TCONS_00061437 (transcript) - C. hemisphaerica

Overview
NameTCONS_00061437
Unique NameTCONS_00061437
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1623

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00061437 ID=TCONS_00061437|Name=TCONS_00061437|organism=Clytia hemisphaerica|type=transcript|length=1623bp
TCACAAAGCAAAGCTAAACTTATCAAAAACTGATGGCTGTTGGTACTCAA
GCTGGTGGTAGTATGATATATACTTTTAGAGGAAAGTGGATTGCTGGTTT
TATTTTGGTTTGTGTTTGTGTTTTGCTATGGGTTCGTCATACTGCTTTAC
AAAAATCACCTGCTGATGTTGTTGATTTTCAAGATCCGAAAACAACACCA
TCTGCTTTTTATGCTAAGATACCTGGTTTCACAAATCAACTTGTTTCTTT
TGACCGGATTAGTTCAACgtgttatcaaaacaaaagaccAGAAAGCATAG
AGGACTTATCCAAATTTGTTGCCCTGTTACATCAAAATAGGCAACATAAA
TTATGTGGTGAGCAGTATAAGCTTTTCAAAGTGATTTATGCAATAAGGAC
GAAACAAACAACAGTTGTTTTGTCTGAAACCTTTTtaccaaaagttcaaa
aatggatGAACGGAAATCAAGAGCTTGTTGAAGCAACCAAGAAACAAACT
ATCATCTTTGTCGACAATAAATGGTCATTAGAAAGTGTTGTTTTCAATCC
AGTCCGTGCCAAAAGACCTGGTGGACAAGGACAAGGTAGTGTTGCAGAAT
ATGTAAACAATCTTATTGATAAAGCTAAAGAAGGATGTGATTTTTGTTCA
TACAAAAAGTATACAGCTGCAGATGATTTTGGCATGTTAGAATCTGAGAG
AACGGTTGCAATATCTAATACGTTCAAGATTGAGAAATACCATGGAATGA
TTGTCTTTAAACAGCACGATCCAGTACATTTTGACCAAGATCAGTTTATA
GATGCTATGGATCTAGCAATGAGATGGTTCAAGACTGCGGCTGGTAGAGC
AACTGATCATAAATATAGGCATATGTATTGGGATTGTTTACCGAAAGCAA
GTGCTAGTCAAGTTCACCCTCACATTCATTTAGCACTTGGGGACCATGCA
TATTATGCAAAATGGAATAGGTTACATAAAGCTGCACTCAAGTTCTCTGA
GAGTGTACAAAATTGGAACTACTGGAATGCAATGCTTCAAGTTCATAATG
CCCTTGGTTTAAGTGCACACTTCAATTCTGCATCCATCATCTCGTACATC
ACACCACAAAAAGATTTAGAAGTTGtcattttggccaaaaaaccATCCCA
AgattttttcagattattttatTTTGCAGTCCGTACATTTATGGAGGACA
TGGGTCAATTTGCAATCAGCGCTGGCTGTGTCTTCCCAAAACTTGATGCT
AGCACAGACAATGGTGCTGAGCTACCAGCAATTTGTCGTTTATTATCCAG
AGGAGCTGCTGACTTACCAAGAAGTGATGTCAGCTCTTTTGATTTATTTG
GTACAGCTAATGTTAATAAGGATCCATTTGTTGTTATTAAGAAAGTCAAG
ACCGCTTTGGAAAGGTTAAAGACTTCTAAGTTCACATATCAACCCAAGGA
TATGGAATAGGTGttttttttatgtaatttttgtATCAGTTTATTGTAGG
TATtagttttgtatatttttggtgGAATAATTACATGATTAAGATCAGTT
CATTCataattgttttttatcttttacatAGTTTATTCATAATGTTATAG
TAACTTGGTTTAATGTTGGCTAC
Run BLAST on NCBI

transcript from alignment at scaffold_358:400472..406101-

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00061437 ID=TCONS_00061437|Name=TCONS_00061437|organism=Clytia hemisphaerica|type=transcript|length=5630bp|location=Sequence derived from alignment at scaffold_358:400472..406101- (Clytia hemisphaerica)
TCACAAAGCAAAGGTTTTGTAAGTTTTATGTCTGACTTTTATAAAGTCAG
CTCATACAGTTTGGGAAAAATGTGTTTTGTCGTTTGTATTTGTTTTGATT
TTATTATAATATTAGGGAGGTTGAGGCTCGCGCCTGCGGCAGTAACAAAA
GCAGGACTTTTGAAAAAATTCTTCAAGCTTACATAAATCCAGGAAAGAAA
AGTTTTCTAGCATAAATTCTTTTTCCAACTTCAAGAGAATTTATTCAGCT
TTCTTTTGCAAAAGAAATTATCAAGATATGTCTTTTCGTTCTTTCAAAAT
TTGAAAATGAGTACTCGCGGGTGCGCTTTTTCAAACGTCTTGTTCAGGGC
ACAGGAAATTTAGAACATTAGACCAACTTATGGTATCGGCCTGAATTTTT
TTACATTTTCCCCCATAATAGTTTAGCTTTCGAAACGTACCACGGCTGAC
ATGAGTGTTCTACTTTTTTCAGGAAGTTAAAATAAGCACTTAAACTGCAA
ATATTTCCTTCAAATTTACAATATTTTTCAACCAACGTTATTATTTTAAC
ATGATAAATGTTTTTTCTTTCCAAATCTGAAAAAATCTTTAATCAAATAG
ATTCGGGTGGAAAGCGCTAAGGGAAAGTTAATGGTATGGTGACCCCCGTC
TGTAGCTTGAGCTACGGGAAAACCCACTTGCCCCAAACTTCTCTCAAGGA
TTTTTTTTGTGAAACACTTTTGATTTCAGTGCCGTGAAGAGGTTACAAGA
TGGTGGGAGGTTTTTGCACAGAAATCTTCAAAAAATGGAACTTCAAAATG
GAATATCTGGAAAACTACTAAAGGTTTTAAAGATGAGTGACCCCTGATTT
TTTTTCTGAGGATAAGGGCTNATATATTTGCAAATGAGTTTGAAATTTCG
ACTGACCACCCTCTAATAATATCCAGCAGAGGCTAGGCGGTCAGGCTTGA
TCACAAGTGTTACGGTGTAAGCCGAATCGCGTATTACGAACAACCTCTAA
ATTGCCGAGTATAGGAGAAAAAAAATCGAAATTCAAAATGGCGGCCAAAC
ATGGGATAACTGGATAACTATCAAAAATCTTAGTTTTTCAATCAGCTATT
GCAGCTCAATAAATCAATGAAATAATTTGAAATGAAAAGTAAACAAACCT
TGAACCTTTCATGAATCCAAATAAATAAAAGTATTCATCTAAAGTGAAGA
TTACATTTCAAAATAAAACGATTTCCAAACNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNGTGTCTGCCAACTAAAAACTTCTCTGC
GGGGTCACTGGCAAGGAGTTACGACTTCAGACTTTAGATTCCAATTCTTG
TATAGGCTGCAACTACACTGCCAAAATGATCTGTATTACAAAGACTTCCT
AATGGGTCCATAAGTTAAGAAAATGAGATTATCATCTAGCACGGGGGGTT
TTGTTTTTAAAAACAAACTTCAAAATAAAATTGTTAATGAACTTGTTACT
TAAAATATAACTTACTTACATAATTCATTTATGATATAACACCCCTTTCT
TAAATAAATGGCCTCTTAAAGTCTTTTATGTTTGCCGCAAAAAGGAAGAA
AAATTTAATTTGACCNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNTTTTTTTCTCTCTTTTTCTAGCCATTTC
CCGCGTGTTAGTGTAGACACAACTTTAATCCGGGGAAATGAAGCGTTTTC
ATTGGTCTAAAATCACGGATGGTCACGTGACCAGAATTCTTATCCAGGGA
AATGCCGTGGCCGCAATGTTTTGCTTTAGTGAGATTGACCATTTTGTTGT
TTAGATTTGAGCGGGCAAAATTTCTGTACAAATCAAAGTAGGGCTTCGTT
GGAATACCGGTTGAAACACTTGTGTGATAGGATCGATAGGCGACCCTACC
AATTCTCCAGACAATTCAAGGCAAATGTCCGGGGAATGAAAAAGAATATT
TTTATCCCCAGCCCAGACAAACAAACTGCGCAGCCAGATAAGTGAACCTG
TGATTGTGAGTTTTAACGCACAAACGATTGTGGTTTACAAATTTACATGA
ATGAAAGCGGGTAAAATAGGGATGGTGAAATTGATGCCAATGCAATCACC
TGATTGTTTAAGTACGTCGCGCGGACCGCCCGTTCAGTCTGGGGTAAGGG
GTCACTCACAAAGCAATTTTGCTTTGGGTTAGAAAAACGTCAATTGACGT
TTTAAAAGCTGAGCCACCCACCCACATCCTAAAACGTCAAACACCTGAAA
TCCCCAAATATCGATGAAAAACTGCCTTCATCAGCCATCTTGATTTTCAC
TAACGGCTTGCATAGTTTATATTTGAAAAAAAGAAACAGAGATCATTTCT
AAAAACTTGTTCAATCACAAAATTCCCATAATTAATTATCTCTGTAGTAT
ATAGTGACAGAAAGAATGGCCATCTGCAAAAATTCAAGGGTCATTTGGGC
CGTCAAACAAAGAAAAGACATAAACATTGGGCTGTTTGTTTTGGTTTTCA
AAACAGACGAAGCGATCAAACAGAAACATGGCGAGAAGTAATATTTGGCA
TGGAATGAAAAATCAATGTTTCTGGATTTGAAAAAAAACGTCAACAACCT
TTAACCCATCCACCCACTAATGTCAATTGACGTTTTTCTAACCTAAAATC
GATTTGTGAACGACCCCTAAGTCTAAAAAAGTAATGTTAAAATTCCCGGA
CACGCAACAAGAAAATCCCCGGAGTCCGAGGAATCCGCTGGGTCATATCG
ATAGCATAGAGTCCCCTGCCCAGTTAGTGACTGAAATTTTTTTATTCTAA
TTTTTCACTTACTTTTTACTTTTTTGAAAATCCTTTTCAACCAACGCTTA
GACAACTTTTAACATGCTCTTTGTGTTTGTTTTGATTTTTTATTTGACAG
GCTTGCTCTAAAATATATTAGAGAAAGAAATTAAAGAAATTAGAGAAGAA
AGTTATGGAGGAACAGAGTTAAAGTAACAAAGAAATTAGAGAAGAAAGTT
ACAGAGGAATAGACAGGCTAGCTCTAAAGCTCTAAAACAGCATCTAGTAA
CATGAAAACCAGAATATGATTTTTCAATGGGGATCAAAACTTTAAAGTGC
ACTCACAAATATCAATTTGTCAGATCTAACAAAATTAGTAACGATACTGT
CATCATTTGACGATCAAACAAAGGATATTCTATCTCTGTCAAGAACTTTA
CAAACATTCCGACAACTTTCATCAAAATATTCTATTGCAGCTAAGTTCTA
CCATTTTGCGCAGTTTGAGGATTAAGCTGAGTTGAAAAAAGAACTCCCTC
ATGGGAAAGTTTTTTTCAATCTGTCAATCATTTTCTTAAGTAAAAAGAAC
GCAAAATGATTCTAACTTTAGGAAAATGCCGCCAATCACAGTATTCAACT
ATAATAATTTTCCTTTTATTTTCATTTTTGAACTTTTGATTATCTTTTTG
CTGTCTGTTAAAAGCATTATACAAAATTATCTTACAGCTAAACTTATCAA
AAACTGATGGCTGTTGGTACTCAAGCTGGTGGTAGTATGATATATACTTT
TAGAGGAAAGTGGATTGCTGGTTTTATTTTGGTTTGTGTTTGTGTTTTGC
TATGGGTTCGTCATACTGCTTTACAAAAATCACCTGCTGATGTTGTTGAT
TTTCAAGATCCGAAAACAACACCATCTGCTTTTTATGCTAAGATACCTGG
TTTCACAAATCAACTTGTTTCTTTTGACCGGATTAGTTCAACGTGTTATC
AAAACAAAAGACCAGAAAGCATAGAGGACTTATCCAAATTTGTTGCCCTG
TTACATCAAAATAGGCAACATAAATTATGTGGTGAGCAGTATAAGCTTTT
CAAAGTGATTTATGCAATAAGGACGAAACAAACAACAGTTGTTTTGTCTG
AAACCTTTTTACCAAAAGTTCAAAAATGGATGAACGGAAATCAAGAGCTT
GTTGAAGCAACCAAGAAACAAACTATCATCTTTGTCGACAATAAATGGTC
ATTAGAAAGTGTTGTTTTCAATCCAGTCCGTGCCAAAAGACCTGGTGGAC
AAGGACAAGGTAGTGTTGCAGAATATGTAAACAATCTTATTGATAAAGCT
AAAGAAGGATGTGATTTTTGTTCATACAAAAAGTATACAGCTGCAGATGA
TTTTGGCATGTTAGAATCTGAGAGAACGGTTGCAATATCTAATACGTTCA
AGATTGAGAAATACCATGGAATGATTGTCTTTAAACAGCACGATCCAGTA
CATTTTGACCAAGATCAGTTTATAGATGCTATGGATCTAGCAATGAGATG
GTTCAAGACTGCGGCTGGTAGAGCAACTGATCATAAATATAGGCATATGT
ATTGGGATTGTTTACCGAAAGCAAGTGCTAGTCAAGTTCACCCTCACATT
CATTTAGCACTTGGGGACCATGCATATTATGCAAAATGGAATAGGTTACA
TAAAGCTGCACTCAAGTTCTCTGAGAGTGTACAAAATTGGAACTACTGGA
ATGCAATGCTTCAAGTTCATAATGCCCTTGGTTTAAGTGCACAGTAAGCT
TATTAATAATTTGTTTTGATATTAAACAGACGTGTTTAGAATAACTGCCA
TCAAGTTGCAGCAGTGTATTGGTCATTTGCTCATTAAAAGGGTCTATAGT
CATGAAAGTAAGCTTCAGGGCTTCTTGTAACTCAACCGAATATAAACTTT
TTTCGTTGATATTTTTTATTGTCTTTATGTAAACAAGACATGTAACTTCA
AAGTTTGAAGTTTTTACAATAATTCTTTTTTTAGAAGTTATATACTCCTT
TTTAAATTGAGAGAATATTGCCTACTAAACCAAAATTACCCAGCCCCAAA
AATGCAAGATGCTATTAGTATTTTGCCTTTATGTTTGAAGCTCATTATAT
AATTCCTTCTAATTTCATTACTTTAGCTTCAATTCTGCATCCATCATCTC
GTACATCACACCACAAAAAGATTTAGAAGTTGTCATTTTGGCCAAAAAAC
CATCCCAAGATTTTTTCAGATTATTTTATTTTGCAGTCCGTACATTTATG
GAGGACATGGGTCAATTTGCAATCAGCGCTGGCTGTGTCTTCCCAAAACT
TGATGCTAGCACAGACAATGGTGCTGAGCTACCAGCAATTTGTCGTTTAT
TATCCAGAGGAGCTGCTGACTTACCAAGAAGTGATGTCAGCTCTTTTGAT
TTATTTGGTACAGCTAATGTTAATAAGGATCCATTTGTTGTTATTAAGAA
AGTCAAGACCGCTTTGGAAAGGTTAAAGACTTCTAAGTTCACATATCAAC
CCAAGGATATGGAATAGGTGTTTTTTTTATGTAATTTTTGTATCAGTTTA
TTGTAGGTATTAGTTTTGTATATTTTTGGTGGAATAATTACATGATTAAG
ATCAGTTCATTCATAATTGTTTTTTATCTTTTACATAGTTTATTCATAAT
GTTATAGTAACTTGGTTTAATGTTGGCTAC
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_038542XLOC_038542Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00061437-exon-scaffold_358-1575043694:406089..406101TCONS_00061437-exon-scaffold_358-1575043694:406089..406101Clytia hemisphaericaexon
TCONS_00061437-exon-scaffold_358-1575043694:401409..402464TCONS_00061437-exon-scaffold_358-1575043694:401409..402464Clytia hemisphaericaexon
TCONS_00061437-exon-scaffold_358-1575043694:400472..401025TCONS_00061437-exon-scaffold_358-1575043694:400472..401025Clytia hemisphaericaexon
TCONS_00061437-exon-scaffold_358-1510915933:406089..406101TCONS_00061437-exon-scaffold_358-1510915933:406089..406101Clytia hemisphaericaexon
TCONS_00061437-exon-scaffold_358-1510915933:401409..402464TCONS_00061437-exon-scaffold_358-1510915933:401409..402464Clytia hemisphaericaexon
TCONS_00061437-exon-scaffold_358-1510915933:400472..401025TCONS_00061437-exon-scaffold_358-1510915933:400472..401025Clytia hemisphaericaexon
TCONS_00061437-exon-scaffold_358-1491911889:406089..406101TCONS_00061437-exon-scaffold_358-1491911889:406089..406101Clytia hemisphaericaexon
TCONS_00061437-exon-scaffold_358-1491911889:401409..402464TCONS_00061437-exon-scaffold_358-1491911889:401409..402464Clytia hemisphaericaexon
TCONS_00061437-exon-scaffold_358-1491911889:400472..401025TCONS_00061437-exon-scaffold_358-1491911889:400472..401025Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_358supercontigscaffold_358:400472..406101 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
5.59024	10.9027	25.8121	25.0257	16.9964	12.8586	18.6842	16.9155	24.3912	21.8044	19.9066	14.1437	12.9927	12.3217	10.2586	3.91501	14.5561	13.8682	8.70285	10.5377	13.2932	12.211	11.3675	9.58095	10.2872	22.8469	9.35783	2.43394	11.6012	1.63239
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00061437 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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