TCONS_00061338 (transcript) - C. hemisphaerica

Overview
NameTCONS_00061338
Unique NameTCONS_00061338
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length973

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00061338 ID=TCONS_00061338|Name=TCONS_00061338|organism=Clytia hemisphaerica|type=transcript|length=973bp
TGGATCTCCCATGCAGGCACATCTTTCTCTCGAGATCATTGTCAGGGTGT
GTGCCTCTTTTCGATCCCGTTCTTTGCGCCGTTCGATGGTCGAAAACTTA
TTATCGTCAAAGCCAACGGCTGTTTACACAAACAATCAATAAATTTGACA
AGTTAACGACCACTTCGTCTTCATTCCGCCCTCTAAAAGCCCTTAACTTT
AACGAAAGATATAGAAAGGCAGACGctgtatgcaaaaatatttcGATGTT
GGCTTCAGAGCCTGGAGGCACAGAATTTGTCGAGCGAATGACCCTTCTTA
GAACACTTGAAGACATGTGGCGAAATGGTCAAGAGGTTCATTTACTTTCG
CTACCATTGAAATCAACGGAGAACGAAAATCCTTTTTCATCTTTCTCTCA
AGATCATTGTCAGGGTGACAAAGACAATACCAGTGACAAAACTTTGCCTA
AAGTCCCGAAGATTCAACCCGGGAACCCAAATGTTACTGGCGTCATCAAC
AATTCGCCTTTGAAATCAACGGAGAACGAAAATCCTTTTTCGTCTATCTC
TTCAAATCATTGTCAGGGTCACATAGACAATACCAGTGACAAAGATTCGC
CCAAAGTCACAAAGATTCAGCCTGAGGTAAATCATAACCTACCGGCATCG
GCAAATGAAGTTTCTCTAAAAGAGTCTTTTCATAACCAAAGCGACAAGCA
TATCGACATTCAAGATTTTGATGTCAGTAATGTTAAATTACCACCAAGGA
AAAAGCCGAGAGGAAGACCAAAAGGACACAATTTAACAGTCATCGGAAGA
CAGAAGAAACGGAAATTGAATAATGGTCGCAAAGATAATACGAATAACAA
AGCTTTGCCCAAAGTCCCGAAGATTCAACCCGAGAACCCAAATGTTACTG
GCGTCATCAACAATTCGCCTTTGAAATCAACGGAGAAGGAAAATCCTTTT
TCGTCTTTCTCTCAAGATCATTG
Run BLAST on NCBI

transcript from alignment at scaffold_356:53613..59073+

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00061338 ID=TCONS_00061338|Name=TCONS_00061338|organism=Clytia hemisphaerica|type=transcript|length=5461bp|location=Sequence derived from alignment at scaffold_356:53613..59073+ (Clytia hemisphaerica)
TGGATCTCCCATGCAGGCACATCTTTCTCTCGAGATCATTGTCAGGGTGT
GTGCCTCTTTTCGATCCCGTTCTTTGCGCCGTTCGATGGTCGAAAACTTA
TTATCGTCAAAGCCAACGGCTGTTTACACAAACAATCAATAAATTTGACA
AGTTAACGACCACTTCGTCTTCATTCCGCCCTCTAAAAGCCCTTAACTTT
AACGAAAGATATAGAAAGGCAGACGctgtatgcaaaaatatttcGATGTT
GGCTTCAGAGCCTGGAGGCACAGAATTTGTCGAGCGAATGACCCTTCTTA
GAACACTTGAAGACATGTGGCGAAATGGTCAAGAGGTTCATTTACTTTCG
CTACCATTGAAATCAACGGAGAACGAAAATCCTTTTTCATCTTTCTCTCA
AGATCATTGTCAGGGTGCGTGCGTGTggtattgttaaccggttacttttt
cgaagcgggctacatgactttttgcgcaatgcaattggttcttttcgcat
gacgacgggcctacattggccagagttgcccgtcgttaggaaaattcatt
gtgacgtcacttcaaaggaaaatgaacaatgcgttgacatcatctctctc
attttttatttctgacgtcagaaattatagcaattttttatctctttccG
CTTGTTTcttctgctttatttcgctatttttcctggataaagcgctcaaa
atcaatcgaagctgaaggaaacggttaacaaatacaataNtcatccgcaa
aattttatCCATTAAAGTAATGATAAAATCCAATATAATAAAATCAAAGC
AAGAGCTATCTctctaaaaattttcactttttctctctattttgaaaatt
ctttcacAAATTTTTCTTTGCCCCCCCCCACatattttatttataatatT
TCCCCCTTTTCATCCCCCCCCCTTAAGCTTCTAAAAGCACTCTCCTCTTG
ACAATTTTCTCCATAAgacccctttataaaggggggtaCGGCACTATGAG
TAATGCTAAtgaattgatattttttatcgatgaaactttgaaaaaaaaaa
ttcatcaaactAATGAAACTAATTTCATCAGAAGATATTATGAGAATAAT
AACCTGCAGTATCTTAAAGACTTAAAGTGCGAAATTTATAGGATCGATAA
TTATATGTAACAAAAGAGACTTTCAGTTCACATCAggcttttcttctttt
ttaattgcaGTCTAGTGACTTTTTAATCATAACGTGCGTTATGCAAATAA
GAGCAGCTTTAAAAAACATTGTAATAAACCAGAACGGCAAAATTGGACAA
ACTGATTTAACTTAAATCTCTAGTTAATTGATGATGAAGNTATGCAAAAA
AGAGCAGCTTTAAAAAACATTGTAATAAACCAGAACGGCAAAATTGGACA
AACTGATTTAACTTAAATCTCTAGTTAATTGATGATGAAGATGTTTAAAA
GACCATcttcttgattttttaaggTTGTTCAGTTAACTTGCACAAAGACA
ACGAAGATAACTTCCTCGGTCTTTTCTTTCAAGACGAGTCAATGAAAGTG
AACTTTGATCGATTTCCTGAAATTTTATTTGTTGATGCCACCTACAAGGT
CAACGAGCTTCGGATCCCAGCCTACATTTTCCTTGTAGAAGACTCACTGG
GACAGAGTGAAGTTGTTGGTGTTGCTCTAATAGTGAACGAAACAAAGGAA
AACCTCGCTTGGCTGATTGGCACCTTTGCCGAGGAAAACCCAACCAAAAA
ACTACGAGTTGTAATGGCCGATAAGGATATCAACGAAAGAAATAGAATCT
CAGAGCTGCTCGGAGTGCCCATTTTAATTTGTCTCTATCATGCATTGAAG
ATTTTCAAACGTGAACTATCCACCCTTTCGCTGACCCCTAACATCAAAGA
TGCAGCGAAAGGTCTCTTCGAAAGTATGTGTTACGCATACACAAAGTCTG
ATTTTGAAAGGTTTGAAAAAGAATTCCAAACGCTAGAATCGTCAGCCCTG
CTTGAATACTACgataaaaattggaaatctattTCTAAAGAATGGGTAAA
ATGTTTTAAGGCAGAAGCTGGAGACTTTCTTAACTCGACAAAAAATCGGC
TTGCAAGTTTCAATAGCAAACTGAAAACTGTTGTTGACAACCATTGTAGT
CTTGAGGAGTTCGTACGTGGGTTTTTCGTTGTACTTGACGCCTTACGCAC
TGAAAGAGACGCAAATGTTGCAAAAGAGTTCCAAAAGCTGAAGCTTTCGC
TGCCTCACGATCCGTGTGTTAAAAGTATTTACGATCATTTAACTTCGTAT
TCTGCTAACTTTGTATGTGAGCAGCTAGCAGCAATCGAAAAAACAACAGT
ACGTAACAGTACAATTAACTCGTGTGACTGTTGTTTTTATCTTTCAATGG
ATCTCCCATGCAGGCACATCTTTCTCTCGAGATCATTGTCAGGGTGTGTG
CCTCTTTTCGATCCCGTTCTTTGCGNATAACAGTACAATTAACTCGTGCG
attgttgtttttatctttCAATGGATCTCCCATGCAGGCACATCTTTCTC
TCGAGATCATTGTCAGGGTGTGTGCCTCTTTTCGATCCCGTTCTTTGCGC
CGTTCGATGGTCGAAAACTTATTATCGTCAAAGCCAACGGCTGTTTACAC
AAACAATCAATAAATTTGACAAGTTAACGACCACTTCGTCTTCATTCCGC
CCTCTAAAAGCCCTTAACTTTAACGAAAGATATAGAAAGGCAGACGCTGT
ATGCAAAAATATTTCGATGTTGGCTTCAGAGCCTGGAGGCACAGAATTTG
TCGAGCGAATGACCCTTCTTAGAACACTTGAAGACATGTGGCGAAATGGT
CAAGAGGTTCATTTACTTTCGCTACCATTGAAATCAACGGAGAACGAAAA
TCCTTTTTCATCTTTCTCTCAAGATCATTGTCAGGGTGCGTGCCTCATTT
TTATTCTGTTCTTTTGCGCCGTTCACTGGTTGAAGACTTATTTCCATCAA
AGTCAACGGCTGTTTACTTTTTCTAAATTTTATGATTTGAAAATATCCCC
AGTGCGATTATCTTTTCTACAAACACACAATCACAGATTTATTTGTGCTT
TAAAAGTTTTACTGACATCTCGTTTGATATGGACTAATTTGATAGAGCTT
AAGATTGTATTGATTACACCATTATGTGTTAAGGGGTAATGTTAATACAT
TTAAAACAAAATTTTCTATGAATGTTTAGGTGACAAAGACAATACCAGTG
ACAAAACTTTGCCTAAAGTCCCGAAGATTCAACCCGGGGTAAGTCATAAT
CTATCGTCAAAATGAATTTTCTTTAAAGGAGTAAACCGATGCAATTTATA
TTGAGAGTTGTTTATTATTAATTGAAGAACATTCTCCAGATACAAAGATG
ATGGTGACAGTAAAGCCAAAGCCTGATGTATCTCTGAATATTATTAAATG
CTGCACGCAGACTGACCCTCGACTTTCTTTTTCAGAACCCAAATGTTACT
GGCGTCATCAACAATTCGCCTTTGAAATCAACGGAGAACGAAAATCCTTT
TTCGTCTATCTCTTCAAATCATTGTCAGGGTGCGTGCCTCTCTTTTTTAT
TCTGTTCTTTGCGCCGTTCGCTGGTCGAAGACTTATTTCTATCAAAGTCC
ACGGCTGTTTACTATTTCTAAATTTTATGATTTGAAAATATCCTCAGTGC
GATTATCTTTTCAACAAACACACAATCACATATTTTAATTCGTACTTTTT
AAAGTTTTACTGACATCTCGTTTGATATGGACTAATTTGATAGAACTTGT
GATTGTATTAATTACACCATTATGTGTTAAGGGGTAAAGTTAATACATTT
AAAACAAAATTTTCTATGAATGTTCAGGTCACATAGACAATACCAGTGAC
AAAGATTCGCCCAAAGTCACAAAGATTCAGCCTGAGGTAAATCATAACCT
ACCGGCATCGGCAAATGAAGTTTCTCTAAAAGAGTCTTTTCATAACCAAA
GCGACAAGCATATCGACATTCAAGATTTTGATGTCAGTAATGTTAAATTA
CCACCAAGGAAAAAGCCGAGAGGAAGACCAAAAGGACACAATTTAACAGT
CATCGGAAGACAGAAGAAACGGAAATTGAATAATGGTATTTTGcatgttg
tttttttcgctAGTTTTTACCActatattactttttctaaattttattgt
tttaaaatatCCTGGTCgcgattatcttttcaacaaacacaCGATCACAA
ATTTAAttcgagttttttgaaattttactgagagctaatttgaaatagac
taaTCTGATGGAACTTAAGGTTGTATTATTACACCATTGTTTTAAGGGGT
AAAGATGAAAcacttttaattctttttttctatGAATGTTCAGGTCGCAA
AGATAATACGAATAACAAAGCTTTGCCCAAAGTCCCGAAGATTCAACCCG
AGGTAAGTCATAATCTATCGacaaaatgaattttctttaaaggAGTAAAC
CGATGCAATTTATATTGAGNAACCCGAGGTAAGTCATAATCTATCGacaa
aatgaattttctttaaaggAGTAAACCGATGCAATTTATATTGAGAGTTG
TTTATGTTAAATTGAAGAACATTCTCCAGATACAAAGCTGATGGTGGCAG
TAAAGCCAAAGCCTGATGTTTCTCTGAATATTATTAAATGCTGCATAAAC
TGACCCTCGACTTTATTTTTCAGAACCCAAATGTTCCTGGCGTCATCAAC
AATTCGCCTTTGAAATCAACGGAGAAGGAAAATCCTTTTTCGTCTTTCTC
TCAAGATCATTGTCAGGGTGCGTGCATGCCTCTTTTTTATTCTGTTCTTT
TGCGCCCTTTACTGGTCGAAGACTTATTTCCATCAAAGTCAACGGCtgtt
tactttttctaaattatatgatttgaaaatatcTCCAGTgcgattatctt
ttcaacaaacacaCAAATAACAGGTTTTAAGTTGTGCTTTTTAAAGTTTA
ACTGGCATCTCTTTTGAAATGGACTAATTTGATAGAGCTTAAGATTGTAT
TAATTACAGCATTATGTGTTAAGGGGTAAAGTTAatacatttaaaacaaa
ttttctatcaatgtTCAGGTCACATAGGCAATACCAGTGACAAAAATTTG
CCCAAAGTCCCGAAGATTCAACCCGAGGTAAGTCATAATCTATAGacaaa
atgaattttctttaaaggAGTAAACCGATGCAATTTATATTGAGAGTTGT
TTATTCTAAATTGAAGAACATTCTCCAGATACAAAGCTGATGGTGACAGT
AAAGCCAAAGCCTGATGTTTCTCTGAATATCATTAAATGCTGCATAAACT
GACCCTCGACTTTATTTTTCAGAACCCAAATGTTACTGGCGTCATCAACA
ATTCGCCTTTGAAATCAACGGAGAAGGAAAATCCTTTTTCGTCTTTCTCT
CAAGATCATTG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_038483XLOC_038483Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00061338-exon-scaffold_356-1491911889:53613..54026TCONS_00061338-exon-scaffold_356-1491911889:53613..54026Clytia hemisphaericaexon
TCONS_00061338-exon-scaffold_356-1510915933:53613..54026TCONS_00061338-exon-scaffold_356-1510915933:53613..54026Clytia hemisphaericaexon
TCONS_00061338-exon-scaffold_356-1575043694:53613..54026TCONS_00061338-exon-scaffold_356-1575043694:53613..54026Clytia hemisphaericaexon
TCONS_00061338-exon-scaffold_356-1491911889:56842..56900TCONS_00061338-exon-scaffold_356-1491911889:56842..56900Clytia hemisphaericaexon
TCONS_00061338-exon-scaffold_356-1510915933:56842..56900TCONS_00061338-exon-scaffold_356-1510915933:56842..56900Clytia hemisphaericaexon
TCONS_00061338-exon-scaffold_356-1575043694:56842..56900TCONS_00061338-exon-scaffold_356-1575043694:56842..56900Clytia hemisphaericaexon
TCONS_00061338-exon-scaffold_356-1491911889:57098..57191TCONS_00061338-exon-scaffold_356-1491911889:57098..57191Clytia hemisphaericaexon
TCONS_00061338-exon-scaffold_356-1510915933:57098..57191TCONS_00061338-exon-scaffold_356-1510915933:57098..57191Clytia hemisphaericaexon
TCONS_00061338-exon-scaffold_356-1575043694:57098..57191TCONS_00061338-exon-scaffold_356-1575043694:57098..57191Clytia hemisphaericaexon
TCONS_00061338-exon-scaffold_356-1491911889:57490..57747TCONS_00061338-exon-scaffold_356-1491911889:57490..57747Clytia hemisphaericaexon
TCONS_00061338-exon-scaffold_356-1510915933:57490..57747TCONS_00061338-exon-scaffold_356-1510915933:57490..57747Clytia hemisphaericaexon
TCONS_00061338-exon-scaffold_356-1575043694:57490..57747TCONS_00061338-exon-scaffold_356-1575043694:57490..57747Clytia hemisphaericaexon
TCONS_00061338-exon-scaffold_356-1491911889:58006..58064TCONS_00061338-exon-scaffold_356-1491911889:58006..58064Clytia hemisphaericaexon
TCONS_00061338-exon-scaffold_356-1510915933:58006..58064TCONS_00061338-exon-scaffold_356-1510915933:58006..58064Clytia hemisphaericaexon
TCONS_00061338-exon-scaffold_356-1575043694:58006..58064TCONS_00061338-exon-scaffold_356-1575043694:58006..58064Clytia hemisphaericaexon
TCONS_00061338-exon-scaffold_356-1491911889:58985..59073TCONS_00061338-exon-scaffold_356-1491911889:58985..59073Clytia hemisphaericaexon
TCONS_00061338-exon-scaffold_356-1510915933:58985..59073TCONS_00061338-exon-scaffold_356-1510915933:58985..59073Clytia hemisphaericaexon
TCONS_00061338-exon-scaffold_356-1575043694:58985..59073TCONS_00061338-exon-scaffold_356-1575043694:58985..59073Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_356supercontigscaffold_356:53613..59073 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0	0	0	0	1.49162	1.34938	3.57345	3.83078	2.17977	1.65238	0.0938103	3.03632	0.712339	1.29615	0	0	0	0	0	0	0	0	0	0	4.56972	4.87274	0	0	0	0
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00061338 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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