TCONS_00061467 (transcript) - C. hemisphaerica

Overview


Name	TCONS_00061467
Unique Name	TCONS_00061467
Type	transcript
Organism	Clytia hemisphaerica (Jellyfish)
Sequence length	691

Sequence

The following sequences are available for this feature:

transcript sequence
transcript from alignment at scaffold_358:742604..747092-

transcript sequence

>TCONS_00061467 ID=TCONS_00061467|Name=TCONS_00061467|organism=Clytia hemisphaerica|type=transcript|length=691bp
GGAGTGAGTCTCTgcattcattaaaaaaaataatcattaatATTTGGTGG
CAATGGCACTTTGTGATCATTTGACAATTTGGCTGAATACTTTTGATGGT
TTGGAAGGACTTCATCAGACACCAGAAGATCTCTCTGATGGAGTAGCCAT
AGCTGAAGTGTTAACACAAATTGCACCAGAATGGTTTGATTCTGATTGGA
TGTCAAAAATCAAGCAGGATATATCTGACAATCACAGACTAAAAttgAGC
AACATGAAAAAGATCTTGAAGGGAATGGTTGATTACTATAATGAGGTTCT
CATGCAAGATTTGGAAACTTTCACTTGTCCTGATGTGTCGGTTATTGCTG
AGTTCAACAATAAAGATGAACTTGGACGCATGTTACAATTGGTGCTTGGT
TGTGCAATGAACTGTGAAGACAAAGAACaaTACATCCAAGCTGTGATGAA
CTTAGAATCAGATGTACAAATGACCGTAATGAACTGTATGCAAGAGcTAA
TGGAATTGAGGGAAAATTCGAGACTATCTGCTGATGAACCGGACTATGCT
gCAAATTTACGAAGCCCATCATTCACAAGTGCAGAAAGGGAACAGTTCAA
TCAGAAGATACATGAACTCCAAGAAACGGTACGAAAGTATCGCGAGGAAA
ACTCAACACTACAAATGGAAAACGAACGACTCATTTTGGGC

Run BLAST on NCBI

transcript from alignment at scaffold_358:742604..747092-

Legend: exon

Hold the cursor over a type above to highlight its positions in the sequence below.

>TCONS_00061467 ID=TCONS_00061467|Name=TCONS_00061467|organism=Clytia hemisphaerica|type=transcript|length=4489bp|location=Sequence derived from alignment at scaffold_358:742604..747092- (Clytia hemisphaerica)
GGAGTGAGTCTCTGCATTCATTAAAAAAAATAATCATTAATATTTGGTGG
CAATGGCACTTTGTGATCATTTGACAATTTGGGTAAGTGTTTTTCATTTC
TCTTTCATTTCAGAAAAAACTGTGGTGTATCAATTTTTTGTTTCATTATT
TGGGTCCTCTTTTAGAAAGAATTAAAGATGGAAAACCACTGTGACATATG
TTTTTGCTTTGCTAATTTATAGACAAAACACATAAAGTAATGCACTGTAA
GGTATTTATTCTGATGTGCTAATCAGAGCACAAGACTTTATTTTACCCTA
AACTTTCTTTTAAACTCTACTCTAGCTGAATACTTTTGATGGTTTGGAAG
GACTTCATCAGACACCAGAAGATCTCTCTGATGGAGTAGCCATAGCTGAA
GTGTTAACACAAATGTAAGCTAGCTCTCTTTTTCACATCTCTAGGTCTTG
ATTCAGTTTTTTTCCAAAATTGTTTGCGCATTTCTAAAATACACCAAATC
ACCAATTATTCCCAACTGTGAACAATGTTGATGATTATCGTTCATATTGT
AGCATGAAACTTTAATTACCAAAAGTACACATAGTTTTATTCTTCACTTT
TCCATCATCACAGCTCTGAGCTTTTACAGATCTCTTTTGGTGTATAGAAT
TCAATAAGAAAATTTTTGTATGAATCTCATAAACATAACACTTTAAGAGA
TGGAAAAAGTTTTTTGACAACTTTGTGGGGCCTAATTTAAAGCCCTCCCC
TTATTTTTTTGTTATTTCTTTCTACTAGTGCACCAGAATGGTTTGATTCT
GATTGGATGTCAAAAATCAAGCAGGATATATCTGACAATCACAGACTAAA
AGTAAGTTTAGTAATTTGCTATTAATTGAAGGAGCATGATAAATTTTGCT
AACTCAGGTCCAAGTTACAAACTTTAGTTTATGATACTCCAGGATTCAAT
AATTGTTCGATTCATTTTTCTTGACATATGATTCTGTAGTACTAATTTGA
GTATACACTTTGGGAAGGAGACATCCATTCAAAGTAATACTGTAAATGGT
TATATTGACTGTTATTGTTCTTCAAAATATTTCAGTTGAGCAACATGAAA
AAGATCTTGAAGGGAATGGTTGATTACTATAATGAGGTAATTGTTCAAAT
TTCTAAAAATTAAGTATTTTTAATTATCTTATTATTATTTTGCTTGGTAT
ACCTGGTCCTAGCAAAAATTGGTTCCTCCTTGTGAAAGGTGCTTCTGGCA
GGGATGTTAAACACACAATGAGCAATCGACAAATTAAATATAAAATGAGA
TCAAAATTAAGAACTTTTTGACTGCATCTATCTTAGGTTCTCATGCAAGA
TTTGGAAACTTTCACTTGTCCTGATGTGTCGGTTATTGGTAAGAACGAAA
CTTCAGCTTTCATACTAGCTTGGAATGGAAAGTATTCCTTTGTATATCTT
TGTGTCCTCAAGTTAGCTTTATCTTAGACGTACTGACATGTTGTCCAATC
ACAAAACTAGTGTCTGAAAAAGCATTTTTTCTGTCTAGCTAGCCATAAAT
TTGGCGATTGACCCTTTTTCTAGCTACATGAAACAGGGTCAATCTCAAAA
TTTATACTCAGACAAACAGAAAAATTCTTAGTTTTCTCAGGCAATACTTT
TGAGATTGGACCTTTTGATTTGTCAATGACGATATACTGTCTACACTGAG
AAAGAAGAAACACTGGTGATAAGGTTGGTGGCTATCATGTATACCATTTT
GGAGCTACACTTCTTAAAACTTCATGGCTTTCTTTTTCTAGCTGAGTTCA
ACAATAAAGATGAACTTGGACGCATGTTACAATTGGTGCTTGGTTGTGCA
ATGAACTGTGAAGACAAAGAACGTAAGTTCATTTTTGATTTAGTAGGAAA
ACGTTTGAGCTTTTTCTACAAACTGTATTTTTAAATGAAAAATAAAAACA
AAATGGTAAGGGTTAGTTTCTCTAAGGGTTGGGAATCTTGTTTTTAGACT
TTTTAAGCAAATCCCTTGAAAAGGCAATATCATTTTTAAGATACAGGTAG
CATCAAGACAACAAAAAAATCACACTGTCTTTACTACTTTTCTCCATTTA
TATATTAATAGCAGTGCTTTGTGTGTTTGTGTGTCACCACTTTCGTTTTC
GCTTTGTTTGTGTTTTAGAATTATGACTTTTAGTCTCTTGCTTCACAAAT
TTGTTCTATTGGATTCGCGCCATTTGCAAAAGATTTCGCAAGCAATGTTT
TGTTCTCGATAAGTTTGTTTTAATTGACAGATCGGATAGAGCCTGGTTTA
GACTTTATTCAGCCTTTGTTTTGAAATTTAAGGCCCATCTACATTTAGTA
ATATTAATTTCTGCCCAGCTTTGCTTGATCCTGTTTTTCTCTTTTCTTTT
GTTTGAAATGTTTTCGAATGTATTTAACGATCGTATTTATTAATGACATT
CGAATTCTTTTCAAACCAAACAAGTTTCTTTTATAGAAAAGAACATTTCA
AATGTAAATCAAAACATAAATTTAAAAAGTTTGTCGAACAATAACAGCAT
TCAAAGGGCGATAAAAAGCAAGAGAAGAAAGTAGTAGTCCCTGGTAGTCC
ATCTCTTTAACTGTGTACGTTATTTTACATGTTTAAATTCGAAAAGTTAT
GACAAGGGTTAAAAAAAACAATTTAGAATTGACTTATTTATCTTTTTAGA
TCTGATAAAAACAAAGTTGCACTATATTCTTTATGGCTTTCCCGCTTCTT
CATAAAGAATTGTCATTTTAACATTTCACTCCTCTTTACCATGACATTTT
CTCAAATTGTCGAAAACTGGACGGCGTATTTAATGCGAGCGAAGCGAGAA
AAAGATCTCCGGGGGAGGGTTAGAGTCAAACATATCTTTTTATTCATTTG
ATCGTTTTTTTAAGCCAGCTTCAACATCCAATAGACTTTTAGTGCGTTCA
GCTACAGCTTAACCGGCGTGCGACGCCGGGTACCGGCTAGTATAATATAA
ATGTACTTGCTCATTATTCTTCTAGTTTACGTTTCTTGCAAACTGGTGGA
TTTTGTTTATTTGATATTTCAGAAACATACTGCAAATTGAAATAGTTTTT
TAAAATGTGAGCTACACTGCATATTAAAAAATATTGAAAAAAAAGTTTTT
GAGAAGTCCAACTTAATATCCCTGAAACATTTGATATTTTCACATTACTG
TTGATTAAGTTTCAATTTTGCATGAATAATTTACGAACAAAGTATAGTAT
TCTTGTATGCCCCAAAGTAGTGTTTACCATTTCCTGGTGCTTTCTATGAA
TCAAGTTATACAAGTTCTAACATGTGTTTCCAAAGAATTGCATACGTGAT
ATATATTGGATAGAAAACTGGAAACCATTTTATAAAATTGGCCGAAATTA
GAATTTTTGTTACTCTTAGTTTCTCTGCTCTGAGCTCTTTAATAAGTTTT
GCTGATTTTTACTCTTTAGTTTGTACGTGTTATCATTTTGTTTTTTTCAT
TTTGTAGAATACATCCAAGCTGTGATGAACTTAGAATCAGATGTACAAAT
GACCGTAATGAACTGTATGCAAGAGGTATTGATATTGATTGGCAACATTG
TCAACATTATTTGATTCTTAGCATTTGCCCACAGAGCAAGATTGAGACAC
AATAGAGCTTTTGATACAATTTCTTTGTTGTTTTATTTTCAGCTAATGGA
ATTGAGGGAAAATTCGAGACTATCTGCTGATGAACCGGACTATGCTGTAA
GTTCAATTATGGGAAGAATTTTTTCTGGCTTTGATTTTTTTGATATGATA
TTGTACTTAAATATATTCTTTGTATCCCCTTATGCATGATTTGAATTTAC
ATATGAAGTTAGTTCTTGGAATCCAAACTATATACTAGAGTGTTTAAAAC
GTTGTAACTTATAATTCCTTTAGTAATTCTTTTTGCTTTCTTTTTCAGGC
AAATTTACGAAGCCCATCATTCACAAGTGCAGAAAGGGAACAGTTCAATC
AGAAGATACATGAACTCCAAGAAACGGTAAGAATATTATTAATAACTCCC
CATTAAACAGCCCTAAATAAAATAGTCCTTTACATTATTCTAAATTGATT
TTGAGTATTTGAGGATCAGTTAGGGAATTCAGCATTACATTAGACTTATT
TTGAAACCAGAGAGAATTATATTTCTCACCTTGAAATTGTTTAGGGAAGC
CCTTGGGGTATTGCTTCTATGCACAAGATACTCAAATGTTCTTGAGCTGT
CAGGTTTTAAACAGCCTAATATGTTTTTCATTTTTAAACATTTCAGAAAA
CTTATAGGTTAAAATTACCTAAAAGATGGCATATTTCCATTGCAAACTGG
ATATATACCTATATAAAAATGTCCCTCCAATTAGCACATATAATTGAACA
GAATCTAATATTATTTCCATTTTCAGGTACGAAAGTATCGCGAGGAAAAC
TCAACACTACAAATGGAAAACGAACGACTCATTTTGGGC

Gene-mRNA-Prot

This transcript is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
XLOC_038553	XLOC_038553	Clytia hemisphaerica	gene

The following exon feature(s) are a part of this transcript:

Position

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
scaffold_358	supercontig	scaffold_358:742604..747092 -

Expression

Values :

    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
4.53499	5.20603	1.12446	0.665536	22.3887	14.7896	14.6612	14.1205	9.97382	10.7125	8.07159	6.17077	7.55912	7.06093	5.48267	6.88126	4.50627	10.1031	3.90871	2.74957	9.31504	13.8001	5.48253	11.5471	19.4166	19.1642	3.17701	4.22918	8.00708	8.41774

Blast

[Close]

BLAST of TCONS_00061467 vs. Swiss-Prot (Human)
Match: HOOK3 (Protein Hook homolog 3 OS=Homo sapiens GN=HOOK3 PE=1 SV=2)

HSP 1 Score: 184.111 bits (466), Expect = 2.666e-53
Identity = 98/216 (45.37%), Postives = 143/216 (66.20%), Query Frame = 2

Query:   59 LCDHLTIWLNTFDGLEGLHQTPEDLSDGVAIAEVLTQIAPEWFDSDWMSKIKQDISDNHRLKLSNMKKILKGMVDYYNEVLMQDLETFTCPDVSVIAEFNNKDELGRMLQLVLGCAMNCEDKEQYIQAVMNLESDVQMTVMNCMQELMELRENSRLSADEPDYAANLRSPSFTSAE-------REQFNQKIHELQETVRKYREENSTLQMENERLI 685
            LC+ L  W+ TF+ ++   QT EDL++GV +A+VL +I P +FD +W+++IK ++ DN RLK+SN+KKILKG++DY +E+L Q +  FT PDV++I E ++  ELGRMLQL+LGCA+NCE K++YIQA+M +E  VQ  VM  +QELM   + S +SA    Y    R    T+ E       +E+  Q+ HEL   V   +EE S+L  EN+ L+
Sbjct:   12 LCESLLTWIQTFN-VDAPCQTVEDLTNGVVMAQVLQKIDPAYFDENWLNRIKTEVGDNWRLKISNLKKILKGILDYNHEILGQQINDFTLPDVNLIGEHSDAAELGRMLQLILGCAVNCEQKQEYIQAIMMMEESVQHVVMTAIQELMS--KESPVSAGNDAYVDLDRQLKKTTEELNEALSAKEEIAQRCHELDMQVAALQEEKSSLLAENQVLM 224

The following BLAST results are available for this feature:

BLAST of TCONS_00061467 vs. Swiss-Prot (Human)

BLAST of TCONS_00061467 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1


Match Name	E-value	Identity	Description
HOOK3	2.666e-53	45.37	Protein Hook homolog 3 OS=Homo sapiens GN=HOOK3 PE...	[more]

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TCONS_00061467 (transcript) - C. hemisphaerica