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Overview
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00061371 ID=TCONS_00061371|Name=TCONS_00061371|organism=Clytia hemisphaerica|type=transcript|length=5198bpRun BLAST on NCBI protein sequence of TCONS_00061371-protein >TCONS_00061371-protein ID=TCONS_00061371-protein|Name=TCONS_00061371-protein|organism=Clytia hemisphaerica|type=polypeptide|length=552bp MVDEELGNACEYIPGRFYFASLRSKPKSNASTHYFCIDDDLVYENFYADFRun BLAST on NCBI transcript from alignment at scaffold_358:72071..89062+ Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.>TCONS_00061371 ID=TCONS_00061371|Name=TCONS_00061371|organism=Clytia hemisphaerica|type=transcript|length=16992bp|location=Sequence derived from alignment at scaffold_358:72071..89062+ (Clytia hemisphaerica) Coding sequence (CDS) from alignment at scaffold_358:72071..89062+ >TCONS_00061371 ID=TCONS_00061371|Name=TCONS_00061371|organism=Clytia hemisphaerica|type=CDS|length=28203bp|location=Sequence derived from alignment at scaffold_358:72071..89062+ (Clytia hemisphaerica) Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Position
The following features are aligned
Expression
Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Values :
GrOo_1 GrOo_2 FGOo_1 FGOo_2 EG_1 EG_2 P1_1 P1_2 P2_1 P2_2 P3_1 P3_2 PoPr_1 PoPr_2 St_1 St_2 GO_1 GO_2 PH_1 PH_2 BMF_1 BMF_2 MMF_1 MMF_2 M_1 M_2 GEC_1 GEC_2 GEN_1 GEN_2
Annotated Terms
The following terms have been associated with this transcript:
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Blast
BLAST of TCONS_00061371 vs. Swiss-Prot (Human)
Match: CC14A (Dual specificity protein phosphatase CDC14A OS=Homo sapiens GN=CDC14A PE=1 SV=1) HSP 1 Score: 565.459 bits (1456), Expect = 0.000e+0 Identity = 248/363 (68.32%), Postives = 308/363 (84.85%), Query Frame = 1
Query: 169 ELGNACEYIPGRFYFASLRSKPKSNASTHYFCIDDDLVYENFYADFGPLNLSMLYRYCQKVNRKLKTPSLARKKIIHYTSFDSRKRANAACLIGCYSVIYLNKSPDEAYSPLISGCNPPYLPFRDASYGGCTYNLTILDILNGLHKAMKLNFFDFETFDPEEYEHYERVENGDFNWIIPGKFLAFAGPHDRSGIENGYPLHSPESYFEYFKKHNISTVIRLNKKLYDAKRFKNGGFGHYDLFFTDGSIPNDSIIKRFLTITENISGAAAVHCKAGLGRTGSLIACFMMKHYRFTAAECIAWIRLCRPGSIIGPQQHFLEEKQTTMWIEGDIYKSRANKHSFESSHPTKSSVDNILNGVDAISL 1257
EL ACE++ R YFA+LR++PKS +THYF ID++LVYENFYADFGPLNL+M+YRYC K+N+KLK+ SL+RKKI+HYT FD RKRANAA LIG Y+VIYL K+P+EAY L+SG NPPYLPFRDAS+G CTYNLTILD L G+ K ++ FFDFETFD +EYEHYERVENGDFNWI+PGKFLAF+GPH +S IENGYPLH+PE+YF YFKKHN++ V+RLNKK+Y+AKRF + GF HYDLFF DGS P+D+I++RFL I EN GA AVHCKAGLGRTG+LIAC++MKHYRFT AE IAWIR+CRPGSIIGPQQHFLEEKQ ++W++GDI++S+ ++ ++ S++ IL+G+D +S+
Sbjct: 7 ELIGACEFMKDRLYFATLRNRPKSTVNTHYFSIDEELVYENFYADFGPLNLAMVYRYCCKLNKKLKSYSLSRKKIVHYTCFDQRKRANAAFLIGAYAVIYLKKTPEEAYRALLSGSNPPYLPFRDASFGNCTYNLTILDCLQGIRKGLQHGFFDFETFDVDEYEHYERVENGDFNWIVPGKFLAFSGPHPKSKIENGYPLHAPEAYFPYFKKHNVTAVVRLNKKIYEAKRFTDAGFEHYDLFFIDGSTPSDNIVRRFLNICENTEGAIAVHCKAGLGRTGTLIACYVMKHYRFTHAEIIAWIRICRPGSIIGPQQHFLEEKQASLWVQGDIFRSK-----LKNRPSSEGSINKILSGLDDMSI 364 The following BLAST results are available for this feature:
BLAST of TCONS_00061371 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens)) Total hits: 1
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