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Overview
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00061414 ID=TCONS_00061414|Name=TCONS_00061414|organism=Clytia hemisphaerica|type=transcript|length=2630bpRun BLAST on NCBI protein sequence of TCONS_00061414-protein >TCONS_00061414-protein ID=TCONS_00061414-protein|Name=TCONS_00061414-protein|organism=Clytia hemisphaerica|type=polypeptide|length=382bp MLPLTRTDQYKGDEFKPGVRIWCRKILIWIKSIFEDKTSRNIFCFLVLNLRun BLAST on NCBI transcript from alignment at scaffold_358:714501..724951+ Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.>TCONS_00061414 ID=TCONS_00061414|Name=TCONS_00061414|organism=Clytia hemisphaerica|type=transcript|length=10451bp|location=Sequence derived from alignment at scaffold_358:714501..724951+ (Clytia hemisphaerica) Coding sequence (CDS) from alignment at scaffold_358:714501..724951+ >TCONS_00061414 ID=TCONS_00061414|Name=TCONS_00061414|organism=Clytia hemisphaerica|type=CDS|length=13788bp|location=Sequence derived from alignment at scaffold_358:714501..724951+ (Clytia hemisphaerica) Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Position
The following features are aligned
Expression
Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Values :
GrOo_1 GrOo_2 FGOo_1 FGOo_2 EG_1 EG_2 P1_1 P1_2 P2_1 P2_2 P3_1 P3_2 PoPr_1 PoPr_2 St_1 St_2 GO_1 GO_2 PH_1 PH_2 BMF_1 BMF_2 MMF_1 MMF_2 M_1 M_2 GEC_1 GEC_2 GEN_1 GEN_2
Annotated Terms
The following terms have been associated with this transcript:
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Blast
BLAST of TCONS_00061414 vs. Swiss-Prot (Human)
Match: ZNT7 (Zinc transporter 7 OS=Homo sapiens GN=SLC30A7 PE=2 SV=1) HSP 1 Score: 361.688 bits (927), Expect = 8.406e-116 Identity = 212/380 (55.79%), Postives = 265/380 (69.74%), Query Frame = 1
Query: 70 MLPLTRTDQYKGDEFKPGVRIWCRKILIWIKSIFEDKTSRNIFCFLVLNLVFAFLELFYGMWTNSLGLISDSFHMFFDCTALLTGLIATVISRWGKNERYSYGYVRAEIMAGFMNALFLMFVAFFIFSEAVERAFHPPHVEHERLLLISVLGFLVNLVGIFVXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXETDDFHNDFHNKKKAET-GDXXXXXXXXXXXXEGNIQVSSKQILNGVFLHILADTLGSVGVIVSSLLIKYFGWMMADPXXXXXXXXXXXXXXWPLMMDTLSVLMQRTPKEIEYELPIAYQRVSQMEGVYSVQDPHFWTLCSKNYIGNLRLLISPKADAASILSQTHAIFTQLGVKQLYVQIE 1206
MLPL+ D DE+KP KI W +SI DKTSRN+F FL LNL FAF+EL YG+W+N LGLISDSFHMFFD TA+L GL A+VIS+W N+ +SYGYVRAE++AGF+N LFL+F AFFIFSE VERA PP V HERLLL+S+LGF+VNL+GIFVF HG HG H S + A +HG + H H+ A G G G S+QIL GVFLHILADTLGS+GVI S+++++ FG M+ADPICS++IAILI +S+ PL+ +++ +LMQRTP +E LP YQRV Q++GVYS+Q+ HFWTLCS Y+G L+L+++P ADA ILSQTH IFTQ GV+QLYVQI+
Sbjct: 1 MLPLSIKD----DEYKPPKFNLFGKISGWFRSILSDKTSRNLFFFLCLNLSFAFVELLYGIWSNCLGLISDSFHMFFDSTAILAGLAASVISKWRDNDAFSYGYVRAEVLAGFVNGLFLIFTAFFIFSEGVERALAPPDVHHERLLLVSILGFVVNLIGIFVFKHGGHGHSHGSGHGHSHSLFNGALDQAHGHVDHCHSHEVKHGAAHSHDHAHGHGHFHSHDGPSLKETTG----PSRQILQGVFLHILADTLGSIGVIASAIMMQNFGLMIADPICSILIAILIVVSVIPLLRESVGILMQRTPPLLENSLPQCYQRVQQLQGVYSLQEQHFWTLCSDVYVGTLKLIVAPDADARWILSQTHNIFTQAGVRQLYVQID 372 The following BLAST results are available for this feature:
BLAST of TCONS_00061414 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens)) Total hits: 1
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