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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00061342 ID=TCONS_00061342|Name=TCONS_00061342|organism=Clytia hemisphaerica|type=transcript|length=393bp
GTGGATCGTCAatcttctttttatataaacaAGAGTAATTTTACAAATCa
taatttttccatttcatccaTAAATTGGGCCATCTTTTGGAATCGCTTTG
CATCTGTAATCGAACTTTCTTTCTTGGctgaaaattaggaaaaaacaTCC
TATGACCATGGTTATTCGTATTACATTTGCTGCACGAGCATACGTGTTTC
CCCTCACTCTCACTCCCCAAACACAATACGATGGAACAATAACTATCTTC
CGCACATTTCGGTTGACATTTCCCTGTTAGTCCTGGACCCCAGTAACAAT
TTGCCAAGAAATCAAAAGCCGTTGTTGTAGCGATTAGTGTGGATGCTACG
AAGAATAAGAAAACCAACGATTTCATCTTTATTGATATTTCCT Run BLAST on NCBI transcript from alignment at scaffold_356:146582..149832+ Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00061342 ID=TCONS_00061342|Name=TCONS_00061342|organism=Clytia hemisphaerica|type=transcript|length=3251bp|location=Sequence derived from alignment at scaffold_356:146582..149832+ (Clytia hemisphaerica)
GTGGATCGTCAatcttctttttatataaacaAGAGTAATTTTACAAATCa
taatttttccatttcatccaTAAATTGGGCCATCTTTTGGAATCGCTTTG
CATCTGTAATCGAACTTTCTTTCTTGGctgaaaattaggaaaaaacaATG
TACGTCAAATTCAAATACATCCGTCTTGCAGCTCCCCGAGGGTAAAAATT
TCCATCAAAATAACCCCGCCGGGGGGGGGGGCNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNccccccggggggggggggcagtcag
gaaaattgaccgacgggtatgtgcggcgattAAGAGAGAAAAATTACAAA
CTTTTGcccgaaaatcttgattttttgctcaaatagagtttaaaatttga
aaaaatgcactgtaagggtataaATTTTACCGATTTATTTCTGcattgta
agggtgcgattttaaaagctgattttttcgccgcacataccgtcagttgg
taaacccactgcccccccccgggcgaAATACCAATTGAGAGAAAAATTAT
ATTGCTCCAAGCTccatgaaatcaaagtcaatcttCTAGTGGGGCTGAAA
ATTTAGGGTTTATTCCCACCAGGGACGAAAACTTGAACAAATTTTCCACC
AGTTCTGTGAAACGTGTTCAAATGGAATTTTCTTGGCTTTGGCTGAAGCA
AAGTAAGTCATTTTTGggttcgttggaaagctctttccaAGATTTATCTT
TTCAGAGTGTAATCAAATTTGGCGGCTGCCAAAAGAGTCATTCATAAATG
AAGGAAATTTAGCGCTGCGCAGTACTGAAAGAGTTAAGATAAACGTATCC
AGCTTGCGCAATATACTGCGGTACTTTTCAAATAACTTTCAGAATCAGGA
TCACTTCACACCATTCCCACATAATGGCTAAGTGAGGGGTCTACAAATCT
AATCAGTGGGAATAATTCCACAAAGGGTTCCCTTGGGTTGACCTTATCAT
GACCTCAAATTCATAATTTCCCCCTCGCTTTATAAATCAATACAATTATA
TTCTTAAGgcataaaaaagaagaaaatttccaTTAATTACGGGAATAACT
CAGACTTTatgaagaaatcaaaaaattgcatAATCGACCTCTAGATCTTT
CGAAAGTCTAGAAAAGGCTTAAAAACAGTCTAATATGGTACAAAGTCTAT
TTATTTTATGATAGTTGatgtaaaggcttggggacacgagaagttttttt
tcgcgttggtgaaatgcaacatgctccatcccaacaacacaagaaaaaag
tgcgtgtctcatggtttctttttttgtttcgtgggacaaaaagtgaaggA
AATACCCAAACAGACTCCAACagacccaaaagacacgctgattttgtccc
tgggacaaaagtgagtgaaggacaaatgttattaaaagaaaaatgatgtg
gagacacgagaaagcgtttcagattagtgggatggagcatgttgcattgc
accaatgcaaaaaaattttctcgtgtccccaagccttaagtattgtacat
gtttttttttNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNagcatataataagcataaactatgcctgg
atgctttgagaacttaagcatacacgagcctgatcaaggggcatacactt
gcttataaaaaaaaacatgtatggggttttgttattttgaaaccGTGATA
TCTTATGTAGGTTTACGCCATTTACGCCAGGATTATATTTTGTAAGTTTC
Gcaagtttttcagaaaattcgcaaaatgtaatgctcgcgaaaattttaaa
accgaAAGATTTTCGACCGATTTTAAAGGTTAAATGCGTTTTTCgtagaa
gaaaaatttaaaattcgcCGCTTTAGGtgaattcacggtgaaaagctgca
aCCGAAAAAGTTCTCAGATTCTCACCGTGAGTGGAGATTTTCATCTCAAA
AAAGTTGagttttcttttaatatttAGAGGTAAGTTTCTCAACAGAAGAC
GGCACCGGGCTGAACCAGAGGGGAGAGCAACTTTTGAATTTAAAAGTAAA
CTTACTCCTATGACCATGGTTATTCGTATTACATTTGCTGCACGAGCATA
CGTGTTTCCCCTCACTCTCACTCCCCAAACACAATACGATGGAACAATAA
CTATCTTCCGCACATTTCGGTTGACATTTCCCTGTTAGTCCTGGACCCCA
GTAACAATTTGCCAAGAAATCAAAAGCCGTTGTTGTAGCGATTAGTGTGG
ATGCTACGAAGAATAAGAAAACCAACGATTTCATCTTTATTGATATTTCC
T
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00061342-exon-scaffold_356-1491911889:146582..146728 | TCONS_00061342-exon-scaffold_356-1491911889:146582..146728 | Clytia hemisphaerica | exon |
| TCONS_00061342-exon-scaffold_356-1510915933:146582..146728 | TCONS_00061342-exon-scaffold_356-1510915933:146582..146728 | Clytia hemisphaerica | exon |
| TCONS_00061342-exon-scaffold_356-1575043694:146582..146728 | TCONS_00061342-exon-scaffold_356-1575043694:146582..146728 | Clytia hemisphaerica | exon |
| TCONS_00061342-exon-scaffold_356-1491911889:149587..149832 | TCONS_00061342-exon-scaffold_356-1491911889:149587..149832 | Clytia hemisphaerica | exon |
| TCONS_00061342-exon-scaffold_356-1510915933:149587..149832 | TCONS_00061342-exon-scaffold_356-1510915933:149587..149832 | Clytia hemisphaerica | exon |
| TCONS_00061342-exon-scaffold_356-1575043694:149587..149832 | TCONS_00061342-exon-scaffold_356-1575043694:149587..149832 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_356 | supercontig | scaffold_356:146582..149832 + |
Blast
The following BLAST results are available for this feature:
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