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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00061399 ID=TCONS_00061399|Name=TCONS_00061399|organism=Clytia hemisphaerica|type=transcript|length=2011bp
ACAAGAAGGATCTGCCCAAGCGGAACAAAGCCACAACAGAGAGTCAACCA
GATGATTTCCAACCAGATGAATTCCAACCAATTGAAGTTTACAAGCAAAC
ATGGAAAGGAGATTGTCCATACCCAAAATATGTTGAAATGGAGAAGCTAG
AGAGACAGAAATGGTTTCCACGATATTTGCACCATCTGCAGAAAgtcaat
ttgaagaaaattgataaatatTATTGGAACGATAAGTGTGTCAGATGGTG
GCACCCAAACCCGAAAAATACCTGGTCCTTTTATCCACATCGTAAAAAAA
CGTGGAAGCCCGCCGTACAACCAGACCCAAGTTTTATCCGTCCAAATTGT
ACTTTTGGACAAGAGCTGAAACCACCGACAACCTGTTCAAAAATGCGCCA
ACGATTATGGGACGAGTTGGATAAAATGGGAGCTGTTTATTTCCCGAGAA
GTGGAACAGAGTTGGGTGTTTTAAGAGGAAGTTCTTATTTAACTTCAGAT
GGCGATATAGACATACACGTAGACGTCCCTCAGGACATATTATTCAAAAG
ATTGCGCAAGGTTTTAAAAGGGATTGCAATGGATCCGGGCGGCAGACCTT
CGGCCGAAGTAAGTTGGATACAAAGCGGATGTCCACATAATAAAATGGTT
TTTAACGATTTCATGGTTGATGAAATGATGGAGGAAGGGGGTACAAGACC
TACCCTAAAATCTGTATGTACGTGTTATatgaattctgaaaaattatCAT
GTCATAAAGATGCTAAGAGCCGAATGTATGGTCAGTACGGACCTTCCTGG
TTTGTACCACTTCACGTCAAATACTTAGATGCTCCACACGGTGcacatgt
aaacaaaaaatgtagAGAAAAACTGCAAAGCCTGTTGTCACCTGATGGAT
TTATCAACGAAAAGGCCGTCAGAGATCTGGATCCTAGTATTGTGTATGGC
GAAGATGAAATGCAGATGATTTTAGCGCAATTAAATATACTTCATTACAC
GATCAAGACAACACTAGAGCATAAACGCACAAAATATAAGAAAGGGTATT
TCTTTTTTAACGCCAAAGAAAATTAATTAGACGTTGTACGGCTCTTTTAC
AAATTTCTAGATACAGTGGACTGTCGCAAATTCAAACTTACACTATTCga
gttttaaatatttccctcttataggggaatatttgttaaaGCGGCTTTTT
CAGGATAGATGCAAATTCAGAAGCGGTCGCGTAGTCGATCGCGCGATCTG
AAAGCGTGCTTTGATGGAGAGCTATAGAgatggactcactcacaaagata
aaaagcagCGCTTTCTTAAATAATTCAAATACGTAAGTGAAAGGTGAATA
TAACTAAGCGTTTGTAAACATTCGGCGTGAGAGCTTTTAATGGCTTCCAA
TTTTAGAAGGATTATGGCTTTTGATGTGAAACTCCACTTGCTGCTATCTT
tattttatcttgttttttgGTGCTTTGTTGagtatttaaaaaggtttatt
tgTTTACTACTTAGTATTTTATGTTCGTGTAGTTTTATGAATGCaccaat
gggctcttccagaaaaaatccgttcatggggggtggaggatgtattattt
ttttcatgaattacccctggacattttgattttcaacccaCTGggcacgg
gttatacccctggacaaacatcaaatcaaccccgtggacacaaaaaatta
ccccttgacattggaatttaccccctggacattggaattttttggcattt
tttcaatacccctggaaaattcatcctccaccccccatgaacggactttt
tctggaagagcccgaTACATTGTTAGTGCTCTGTAGTATATACAATTAAA
GTGTCGACTTTTTTCTTCAACACCGCACACACCACAACAACAGCAACACA
ACCCTTAACTACACAGGTCAGGTATGATTTTTTCTCCCTTTGTAAATAAG
TAGTCATAAGTCTTGATATTAAGATGATTTGTgccaaacagtcagtttta
ccAAGCATTTT Run BLAST on NCBI transcript from alignment at scaffold_358:581380..584953+ Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00061399 ID=TCONS_00061399|Name=TCONS_00061399|organism=Clytia hemisphaerica|type=transcript|length=3574bp|location=Sequence derived from alignment at scaffold_358:581380..584953+ (Clytia hemisphaerica)
ACAAGAAGGATCTGCCCAAGCGGAACAAAGCCACAACAGAGTGAGTAACT
TTTTgtctaacctgataacagatagttagaattttcttacgtgcacagTA
TACTTCTAAACGCGCTTGAAAATtaactactttaatcgtagaaattttag
cgggactaattttagcgttttagcgagttttccctattttcactaaaata
aatctcgctaaacaCGCCGAAtcaacagatcgctaaaatttatccgcgcg
aaatttctggttatactgccttgatacatttttatcaataggaagggttt
cagtgcaaagaaatgctagaaaacgaattcagtcaataatgtaatacgag
tattcgctaaaataaatccaaaaaaaatcaagattttcctgactcgctaa
tatacgctaaaattcgtctcgctaaaatttctacgattaaagtattaaGA
ATCTTGTTTCACGCCGAGAtgtcaaaagttgaattttttctaaTATATCG
CTTTATATTCCAacgcaatacaccttttcgacagtagtcgcgcgggcatt
ttttgtccgctttatcccactaaaactgtCCCAATCATTTTTTaacgcat
ttttctattgtctataggtgcgaaacaAGGACtgagacggttttagtggg
ataaagtggACAAAATATGCCCGCAcgactacggttgaaaaggtgtatct
AGGTAGCGATGACTTTGTTGTCTTTCCCAGTCTTTTTTAGTGTTGCGCGG
TCCTTACGAAATCGATGTTATTCATTAGTTTGATTAGTTTTTCGTCGGGC
TTGACTGAccctaaaatctcaaaaatcaaaataaaaataaaattgatttc
attttgTTCTTGTCTTTAGGGCAGAGTTGAAGTATTCTAGACTTTACCCC
GATTCTTAATACTTTGGacccactgttcttaaattgttcttatatgaaat
attcttataagaaatacTGTATGCGACACTATTCCCATTGATGTTGTAAA
GTTATTTTGGCCCACCTAAAATTTAAGcactttatttttaataaattctA
TATGTAGAGTGTATGCGACACACTTTTTCATTAACTTTGCTAAATTTTAA
CACAAGCATACATAAGCTATTTTTGCCCACCAAAAtgttagtttaaaaaa
aaatctctcggcaaaataattttcttttttaagtgtCATGTATTTTACAT
aaccttttcaaatttttataagGAGTCAACCAGATGATTTCCAACCAGAT
GAATTCCAACCAATTGAAGTTTACAAGCAAACATGGAAAGGAGATTGTCC
ATACCCAAAATATGTTGAAATGGAGAAGCTAGAGAGACAGAAATGGTTTC
CACGATATTTGCACCATCTGCAGAAAgtcaatttgaagaaaattgataaa
tatTATTGGAACGATAAGTGTGTCAGGTATAAAATAATgcagtctcttta
actcgaatgtctccttaagttttgaagaaaattgataaatatTATTGGAA
CGATAAATGTGTCAGGTATAAAATAATgcagtctctttaactcgaatgtc
ttcttaaAAGTTGAATCAGTTTTTTCCTATCTAGAGTTAACAATGTCATA
TAAACCTTACTCCgcaactcaaaatttccttaactccttaactcaaaaca
aatttgtgttccccgtgcatgttatgagttatggagacttaaTTTTCTAG
TCTATGCAATCTAAATTTGCCAGGAATGCCTTCGTTTTATAGGtgttaaa
tttttaagtttcAAAAAGGTGTctgaaaattatttattttcatttttaat
atcATAGATGGTGGCACCCAAACCCGAAAAATACCTGGTCCTTTTATCCA
CATCGTAAAAAAACGTGGAAGCCCGCCGTACAACCAGACCCAAGTTTTAT
CCGTCCAAATTGTACTTTTGGACAAGAGCTGAAACCACCGACAACCTGTT
CAAAAATGCGCCAACGATTATGGGACGAGTTGGATAAAATGGGAGCTGTT
TATTTCCCGAGAAGTGGAACAGAGTTGGGTGTTTTAAGAGGAAGTTCTTA
TTTAACTTCAGATGGCGATATAGACATACACGTAGACGTCCCTCAGGACA
TATTATTCAAAAGATTGCGCAAGGTTTTAAAAGGGATTGCAATGGATCCG
GGCGGCAGACCTTCGGCCGAAGTAAGTTGGATACAAAGCGGATGTCCACA
TAATAAAATGGTTTTTAACGATTTCATGGTTGATGAAATGATGGAGGAAG
GGGGTACAAGACCTACCCTAAAATCTGTATGTACGTGTTATatgaattct
gaaaaattatCATGTCATAAAGATGCTAAGAGCCGAATGTATGGTCAGTA
CGGACCTTCCTGGTTTGTACCACTTCACGTCAAATACTTAGATGCTCCAC
ACGGTGcacatgtaaacaaaaaatgtagAGAAAAACTGCAAAGCCTGTTG
TCACCTGATGGATTTATCAACGAAAAGGCCGTCAGAGATCTGGATCCTAG
TATTGTGTATGGCGAAGATGAAATGCAGATGATTTTAGCGCAATTAAATA
TACTTCATTACACGATCAAGACAACACTAGAGCATAAACGCACAAAATAT
AAGAAAGGGTATTTCTTTTTTAACGCCAAAGAAAATTAATTAGACGTTGT
ACGGCTCTTTTACAAATTTCTAGATACAGTGGACTGTCGCAAATTCAAAC
TTACACTATTCgagttttaaatatttccctcttataggggaatatttgtt
aaaGCGGCTTTTTCAGGATAGATGCAAATTCAGAAGCGGTCGCGTAGTCG
ATCGCGCGATCTGAAAGCGTGCTTTGATGGAGAGCTATAGAgatggactc
actcacaaagataaaaagcagCGCTTTCTTAAATAATTCAAATACGTAAG
TGAAAGGTGAATATAACTAAGCGTTTGTAAACATTCGGCGTGAGAGCTTT
TAATGGCTTCCAATTTTAGAAGGATTATGGCTTTTGATGTGAAACTCCAC
TTGCTGCTATCTTtattttatcttgttttttgGTGCTTTGTTGagtattt
aaaaaggtttatttgTTTACTACTTAGTATTTTATGTTCGTGTAGTTTTA
TGAATGCaccaatgggctcttccagaaaaaatccgttcatggggggtgga
ggatgtattatttttttcatgaattacccctggacattttgattttcaac
ccaCTGggcacgggttatacccctggacaaacatcaaatcaaccccgtgg
acacaaaaaattaccccttgacattggaatttaccccctggacattggaa
ttttttggcattttttcaatacccctggaaaattcatcctccacccccca
tgaacggactttttctggaagagcccgaTACATTGTTAGTGCTCTGTAGT
ATATACAATTAAAGTGTCGACTTTTTTCTTCAACACCGCACACACCACAA
CAACAGCAACACAACCCTTAACTACACAGGTCAGGTATGATTTTTTCTCC
CTTTGTAAATAAGTAGTCATAAGTCTTGATATTAAGATGATTTGTgccaa
acagtcagttttaccAAGCATTTT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00061399-exon-scaffold_358-1491911889:581380..581419 | TCONS_00061399-exon-scaffold_358-1491911889:581380..581419 | Clytia hemisphaerica | exon |
| TCONS_00061399-exon-scaffold_358-1510915933:581380..581419 | TCONS_00061399-exon-scaffold_358-1510915933:581380..581419 | Clytia hemisphaerica | exon |
| TCONS_00061399-exon-scaffold_358-1575043694:581380..581419 | TCONS_00061399-exon-scaffold_358-1575043694:581380..581419 | Clytia hemisphaerica | exon |
| TCONS_00061399-exon-scaffold_358-1491911889:582602..582805 | TCONS_00061399-exon-scaffold_358-1491911889:582602..582805 | Clytia hemisphaerica | exon |
| TCONS_00061399-exon-scaffold_358-1510915933:582602..582805 | TCONS_00061399-exon-scaffold_358-1510915933:582602..582805 | Clytia hemisphaerica | exon |
| TCONS_00061399-exon-scaffold_358-1575043694:582602..582805 | TCONS_00061399-exon-scaffold_358-1575043694:582602..582805 | Clytia hemisphaerica | exon |
| TCONS_00061399-exon-scaffold_358-1491911889:583187..584953 | TCONS_00061399-exon-scaffold_358-1491911889:583187..584953 | Clytia hemisphaerica | exon |
| TCONS_00061399-exon-scaffold_358-1510915933:583187..584953 | TCONS_00061399-exon-scaffold_358-1510915933:583187..584953 | Clytia hemisphaerica | exon |
| TCONS_00061399-exon-scaffold_358-1575043694:583187..584953 | TCONS_00061399-exon-scaffold_358-1575043694:583187..584953 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_358 | supercontig | scaffold_358:581380..584953 + |
Blast
The following BLAST results are available for this feature:
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