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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00061394 ID=TCONS_00061394|Name=TCONS_00061394|organism=Clytia hemisphaerica|type=transcript|length=1761bp
ttttgaataaaaataaattcttttgttgttCTTTCCCTTCTAAACCAAAG
TTATTTACATTCTTCTATCAAAAAATTCATGTAATAAAGAAAAGTATCTA
ATCGAACAATGAACACAATATTGATACTTGAATTCTCACTATAAAAGAGA
GGTTGTCTTTCGACAACGCCTTCCTTCCCGCCTAAAATTGCGGAAACTAA
CTTTTTCTATACATGTAACAATTTTCAATAACCTTAACTCTGTAGTTACc
tttcaaaaaattgcattttaaacCATAATAATCGGGTCGGAGATTATTGT
CAAGTGACATCGCTTACTTCTAAATACAACAAAACGGAGGTATTATGCTA
TCCGAATATTACTCCATAAAAAAGCTCCAGGCTTTCAGGTCTCCTTTCTT
ATATAGGAGTTTTACACTAAAAACGAAGAAAGATATGACGTATACTTAAC
ACAGTCTAATACAATTCTATGATATAGataattaagaaaaaaatcagcTC
TTACTCCTAAATTGATCAAAGTCCAACCTCGTTCCATCCCTGTGCATTAT
CagttttttatgcttactgatagcgctagataatatttTCTGTCGTCtat
atcagtaacgtaaataaagcctgggatacacaggGATGAGGTTGATCGAA
GTCTACAAAAAACAGAGGTTATCTAGTTTAGTTTTGATCTCCTTTTGGAA
ATTACATTTAaatctttacagaaaaatttgTTATTAACCAAAATCACATC
TAACATAATAATATATTCCTCCTTAAAAATCatatctaaaaagctttaac
TCACAACATGATCAGAATTTTCAACAGGTAAACGCTGTTGTTGATGCACT
TCCTCTGATCGACCTTCAATCTGACCTGCATTCAGAGCTCTATCATTAAC
AACACTCGTCGCGTTCGCACCGAGTAGTTCTTCTTCAAAATTCTCAACGT
TGGCATTATCAACCATTTCAAACTGCTCGTTTCGACTTTCCGATTGTGAA
CTAATAGTCTGATTCGGGGCATTAATGCCTCTACCATCTCCGACAACCGC
GTTATTTGACGCAGACGGATCAACTTCTTCAGGTAAGCTTGTCGCATTGG
CTGACATCATCTCCTCTGTCGATGATGgtaaagaatgaaaattttcgacA
TCTACCACGCCACTCGATCCGGAAAGAAGCATAACATCAGGTAAGGTCTC
ATTCCCTGGTTCTTCTTGAATAGGAGATGACGGTGAATTATTTGCTCTAT
TTCGTCCACCAAATTCTTCCACAGGTTGTGCTATAACAATGTTCTGCCCG
GGTTGGGCGTTTTGGTCACGTGATAAATTTAGGGCGTTATCAAGAGCTAA
GACAGGGGCGTTTACACCTTCTCCGCTTTGATTTATGACAGGTCTAATGA
AATTCTGTGCTGGAAGAACCAGGTTTGGAATGACACCGACTTCTTCTACA
CCTTGAACGCCCTGGGCGGCTGGAGCAGGTGGTGGTGGAAGAGCAGGGCG
TCTATCAAGTTCTAATCGTAACCTATCATTATCATGCCGAAGTTGtctgt
tttcattttcaagagCAAGAGTATTGTCATTTTTACGTGGACGAAAACCA
AGTCGTATAAGTGGCGTCCAGATCTCCAAACCTGCATGTGTGAGAATGAC
AAGAGATGTCAGCAATACCAACGTTATGAAGACAAATGGTTGCCATTGTA
TTGGAATCTCTTTGAACAAGAGACGAAAACTTTCTCCAAATGCTGATGCA
CATAATTTCAA Run BLAST on NCBI transcript from alignment at scaffold_358:407669..409799+ Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00061394 ID=TCONS_00061394|Name=TCONS_00061394|organism=Clytia hemisphaerica|type=transcript|length=2131bp|location=Sequence derived from alignment at scaffold_358:407669..409799+ (Clytia hemisphaerica)
ttttgaataaaaataaattcttttgttgttCTTTCCCTTCTAAACCAAAG
TTATTTACATTCTTCTATCAAAAAATTCATGTAATAAAGAAAAGTATCTA
ATCGAACAATGAACACAATATTGATACTTGAATTCTCACTATAAAAGAGA
GGTTGTCTTTCGACAACGCCTTCCTTCCCGCCTAAAATTGCGGAAACTAA
CTTTTTCTATACATGTAACAATTTTCAATAACCTTAACTCTGTAGTTACc
tttcaaaaaattgcattttaaacCATAATAATCGGGTCGGAGATTATTGT
CAAGTGACATCGCTTACTTCTAAATACAACAAAACGGAGGTATTATGCTA
TCCGAATATTACTCCATAAAAAAGCTCCAGGCTTTCAGGTCTCCTTTCTT
ATATAGGAGTTTTACACTAAAAACGAAGAAAGATATGACGTATACTTAAC
ACAGTCTAATACAATTCTATGATATAGataattaagaaaaaaatcagcTC
TTACTCCTAAATTGATCAAAGTCCAACCTCGTTCCATCCCTGTGCATTAT
CagttttttatgcttactgatagcgctagataatatttTCTGTCGTCtat
atcagtaacgtaaataaagcctgggatacacaggGATGAGGTTGATCGAA
GTCTACAAAAAACAGAGGTTATCTAGTTTAGTTTTGATCTCCTTTTGGAA
ATTACATTTAaatctttacagaaaaatttgTTATTAACCAAAATCACATC
TAACATAATAATATATTCCTCCTTAAAAATCatatctaaaaagctttaac
TCACAACATGATCAGAATTTTCAACAGGTAAACGCTGTTGTTGGTGCACT
TCCTCCGATTGTCCTTCAATCTGACCTGCATTCAGAACTCTATCATTAAC
AACACTCGTCGCGTTCGCATCAAGTAGTTCTTCTTCAAAATTCTCTACGT
TGGCATTATCAACAATTTCAAACTGCTCGTCTCGACTTTCCGATTGTGAA
CTAATAGTCTGATTCGGGGCATTAATTCCTCTACCATCTCCGACAACCGC
GTTGTTTGACGCAGACAGATTAATAACTTCAGGTAAGCTTGTTGCATTGG
CTGACGTTATCTCCTCTGTGGATGACGGTAAAGATTGATGGTCGACATCA
ACCAGCACGTCGCTCGATCCGGAATGAAGCATAATAANTTTCAACAGGTA
AACGCTGTTGTTGATGCACTTCCTCTGATCGACCTTCAATCTGACCTGCA
TTCAGAGCTCTATCATTAACAACACTCGTCGCGTTCGCACCGAGTAGTTC
TTCTTCAAAATTCTCAACGTTGGCATTATCAACCATTTCAAACTGCTCGT
TTCGACTTTCCGATTGTGAACTAATAGTCTGATTCGGGGCATTAATGCCT
CTACCATCTCCGACAACCGCGTTATTTGACGCAGACGGATCAACTTCTTC
AGGTAAGCTTGTCGCATTGGCTGACATCATCTCCTCTGTCGATGATGgta
aagaatgaaaattttcgacATCTACCACGCCACTCGATCCGGAAAGAAGC
ATAACATCAGGTAAGGTCTCATTCCCTGGTTCTTCTTGAATAGGAGATGA
CGGTGAATTATTTGCTCTATTTCGTCCACCAAATTCTTCCACAGGTTGTG
CTATAACAATGTTCTGCCCGGGTTGGGCGTTTTGGTCACGTGATAAATTT
AGGGCGTTATCAAGAGCTAAGACAGGGGCGTTTACACCTTCTCCGCTTTG
ATTTATGACAGGTCTAATGAAATTCTGTGCTGGAAGAACCAGGTTTGGAA
TGACACCGACTTCTTCTACACCTTGAACGCCCTGGGCGGCTGGAGCAGGT
GGTGGTGGAAGAGCAGGGCGTCTATCAAGTTCTAATCGTAACCTATCATT
ATCATGCCGAAGTTGtctgttttcattttcaagagCAAGAGTATTGTCAT
TTTTACGTGGACGAAAACCAAGTCGTATAAGTGGCGTCCAGATCTCCAAA
CCTGCATGTGTGAGAATGACAAGAGATGTCAGCAATACCAACGTTATGAA
GACAAATGGTTGCCATTGTATTGGAATCTCTTTGAACAAGAGACGAAAAC
TTTCTCCAAATGCTGATGCACATAATTTCAA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00061394-exon-scaffold_358-1491911889:407669..408495 | TCONS_00061394-exon-scaffold_358-1491911889:407669..408495 | Clytia hemisphaerica | exon |
| TCONS_00061394-exon-scaffold_358-1510915933:407669..408495 | TCONS_00061394-exon-scaffold_358-1510915933:407669..408495 | Clytia hemisphaerica | exon |
| TCONS_00061394-exon-scaffold_358-1575043694:407669..408495 | TCONS_00061394-exon-scaffold_358-1575043694:407669..408495 | Clytia hemisphaerica | exon |
| TCONS_00061394-exon-scaffold_358-1491911889:408866..409799 | TCONS_00061394-exon-scaffold_358-1491911889:408866..409799 | Clytia hemisphaerica | exon |
| TCONS_00061394-exon-scaffold_358-1510915933:408866..409799 | TCONS_00061394-exon-scaffold_358-1510915933:408866..409799 | Clytia hemisphaerica | exon |
| TCONS_00061394-exon-scaffold_358-1575043694:408866..409799 | TCONS_00061394-exon-scaffold_358-1575043694:408866..409799 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_358 | supercontig | scaffold_358:407669..409799 + |
Blast
The following BLAST results are available for this feature:
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