TCONS_00061275 (transcript) - C. hemisphaerica

Overview
NameTCONS_00061275
Unique NameTCONS_00061275
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length220

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00061275 ID=TCONS_00061275|Name=TCONS_00061275|organism=Clytia hemisphaerica|type=transcript|length=220bp
NNCTTCTTCAATCACACCTAATTCAATCTGTTCTTTGATAATTGTATCAT
AAGTTTTCAAAAGTTCCTCATTCGATTTGAAATGTTTCAGAAGCACTGAT
CTGAGTCATTTTTGAATTATCATTCAAAATTTCGTACTGTTCGAGAAATG
GTAGGGAGACCTTATAACGTTTAGCCTCATCATTAAAAGAAATatcattt
tcgaaattttcaatagCAGN
Run BLAST on NCBI

transcript from alignment at scaffold_354:1210482..1210701

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00061275 ID=TCONS_00061275|Name=TCONS_00061275|organism=Clytia hemisphaerica|type=transcript|length=220bp|location=Sequence derived from alignment at scaffold_354:1210482..1210701 (Clytia hemisphaerica)
NCTGctattgaaaatttcgaaaatgatATTTCTTTTAATGATGAGGCTAA
ACGTTATAAGGTCTCCCTACCATTTCTCGAACAGTACGAAATTTTGAATG
ATAATTCAAAAATGACTCAGATCAGTGCTTCTGAAACATTTCAAATCGAA
TGAGGAACTTTTGAAAACTTATGATACAATTATCAAAGAACAGATTGAAT
TAGGTGTGATTGAAGAAGNN
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_038445XLOC_038445Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00061275-exon-scaffold_354-1491911889:1210482..1210701TCONS_00061275-exon-scaffold_354-1491911889:1210482..1210701Clytia hemisphaericaexon
TCONS_00061275-exon-scaffold_354-1510915933:1210482..1210701TCONS_00061275-exon-scaffold_354-1510915933:1210482..1210701Clytia hemisphaericaexon
TCONS_00061275-exon-scaffold_354-1575043694:1210482..1210701TCONS_00061275-exon-scaffold_354-1575043694:1210482..1210701Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_354supercontigscaffold_354:1210482..1210701 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
1.23713	2.41279	0	0	6.67335	3.95503	4.77157	2.97806	4.17002	0	3.76013	0.823921	4.11388	1.70892	4.2149	4.55054	0.928708	2.85569	0	0	1.19613	3.50057	1.41847	0	7.9695	11.6945	0	0	0	0
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00061275 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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