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Overview
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00061402 ID=TCONS_00061402|Name=TCONS_00061402|organism=Clytia hemisphaerica|type=transcript|length=6243bpRun BLAST on NCBI protein sequence of TCONS_00061402-protein >TCONS_00061402-protein ID=TCONS_00061402-protein|Name=TCONS_00061402-protein|organism=Clytia hemisphaerica|type=polypeptide|length=961bp MAGIPPSQKIAQQHVPIYENYFRQVNASGSGKIPGIDAANFLKKSGLPEGRun BLAST on NCBI transcript from alignment at scaffold_358:604645..636634+ Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.>TCONS_00061402 ID=TCONS_00061402|Name=TCONS_00061402|organism=Clytia hemisphaerica|type=transcript|length=31990bp|location=Sequence derived from alignment at scaffold_358:604645..636634+ (Clytia hemisphaerica) Coding sequence (CDS) from alignment at scaffold_358:604645..636634+ >TCONS_00061402 ID=TCONS_00061402|Name=TCONS_00061402|organism=Clytia hemisphaerica|type=CDS|length=69264bp|location=Sequence derived from alignment at scaffold_358:604645..636634+ (Clytia hemisphaerica) Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Position
The following features are aligned
Expression
Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Values :
GrOo_1 GrOo_2 FGOo_1 FGOo_2 EG_1 EG_2 P1_1 P1_2 P2_1 P2_2 P3_1 P3_2 PoPr_1 PoPr_2 St_1 St_2 GO_1 GO_2 PH_1 PH_2 BMF_1 BMF_2 MMF_1 MMF_2 M_1 M_2 GEC_1 GEC_2 GEN_1 GEN_2
Annotated Terms
The following terms have been associated with this transcript:
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Blast
BLAST of TCONS_00061402 vs. Swiss-Prot (Human)
Match: EP15R (Epidermal growth factor receptor substrate 15-like 1 OS=Homo sapiens GN=EPS15L1 PE=1 SV=1) HSP 1 Score: 478.404 bits (1230), Expect = 6.804e-146 Identity = 337/877 (38.43%), Postives = 468/877 (53.36%), Query Frame = 3
Query: 1191 IPPSQKIAQQHVPIYENYFRQVNASGSGKIPGIDAANFLKKSGLPEGTLHSIWEQADAGSKGFLDKQGFYVALKLISLAQSNQECHVKNLGLPAPPPNMGDSPKAPAATFGDKSSTWSISPKDKKQYDGIFDGLKPINGLLSGDKVKPVLLNSKLPVDILGLIWKLADIDEDGSLDRDEFSIAMFLVYRALASEAMPATLPFQLIPPSKKNK----GGLLIXXXXXXXXXXXQNESVFPSISA--------PQRN--------NWVVQPNEKAQFDVMFKKADTDNDGLVSGGEIKDILVASGLAQNFLAHIWNLCDINNTGQLNADQFSLAMYLINMK-RMGNELPATLTPEMIPPSSRPQTNDDLSSVKFESTGM-DFSAIKELDKITTEIEALGKEKSQLQREITETEEAIRNRRSEIENLQTELDQANKGLGILGNKKTESQKSLDSLHTEAEKFATLLKEIQMKCEDERQLVXXXXXXXXXXXXXXXXXXXXXAKARKELDSLKREESDLEAKIEKNRSHLEGMKAKTLTAKSEISQVQGRLEKLSE---ENSRIKDEINQITTADNGLPTLGDASSFDANRFKDVDQISQISARATAXXXXXXXXXXXXXXXXXDDDENDPFKSKSDPFSTNTET---DPFNSDDPFKSDPFKSVS-----------FAE------DPFAGDPFQTSNNVSGD-----------NDPFTADPFKSSSS--------DKGSDTPASTGAGGGADPFGALDPFGGGAFSTSSTTKIDF----------PSTQSLGSKSDSSDPFGSTSNVFG----------------------------------PTSPTGDDSTIKTSSDPFAS-----DPFAAKDPFASS 3482
IP SQ+I + +YE+Y++QV+ + +G++ +AA FLKKSGL + L IW+ AD KGFLDKQGFYVAL+L++ AQS E + NL L PPP D+ T + W++ ++K ++DGIF+ L PINGLLSGDKVKPVL+NSKLP+D+LG +W L+DID+DG LDRDEF++AM LVYRAL E +P+ LP LIPPSK+ K G + + +P P + ++ S+S+ P+ + NWVV +K +FD +F K D D DG VSG E+K+I + SGL QN LAHIW L D TG+L+ DQF+LAMY I K G + P L+P+M+PPS R D S S G +F+ +KELD I+ EI L +EK L+++I E EEAIR + SE++ LQ +LD+ L L +K ++Q LD + + K +L +++ KC+DE Q++ LK Q+ SQ+S K QE +L +A+ EL+ L++EE+ LE I+ R LE + + + EI+Q + +L +L E E R ++ +Q+ +G +L D AN + V + S A +DPFK+K+ FS NT+ DPF ++DPFKSDPFK FAE DPF GDPF+ S+ G NDPFT+DPF + S + +S+ + G+DPFG LDPFG G+F+ S+ DF P T SLG S DPF S + P P G D S DPF S DPF+ KDPF S
Sbjct: 6 IPLSQQIPTGNS-LYESYYKQVDPAYTGRVGASEAALFLKKSGLSDIILGKIWDLADPEGKGFLDKQGFYVALRLVACAQSGHEVTLSNLNLSMPPPKFHDTSSPLMVTPPSAEAHWAVRVEEKAKFDGIFESLLPINGLLSGDKVKPVLMNSKLPLDVLGRVWDLSDIDKDGHLDRDEFAVAMHLVYRALEKEPVPSALPPSLIPPSKRKKTVFPGAVPVLPASPPPKDSLRSTPSHGSVSSLNSTGSLSPKHSLKQTQPTVNWVVPVADKMRFDEIFLKTDLDLDGYVSGQEVKEIFMHSGLTQNLLAHIWALADTRQTGKLSKDQFALAMYFIQQKVSKGIDPPQVLSPDMVPPSERGTPGPDSSG----SLGSGEFTGVKELDDISQEIAQLQREKYSLEQDIREKEEAIRQKTSEVQELQNDLDRETSSLQELEAQKQDAQDRLDEMDQQKAKLRDMLSDVRQKCQDETQMISSLKTQIQSQESDLKSQEDDLNRAKSELNRLQQEETQLEQSIQAGRVQLETIIKSLKSTQDEINQARSKLSQLHESRQEAHRSLEQYDQVLDGAHGA-SLTDL----ANLSEGVSLAERGSFGAM----------------------DDPFKNKALLFSNNTQELHPDPFQTEDPFKSDPFKGADPFKGDPFQNDPFAEQQTTSTDPFGGDPFKESDPFRGSATDDFFKKQTKNDPFTSDPFTKNPSLPSKLDPFESSDPFSSSSVSSKGSDPFGTLDPFGSGSFN-SAEGFADFSQMSKPPPSGPFTSSLGGAGFSDDPFKSKQDTPALPPKKPAPPRPKPPSGKSTPVSQLGSADFPEAPDPFQPLGAD-----SGDPFQSKKGFGDPFSGKDPFVPS 844 The following BLAST results are available for this feature:
BLAST of TCONS_00061402 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens)) Total hits: 1
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