TCONS_00061448 (transcript) - C. hemisphaerica

Overview
NameTCONS_00061448
Unique NameTCONS_00061448
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1646

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00061448 ID=TCONS_00061448|Name=TCONS_00061448|organism=Clytia hemisphaerica|type=transcript|length=1646bp
CAGCAGGTTACAGCGTTttaattacaataaaaataatGATTAATTGGAGA
TCAACAAANGCCTTATGATCTTATAtgatttgttcttatataaaaaaacg
tgcaacactttaaagatttttaactaAAATTTTGGTTACAGCAGGTTACA
TTACAATAAAAATAATGATTAATTGGAGATCAACAAAGCCTTTAAAGGCT
CTCACTGTAATCTTGATGGTTGTGACTTTTTTATACTACAAGGAGGGTCT
GCCCAAGCGGAACAAAGCCACAACAGAGGGTCAACCAGATGAATTCCAAC
CAGATGAATTCCAACCAATTGAAGTTTACAAGCAAACATGGAAAGGAGAT
TGTCCATACCCAAAATATGTTGAAATGGAGAAACTGGAGAGACAGAAATG
GTTCCCACGGTATTTGCACCATCTGCAGAAAgtcaatttgaagaaaattg
ataaatatTATTGGAACGATAAGTGTGTCAGATGGTGGCATCCAAACCCG
AAAAATCCATGGCCCTTTTATCCACATCGTAAAATATCGTGGAAGCCCGC
CGTCCGACCAGGCCCAAGTTTTATCCGTCCGAATTGTACTTTTGGACAAG
AGCTGAAACCACCGACAACCTGTTCAAAAATGCGCCAACGATTATGGGAC
GAGTTGGATAAAATGGGAGCTGTTTATTTCCCTAGAAGTGGAACAGANTG
CCGTCCGACCAGGCCCAAGTTTTATTCGTCCGAATTGTACTTTCGGACGA
GAGCTGAAACCACcgacaaaatgttcaaaaatgcgCCAACGATTATGGGA
CGAGTTGGATAAAATGGGAGCTGTTTATTTCCCTAGAAGTGGAACAGAGT
TGGGTGTTTTAAGAGGAAGTTCTTATTTAACTTCAGATGGCGATATAGAC
ATACACGTAGACGTCCCTCAGGACATATTATTCAAAAGATTGCGTAAGGT
TTTAAAAGGCATTGCAATGGATCCGGGCGGCAGACCTTCGGCCGAAGTAA
GTTGGATACAAAGAGGATGTCCACATAATAAAATGGTTTTTAACGATTTC
ATGGTTGATGAAATGATGGAGGAAGGGNTGTTTTAAAAGGCATTGCAATG
GATCCGGGCGGCAAACCTTCGGCCGAAGTAAGTTGGATACAAAGAGGATG
TCCACACAATAAAATGGTTTTTAACGATAACATGGTTGATGAAATGATGG
AGGAAGGGGGTACAAGACCAACCCTCAAATCAGTATGTACGTGTTACATG
AGTTCTGAGCGATTATCGTGTCATAAAGATGCTAAGAATCGAATGTATGG
TCAGTACGGACCTTCATGGTTTGTACCACTTCACGTCAAATACTTAGATG
TTCCACACGGTGCACATGTAGACAAAAAATGtagaagaaaattggaaagC
CTGTTGTCACCTGATGGATTTATCTACGAAAAGGCCATCAGAGATCTGGA
TCCTAGTATTGTGTATGGCGAAGATGAAATGCAGATGATTTTAGCGCAAT
TAAATATACTTCATTACACGATCAAGACAACACTAGAGCATAAACGCACA
AAATATAAGAAAGGATATTTCTTTTTTAACGCGAAAGAAAATTAATTAGA
TGTTGTACGGCTCTTTTACAAATTTCTAGATACAATAGACTGTCGC
Run BLAST on NCBI

protein sequence of TCONS_00061448-protein

>TCONS_00061448-protein ID=TCONS_00061448-protein|Name=TCONS_00061448-protein|organism=Clytia hemisphaerica|type=polypeptide|length=215bp
MINWRSTKPLKALTVILMVVTFLYYKEGLPKRNKATTEGQPDEFQPDEFQ
PIEVYKQTWKGDCPYPKYVEMEKLERQKWFPRYLHHLQKVNLKKIDKYYW
NDKCVRWWHPNPKNPWPFYPHRKISWKPAVRPGPSFIRPNCTFGQELKPP
TTCSKMRQRLWDELDKMGAVYFPRSGTXCRPTRPKFYSSELYFRTRAETT
DKMFKNAPTIMGRVG
Run BLAST on NCBI

transcript from alignment at scaffold_358:491808..495334-

Legend: exonfive_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00061448 ID=TCONS_00061448|Name=TCONS_00061448|organism=Clytia hemisphaerica|type=transcript|length=3527bp|location=Sequence derived from alignment at scaffold_358:491808..495334- (Clytia hemisphaerica)
CAGCAGGTTACAGCGTTTTAATTACAATAAAAATAATGATTAATTGGAGA
TCAACAAANGCCTTATGATCTTATATGATTTGTTCTTATATAAAAAAACG
TGCAACACTTTAAAGATTTTTAACTAAAATTTTGGTTACAGCAGGTTACA
TTACAATAAAAATAATGATTAATTGGAGATCAACAAAGCCTTTAAAGGCT
CTCACTGTAATCTTGATGGTTGTGACTTTTTTATACTACAAGGAGGGTCT
GCCCAAGCGGAACAAAGCCACAACAGAGTGAGTAAATTTTTGTTATAACC
TGATAACAGATGGTTGGAATTTTCTTACGCGCACGGTATACTTCTGAAGG
CGNTTCTAACCTGATAACAGATAGTTGGAATTTTCTTACGCGCACGGTAT
ACTTCTGAAGGCGCTTGAAAATTAACTATTCGAGAATAATTGTCAAATCT
ATAACAAGAATCTTGTTTCACGCCGAAATGTCAAAAATTGAATTTTCTCT
AATAATGGCACTTTATATTCCAACACAATCTAGCGGTTCTTACGAAATCG
ATGTTATTCATTAGTTTGATTAGTTTTTCGACGGGCTTGACTGACTCTAA
AATCTCAAAGATCAAAATCAAAATAAAATTCATTTCATATTGTTCTTGTT
TTTGTCTTTAGGACAGAGTTGAAGTAGTCTAGACTTTAGCCCGATTCTTA
ATACTTCGACCCACTGTTCTTAAATTGTTCTTATATAAAATACTGTATGC
GACACTATTTTCATTGATGTTGCAAATCTTTCTGATACATCATAAGCAAA
GTTATTTTGGCCCACCTAAAATTTTTAAATTTTAGGTGGGCTAAAATAAC
TTTGCTTATGATGTATAAAGTGCTTAAGCACTTTATTTTTAATAAATTCT
AAATGTAGTGTGTATGCGACACACTTTTTCATTAACTTTGCAAAATTTTA
ACACCAGCATACATAAGCTATTCTTGCCCACCAAAATGTTAGTTTGAAAA
AAAAATCTCTCGACAAAATAATTTTCTTTTTTAAGTGTCATGTTTTTTAC
ATAGCCTATAATTTTTATAAGGGGTCAACCAGATGAATTCCAACCAGATG
AATTCCAACCAATTGAAGTTTACAAGCAAACATGGAAAGGAGATTGTCCA
TACCCAAAATATGTTGAAATGGAGAAACTGGAGAGACAGAAATGGTTCCC
ACGGTATTTGCACCATCTGCAGAAAGTCAATTTGAAGAAAATTGATAAAT
ATTATTGGAACGATAAGTGTGTCAGGTATAAAATAATGCAAAATCTCTTC
AAAGATTTATTACACACTGGATAAACGACTCAAAAAACGATGGAGAGCGA
TCATTGTATTTTCATTGTTCCAGAAAACAATTGATGTTCATACTTTGTCC
GCAAAGGACAACTGTCATGGCGGCTCGAAGATGTCTGATTTAAAAAAATG
TTTATCAGTCTTATTTTAAAAAAGTTCTCTATCTCTTTCTTTTTGTACAT
TTGCAGAAAAAAAGTTTGAAAGTAAGGCTAGCATACCAAGCTGGATACAT
TTGTGAAATCTGGTGTGAGAAAATCATCATTAGACAAGAAATTCAGANAT
TCAGACAAAATGCTTATAGTGACACGAAATTTTAAATTGGAAATATCTTT
CCAAGACTGTCCCCAGAAGAGCTGAAATTAGCATACATAAAACTTGAGTG
TCTTGGCTCCACTGTGGTATGAAAATCCTTTGGAGGCACGTGGTGGCAAG
GTGGTTTTTTTGAGGTTGAAGTTTGAAAATTTCCGGTGTCAACATTAAAT
TTCTTATACATAAACACGTCTTTTGCATCTTTCTCGCAGCTTGAAACGTC
ATAACGACTTAAAATTAGCAATTAAGTGGAAGAATCTGACTCTCACAGGA
AAGTTTTATGTCTCTTTTGGGAATTGGATGAGTGGTTTTCGATAAGAAAT
GCAATAAAAATGCTTCGAAAAAACATTTAATGAGGGAAGGAGAGTGAACA
ATAATATCGTTACTGCGGACATAGCTAGAACATGAGAAATCGGCAAAAAT
CTGTTACTTGTATATCCAGTGTATAATAAATCCTTGGTCTCTTCAACTCG
AATGTCTCCTTAAGTTGAATAAGTTTTCTCCTATCTACAGTCAACAATGT
CTTATAAACCTTACTCCGCAACTCGAAATTTCCTTAACTCCTTAACTCAA
AACAAATTTGTGTTCCCCGTGCATGTTATGAGTTGTAGAGACTTAATTTT
CTAGTCTATGCAATCTAAATTTGCCAGGAATGCCTTCGTTTAATAGGTGT
TAAAAATTTTAAGTTTCAAAAAGGTGTCTGAAAATTATTTATTTCCATTT
TTAACATCATAGATGGTGGCATCCAAACCCGAAAAATCCATGGCCCTTTT
ATCCACATCGTAAAATATCGTGGAAGCCCGCCGTCCGACCAGGCCCAAGT
TTTATCCGTCCGAATTGTACTTTTGGACAAGAGCTGAAACCACCGACAAC
CTGTTCAAAAATGCGCCAACGATTATGGGACGAGTTGGATAAAATGGGAG
CTGTTTATTTCCCTAGAAGTGGAACAGANTGCCGTCCGACCAGGCCCAAG
TTTTATTCGTCCGAATTGTACTTTCGGACGAGAGCTGAAACCACCGACAA
AATGTTCAAAAATGCGCCAACGATTATGGGACGAGTTGGATAAAATGGGA
GCTGTTTATTTCCCTAGAAGTGGAACAGAGTTGGGTGTTTTAAGAGGAAG
TTCTTATTTAACTTCAGATGGCGATATAGACATACACGTAGACGTCCCTC
AGGACATATTATTCAAAAGATTGCGTAAGGTTTTAAAAGGCATTGCAATG
GATCCGGGCGGCAGACCTTCGGCCGAAGTAAGTTGGATACAAAGAGGATG
TCCACATAATAAAATGGTTTTTAACGATTTCATGGTTGATGAAATGATGG
AGGAAGGGNTGTTTTAAAAGGCATTGCAATGGATCCGGGCGGCAAACCTT
CGGCCGAAGTAAGTTGGATACAAAGAGGATGTCCACACAATAAAATGGTT
TTTAACGATAACATGGTTGATGAAATGATGGAGGAAGGGGGTACAAGACC
AACCCTCAAATCAGTATGTACGTGTTACATGAGTTCTGAGCGATTATCGT
GTCATAAAGATGCTAAGAATCGAATGTATGGTCAGTACGGACCTTCATGG
TTTGTACCACTTCACGTCAAATACTTAGATGTTCCACACGGTGCACATGT
AGACAAAAAATGTAGAAGAAAATTGGAAAGCCTGTTGTCACCTGATGGAT
TTATCTACGAAAAGGCCATCAGAGATCTGGATCCTAGTATTGTGTATGGC
GAAGATGAAATGCAGATGATTTTAGCGCAATTAAATATACTTCATTACAC
GATCAAGACAACACTAGAGCATAAACGCACAAAATATAAGAAAGGATATT
TCTTTTTTAACGCGAAAGAAAATTAATTAGATGTTGTACGGCTCTTTTAC
AAATTTCTAGATACAATAGACTGTCGC

Coding sequence (CDS) from alignment at scaffold_358:491808..495334-

>TCONS_00061448 ID=TCONS_00061448|Name=TCONS_00061448|organism=Clytia hemisphaerica|type=CDS|length=1944bp|location=Sequence derived from alignment at scaffold_358:491808..495334- (Clytia hemisphaerica)
ATGGTGGCATCCAAACCCGAAAAATCCATGGCCCTTTTATCCACATCGTA
AAATATCGTGGAAGCCCGCCGTCCGACCAGGCCCAAGTTTTATCCGTCCG
AATTGTACTTTTGGACAAGAGCTGAAACCACCGACAACCTGTTCAAAAAT
GCGCCAACGATTATGGGACGAGTTGGATAAAATGGGAGCTGTTTATTTCC
CTAGAAGTGGAACAGANTGCCGTCCGACCAGGCCCAAGTTTTATTCGTCC
GAATTGTACTTTCGGACGAGAGCTGAAACCACCGACAAAATGTTCAAAAA
TGCGCCAACGATTATGGGACGAGTTGGATAAGGGTCAACCAGATGAATTC
CAACCAGATGAATTCCAACCAATTGAAGTTTACAAGCAAACATGGAAAGG
AGATTGTCCATACCCAAAATATGTTGAAATGGAGAAACTGGAGAGACAGA
AATGGTTCCCACGGTATTTGCACCATCTGCAGAAAGTCAATTTGAAGAAA
ATTGATAAATATTATTGGAACGATAAGTGTGTCAGATGATTAATTGGAGA
TCAACAAAGCCTTTAAAGGCTCTCACTGTAATCTTGATGGTTGTGACTTT
TTTATACTACAAGGAGGGTCTGCCCAAGCGGAACAAAGCCACAACAGAAT
GGTGGCATCCAAACCCGAAAAATCCATGGCCCTTTTATCCACATCGTAAA
ATATCGTGGAAGCCCGCCGTCCGACCAGGCCCAAGTTTTATCCGTCCGAA
TTGTACTTTTGGACAAGAGCTGAAACCACCGACAACCTGTTCAAAAATGC
GCCAACGATTATGGGACGAGTTGGATAAAATGGGAGCTGTTTATTTCCCT
AGAAGTGGAACAGANTGCCGTCCGACCAGGCCCAAGTTTTATTCGTCCGA
ATTGTACTTTCGGACGAGAGCTGAAACCACCGACAAAATGTTCAAAAATG
CGCCAACGATTATGGGACGAGTTGGATAAGGGTCAACCAGATGAATTCCA
ACCAGATGAATTCCAACCAATTGAAGTTTACAAGCAAACATGGAAAGGAG
ATTGTCCATACCCAAAATATGTTGAAATGGAGAAACTGGAGAGACAGAAA
TGGTTCCCACGGTATTTGCACCATCTGCAGAAAGTCAATTTGAAGAAAAT
TGATAAATATTATTGGAACGATAAGTGTGTCAGATGATTAATTGGAGATC
AACAAAGCCTTTAAAGGCTCTCACTGTAATCTTGATGGTTGTGACTTTTT
TATACTACAAGGAGGGTCTGCCCAAGCGGAACAAAGCCACAACAGAATGG
TGGCATCCAAACCCGAAAAATCCATGGCCCTTTTATCCACATCGTAAAAT
ATCGTGGAAGCCCGCCGTCCGACCAGGCCCAAGTTTTATCCGTCCGAATT
GTACTTTTGGACAAGAGCTGAAACCACCGACAACCTGTTCAAAAATGCGC
CAACGATTATGGGACGAGTTGGATAAAATGGGAGCTGTTTATTTCCCTAG
AAGTGGAACAGANTGCCGTCCGACCAGGCCCAAGTTTTATTCGTCCGAAT
TGTACTTTCGGACGAGAGCTGAAACCACCGACAAAATGTTCAAAAATGCG
CCAACGATTATGGGACGAGTTGGATAAGGGTCAACCAGATGAATTCCAAC
CAGATGAATTCCAACCAATTGAAGTTTACAAGCAAACATGGAAAGGAGAT
TGTCCATACCCAAAATATGTTGAAATGGAGAAACTGGAGAGACAGAAATG
GTTCCCACGGTATTTGCACCATCTGCAGAAAGTCAATTTGAAGAAAATTG
ATAAATATTATTGGAACGATAAGTGTGTCAGATGATTAATTGGAGATCAA
CAAAGCCTTTAAAGGCTCTCACTGTAATCTTGATGGTTGTGACTTTTTTA
TACTACAAGGAGGGTCTGCCCAAGCGGAACAAAGCCACAACAGA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_038547XLOC_038547Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00061448-proteinTCONS_00061448-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00061448-exon-scaffold_358-1575043694:495058..495334TCONS_00061448-exon-scaffold_358-1575043694:495058..495334Clytia hemisphaericaexon
TCONS_00061448-exon-scaffold_358-1575043694:494060..494263TCONS_00061448-exon-scaffold_358-1575043694:494060..494263Clytia hemisphaericaexon
TCONS_00061448-exon-scaffold_358-1575043694:491808..492972TCONS_00061448-exon-scaffold_358-1575043694:491808..492972Clytia hemisphaericaexon
TCONS_00061448-exon-scaffold_358-1510915933:495058..495334TCONS_00061448-exon-scaffold_358-1510915933:495058..495334Clytia hemisphaericaexon
TCONS_00061448-exon-scaffold_358-1510915933:494060..494263TCONS_00061448-exon-scaffold_358-1510915933:494060..494263Clytia hemisphaericaexon
TCONS_00061448-exon-scaffold_358-1510915933:491808..492972TCONS_00061448-exon-scaffold_358-1510915933:491808..492972Clytia hemisphaericaexon
TCONS_00061448-exon-scaffold_358-1491911889:495058..495334TCONS_00061448-exon-scaffold_358-1491911889:495058..495334Clytia hemisphaericaexon
TCONS_00061448-exon-scaffold_358-1491911889:494060..494263TCONS_00061448-exon-scaffold_358-1491911889:494060..494263Clytia hemisphaericaexon
TCONS_00061448-exon-scaffold_358-1491911889:491808..492972TCONS_00061448-exon-scaffold_358-1491911889:491808..492972Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_358supercontigscaffold_358:491808..495334 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
9.14583	7.64107	2.65318	3.92354	0.834929	0.807514	0.409049	0.527329	0.384635	0.318626	0.764447	0.155929	4.92538	5.89767	2.81852	2.63594	0.467952	0.508356	1.16548	2.56621	0	0.118721	6.10372	5.11626	0.277371	0.218551	0.731218	0.649681	3.00995	3.0386
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00061448 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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