCAGCCATGTAACAATTAT
CatttaaaatgacgtcatcaaatttatCTCTTTCAAAATGGTGGGTATAT
TGGTTTGGGTCACAATTCTTGATTCGTCTTTTATCATGGAAAACAATTGC
ATAACTTCGCAAATTCTCCATAACATGCTCATACTTTGTTTCATCATATT
TTTTCAAGTACCATGAAAAACCTCTTTTTAACAATCTCCTACATTCTCTG
GGCTCAGGCTTTGGTTTTGgtttcaatttcaaacaattatATGTTCTCTT
TGATTGCTTCTTTCCAGTTGTAACTTTTTCCTCTTCCTCCATTGCAGTTG
CTTCACAAATTGGAATCAAATCTGTTTTATTGTTTCGTTCATAGCTTTCC
CAGAATGAAACATTATGTATACTTTGTAACATTTTTTCTTCATAActcta
aagaaaataaaatttctgaaaattaagaattatgaaaaaagttttttttt
aaatggtattCCAG Run BLAST on NCBI protein sequence of TCONS_00061273-protein >TCONS_00061273-protein ID=TCONS_00061273-protein|Name=TCONS_00061273-protein|organism=Clytia hemisphaerica|type=polypeptide|length=451bp
MLQSIHNVSFWESYERNNKTDLIPICEATAMEEEEKVTTGKKQSKRTYNC
LKLKPKPKPEPRECRRLLKRGFSWYLKKYDETKYEHVMENLRSYAIVFHD
KRRIKNCDPNQYTHHFERDKFDDVILNDNCYMADDRCIILLKFAAPSLKL
CYMDLVTGKTHSMKLVMFYTNIKLRLRNGALWVVQMPPLIPQQTPEVLYI
LPNASCENCSVVKHSLSLKFNNMNVLMSEVKFSNRVMLFLRSQKYVLYDT
QKHCLSEKKFDIPEIVEAQELHLVGKMFFVLPKKPDKVHPPIFYTGVFEP
EMKLTGCIDLSCSLQQYKNYITDDYIEIWTHHRGMKALILSSEAYVTVID
LLSCKATQILSYVPCFWTHKLSMQMSTKGDVIKMVGTYERSYDTEYLCVD
FRTWRGTTLKDICKNAITSSFTYDVLLQQNLPKMLMRELEAFYLLRDEIL
T Run BLAST on NCBI transcript from alignment at scaffold_354:1181884..1184747 Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00061273 ID=TCONS_00061273|Name=TCONS_00061273|organism=Clytia hemisphaerica|type=transcript|length=2864bp|location=Sequence derived from alignment at scaffold_354:1181884..1184747 (Clytia hemisphaerica)
CTGGaataccatttaaaaaaaaacttttttcataattcttaattttcaga
aattttattttctttagagTTATGAAGAAAAAATGTTACAAAGTATACAT
AATGTTTCATTCTGGGAAAGCTATGAACGAAACAATAAAACAGATTTGAT
TCCAATTTGTGAAGCAACTGCAATGGAGGAAGAGGAAAAAGTTACAACTG
GAAAGAAGCAATCAAAGAGAACATataattgtttgaaattgaaacCAAAA
CCAAAGCCTGAGCCCAGAGAATGTAGGAGATTGTTAAAAAGAGGTTTTTC
ATGGTACTTGAAAAAATATGATGAAACAAAGTATGAGCATGTTATGGAGA
ATTTGCGAAGTTATGCAATTGTTTTCCATGATAAAAGACGAATCAAGAAT
TGTGACCCAAACCAATATACCCACCATTTTGAAAGAGataaatttgatga
cgtcattttaaatGATAATTGTTACATGGCTGATGACCGTTGTATTATTT
TACTTAAATTTGCTGCACCATCTTTAAAATTATGTTACATGGATTTGGTT
ACAGGGAAAACGCATTCCATGAAATTAGTTATGTTTTATACTAACATCAA
ACTGAGGCTACGGAATGGTGCATTATGGGTGGTACAGATGCCGCCTTTGA
TTCCCCAGCAAACGCCTGAAGTTTTGTATATTTTACCGAACGCTTCATGT
GAGAATTGTAGTGTAGTTAAACACAGCTTGTCTTTAAAGTTCAATAATAT
GAATGTTTTAATGAGTGAGGTAAAGTTTTCTAATCGAGTCATGTTATTTT
TAAGGTCTCAAAAATATGTGTTGTATGATACGCAAAAACATTGCTTgtcc
gaaaaaaagtttgacaTTCCAGAAATAGTTGAAGCCCAAGAATTGCATTT
GGTTGGTAAAATGTTTTTCGTCCTTCCCAAAAAACCTGATAAAGTTCATC
CGCCCATTTTTTATACGGGTGTTTTTGAGCCTGAGATGAAATTGACTGGG
TGTATCGATTTGTCATGCTCTTTGCAACAGTATAAAAATTATATCACCGA
TGACTACATTGAGATATGGACACATCATCGTGGAATGAAAGCTTTAATTT
TATCGTCAGAAGCCTATGTCACTGTTATTGACCTGCTTTCATGTAAGGCT
ACTCAGATATTGAGCTATGTACCATGTTTTTGGACTCATAAATTGTCCAT
GCAAATGTCTACTAaaggtgacgtcatcaaaatggtaGGTACTTATGAAA
GAAGTTATGATACTGAATATCTTTGTGTTGATTTCCGTACTTGGCGTGGT
ACTACCCTGAAAGATATATGTAAGAATGCGATTACGTCATCTTTTACTTA
TGACGTGCTTCTGCAACAAAATTTACCGAAAATGTTAATGCGTGAGTTGG
AGGCTTTTTACTTATTACGTGATGAAATTCTAACATGATGATTACTAGCC
TAAAATGCATTATTTTCACCcaagaaataagaacaggatgaGAACAATAC
GTATATTTGAGGACCATTTTATTTGTTAGAAATTGATATAGCTATTTAAG
TCCAATTTTCCAGTTGTAGTGGTCTTCTATAATTTCTTATAAGTATTTGG
CATTGATTTAGGCACACCTTTACGCTTGTAAATCTTTAGTCATGTTCGTT
TTGTTTGTTTCATTTATCGATGACTGACAAGCCTCGATTAGTAATAGTTA
TCAGACACATGCGAGTACAATACAAGACATATTTTATGAGTTCGGAGATC
TTTTTGCTCAATGgaatatgcaaaaaaaatcggaacgagtaaaatatttt
tgtattgtATACGAGCTTGCGTCTGATAACTgatttatcggtgacccaaa
aatgcactttttgtgttggaaaaaaagcAGCGCGTCAACAtcttcaattt
atatttttacatgtaaaatacaagaagtactctttttaaccaatcaaatt
gctgATATTTTTTAGATCGCCGATAACACATTATACGTGTTCTTAGCATA
GTGTAAAACTTTTGAGCCTTGAATATTCTAATCTTTTGTGCATATTATAG
ATACGCACATATTATGatcaaattaattttgtttttgtaattttggcaaa
tttaatGATCGAAATGGTTTCAGGAACAGCAAAATGCTTATGCAAcacca
aactttttttaagccTGGATATTTATACGTGTATTTTTTCGTtcatatat
ttatattttttaattcagtTGAGTAcgcattttcatatttttttcaagat
tttatctttttattttattatattagaattgaaaaagtatatttaattta
tttttaaatacaataccttattttcaaaatattagactgccaaaatttgt
aaattagcTTATtaacacctccttctcacagacctctcccccactggaaa
agttggccaaaatattttccCTCATTTTGTCCCCGATAGAaatcaataat
caaataaactaatcctcactgaaaaatattgtgctattttttccatcccc
acttaattttttgacttgaaaacaaaatggatttaaatccccagctataa
aaaacatgaaagtATCAATCCCATCAAGTTTTTCAGCCCGTCATTTTTAC
CCCCATTGACTAAAAAAAATCCTAAGGGGTCTGAGAAAAGGGGATGTTTA
TTATATGTAAAGGAATTATTTAACAAAAGTATTATTTAAGACATAAAACT
TTCATACTTGAATTAAAATAATTATAGTATGTTTTCTTTGCTTACGAAGT
TTTGTTAGTCCTCTTAAGGGCTAAGTGTGTGGTAAGTGTGCTCCCTATAG
TTATCTTGCTTCCACAGCTGAAATTTCAAGcctttgttattgaatttttt
caccTAGCTATCCG Coding sequence (CDS) from alignment at scaffold_354:1181884..1184747 >TCONS_00061273 ID=TCONS_00061273|Name=TCONS_00061273|organism=Clytia hemisphaerica|type=CDS|length=1356bp|location=Sequence derived from alignment at scaffold_354:1181884..1184747 (Clytia hemisphaerica)
ATGTTACAAAGTATACATAATGTTTCATTCTGGGAAAGCTATGAACGAAA
CAATAAAACAGATTTGATTCCAATTTGTGAAGCAACTGCAATGGAGGAAG
AGGAAAAAGTTACAACTGGAAAGAAGCAATCAAAGAGAACATataattgt
ttgaaattgaaacCAAAACCAAAGCCTGAGCCCAGAGAATGTAGGAGATT
GTTAAAAAGAGGTTTTTCATGGTACTTGAAAAAATATGATGAAACAAAGT
ATGAGCATGTTATGGAGAATTTGCGAAGTTATGCAATTGTTTTCCATGAT
AAAAGACGAATCAAGAATTGTGACCCAAACCAATATACCCACCATTTTGA
AAGAGataaatttgatgacgtcattttaaatGATAATTGTTACATGGCTG
ATGACCGTTGTATTATTTTACTTAAATTTGCTGCACCATCTTTAAAATTA
TGTTACATGGATTTGGTTACAGGGAAAACGCATTCCATGAAATTAGTTAT
GTTTTATACTAACATCAAACTGAGGCTACGGAATGGTGCATTATGGGTGG
TACAGATGCCGCCTTTGATTCCCCAGCAAACGCCTGAAGTTTTGTATATT
TTACCGAACGCTTCATGTGAGAATTGTAGTGTAGTTAAACACAGCTTGTC
TTTAAAGTTCAATAATATGAATGTTTTAATGAGTGAGGTAAAGTTTTCTA
ATCGAGTCATGTTATTTTTAAGGTCTCAAAAATATGTGTTGTATGATACG
CAAAAACATTGCTTgtccgaaaaaaagtttgacaTTCCAGAAATAGTTGA
AGCCCAAGAATTGCATTTGGTTGGTAAAATGTTTTTCGTCCTTCCCAAAA
AACCTGATAAAGTTCATCCGCCCATTTTTTATACGGGTGTTTTTGAGCCT
GAGATGAAATTGACTGGGTGTATCGATTTGTCATGCTCTTTGCAACAGTA
TAAAAATTATATCACCGATGACTACATTGAGATATGGACACATCATCGTG
GAATGAAAGCTTTAATTTTATCGTCAGAAGCCTATGTCACTGTTATTGAC
CTGCTTTCATGTAAGGCTACTCAGATATTGAGCTATGTACCATGTTTTTG
GACTCATAAATTGTCCATGCAAATGTCTACTAaaggtgacgtcatcaaaa
tggtaGGTACTTATGAAAGAAGTTATGATACTGAATATCTTTGTGTTGAT
TTCCGTACTTGGCGTGGTACTACCCTGAAAGATATATGTAAGAATGCGAT
TACGTCATCTTTTACTTATGACGTGCTTCTGCAACAAAATTTACCGAAAA
TGTTAATGCGTGAGTTGGAGGCTTTTTACTTATTACGTGATGAAATTCTA
ACATGA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00061273-exon-scaffold_354-1491911889:1181884..1184747 | TCONS_00061273-exon-scaffold_354-1491911889:1181884..1184747 | Clytia hemisphaerica | exon |
| TCONS_00061273-exon-scaffold_354-1510915933:1181884..1184747 | TCONS_00061273-exon-scaffold_354-1510915933:1181884..1184747 | Clytia hemisphaerica | exon |
| TCONS_00061273-exon-scaffold_354-1575043694:1181884..1184747 | TCONS_00061273-exon-scaffold_354-1575043694:1181884..1184747 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_354 | supercontig | scaffold_354:1181884..1184747 . |
Blast
The following BLAST results are available for this feature:
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