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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00061274 ID=TCONS_00061274|Name=TCONS_00061274|organism=Clytia hemisphaerica|type=transcript|length=927bp
GAGGGCTTGGACCGTTGTTTGAGGGCTTGGACCGCTATTTTGAGCCGCAG
AATACTTTTCGGAGGGCTACGACCGCTAAAGTAGGGCTTGGGCCGCTGGC
GCAATCATAGAATTCTAAAAAGAGGGCTTGGACCGCTAAATGAGGGCTTG
GGTcgcttacggaaaaaaattttgcgtTGGCCGAAACGCTCTTTTAACAG
TTCTAGAGCTTTTGAATAGTTTTCGCTCGATAAATGAAATCCCTTCAATA
AATTTTCTGCCTCTCCTTCGAGGTAACCCAACAAATAATTAAGTTTTTGT
ACATCTGGGATGCTTTTTTCATTGTGAACAGCAACGTTAAACGATTCTAT
GAATGACTGGTAATCAGCAGGCTTCCCAgaaaattgtttgaagtttCACG
TCGGAAGTCGGAAGTTTCAcgtttgtttttgcttttgcGACAAATTGGAC
AGAACTTACAGGAGTAGAAAGCTCGacatttgaagaccccccaccAGTGC
TCTTTCCCCTAGAAAATTTGGTAACAAAATTCTCAATCTTATGTATTTCG
TAGTTTGTTTTGACTTCGTAATCCAATGCGTCATTCATAATCAAATTGTA
ATCATCATCCTCGGTTTCTTCATCTGCAATTTCTTGGTATAACTCCATga
tacttttcaatttttctttgacagtgtttttcaaaacaacgagatattca
attttgtaATTCACTAACTTTGACTGTACAGTAGTCATAATCTCTTTGAT
ATCTCCTTCTAATAATTTCTTAACATACGAGAGTCCAGCACGCTgtctct
ttgaatttttttcagccattttaaatcaataactcaataaccaaataatc
aaataatcaaataatcaaaatttgtttttcttatttgttgttgttgtatg
tTTTCTATATCTCTTCCAACAACCAAA Run BLAST on NCBI protein sequence of TCONS_00061274-protein >TCONS_00061274-protein ID=TCONS_00061274-protein|Name=TCONS_00061274-protein|organism=Clytia hemisphaerica|type=polypeptide|length=151bp
MAEKNSKRQRAGLSYVKKLLEGDIKEIMTTVQSKLVNYKIEYLVVLKNTV
KEKLKSIMELYQEIADEETEDDDYNLIMNDALDYEVKTNYEIHKIENFVT
KFSRGKSTGGGSSNVELSTPVSSVQFVAKAKTNVKLPTSDVKLQTIFWEA
C Run BLAST on NCBI transcript from alignment at scaffold_354:1197637..1198563 Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00061274 ID=TCONS_00061274|Name=TCONS_00061274|organism=Clytia hemisphaerica|type=transcript|length=927bp|location=Sequence derived from alignment at scaffold_354:1197637..1198563 (Clytia hemisphaerica)
TTTGGTTGTTGGAAGAGATATAGAAAacatacaacaacaacaaataagaa
aaacaaattttgattatttgattatttgattatttggttattgagttatt
gatttaaaatggctgaaaaaaattcaaagagacAGCGTGCTGGACTCTCG
TATGTTAAGAAATTATTAGAAGGAGATATCAAAGAGATTATGACTACTGT
ACAGTCAAAGTTAGTGAATtacaaaattgaatatctcgttgttttgaaaa
acactgtcaaagaaaaattgaaaagtatcATGGAGTTATACCAAGAAATT
GCAGATGAAGAAACCGAGGATGATGATTACAATTTGATTATGAATGACGC
ATTGGATTACGAAGTCAAAACAAACTACGAAATACATAAGATTGAGAATT
TTGTTACCAAATTTTCTAGGGGAAAGAGCACTggtggggggtcttcaaat
gtCGAGCTTTCTACTCCTGTAAGTTCTGTCCAATTTGTCgcaaaagcaaa
aacaaacgTGAAACTTCCGACTTCCGACGTGaaacttcaaacaattttcT
GGGAAGCCTGCTGATTACCAGTCATTCATAGAATCGTTTAACGTTGCTGT
TCACAATGAAAAAAGCATCCCAGATGTACAAAAACTTAATTATTTGTTGG
GTTACCTCGAAGGAGAGGCAGAAAATTTATTGAAGGGATTTCATTTATCG
AGCGAAAACTATTCAAAAGCTCTAGAACTGTTAAAAGAGCGTTTCGGCCA
acgcaaaatttttttccgtaagcgACCCAAGCCCTCATTTAGCGGTCCAA
GCCCTCTTTTTAGAATTCTATGATTGCGCCAGCGGCCCAAGCCCTACTTT
AGCGGTCGTAGCCCTCCGAAAAGTATTCTGCGGCTCAAAATAGCGGTCCA
AGCCCTCAAACAACGGTCCAAGCCCTC Coding sequence (CDS) from alignment at scaffold_354:1197637..1198563 >TCONS_00061274 ID=TCONS_00061274|Name=TCONS_00061274|organism=Clytia hemisphaerica|type=CDS|length=456bp|location=Sequence derived from alignment at scaffold_354:1197637..1198563 (Clytia hemisphaerica)
atggctgaaaaaaattcaaagagacAGCGTGCTGGACTCTCGTATGTTAA
GAAATTATTAGAAGGAGATATCAAAGAGATTATGACTACTGTACAGTCAA
AGTTAGTGAATtacaaaattgaatatctcgttgttttgaaaaacactgtc
aaagaaaaattgaaaagtatcATGGAGTTATACCAAGAAATTGCAGATGA
AGAAACCGAGGATGATGATTACAATTTGATTATGAATGACGCATTGGATT
ACGAAGTCAAAACAAACTACGAAATACATAAGATTGAGAATTTTGTTACC
AAATTTTCTAGGGGAAAGAGCACTggtggggggtcttcaaatgtCGAGCT
TTCTACTCCTGTAAGTTCTGTCCAATTTGTCgcaaaagcaaaaacaaacg
TGAAACTTCCGACTTCCGACGTGaaacttcaaacaattttcTGGGAAGCC
TGCTGA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00061274-exon-scaffold_354-1491911889:1197637..1198563 | TCONS_00061274-exon-scaffold_354-1491911889:1197637..1198563 | Clytia hemisphaerica | exon |
| TCONS_00061274-exon-scaffold_354-1510915933:1197637..1198563 | TCONS_00061274-exon-scaffold_354-1510915933:1197637..1198563 | Clytia hemisphaerica | exon |
| TCONS_00061274-exon-scaffold_354-1575043694:1197637..1198563 | TCONS_00061274-exon-scaffold_354-1575043694:1197637..1198563 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_354 | supercontig | scaffold_354:1197637..1198563 . |
Blast
The following BLAST results are available for this feature:
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