TCONS_00061540 (transcript) - C. hemisphaerica

Overview
NameTCONS_00061540
Unique NameTCONS_00061540
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length561

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00061540 ID=TCONS_00061540|Name=TCONS_00061540|organism=Clytia hemisphaerica|type=transcript|length=561bp
AAACTAAACTTGAAGAGCACTTTGTTCGAGCAAAATTACTCTTCAGAAGA
ATCCTTAGGTGGTTCTGCAAAATACTTATCAAAATAGGCTTCATAATGAC
TTTCAAGTTCCGCAATATTAGTAATTTGGTTATTGTTATCCTTCTGGACA
ACTCCCAAAATATACTTACTTTCCACATCGCCGTAAGTCTTTCTTTTCCA
ATTAAACATAAGTTCATTCGCCTTTGTCTTGATTTCGATTAAATCCACCT
TTCTATCCTCTCCTTCCTCAACGTCCTCCGTTACCTCAGCCAATCCAAGG
CGCGTGTTCCAAGCCACTGCAACATACTgtccttttgaaattttgggtGG
ATATGACTTTAATAGGAGGGACGATCGTTCTTGCTCTATTAGTTCTTGCT
CAATTGGTTCTTGTTCGGCCAGTTCTTGAACAGCTTGCTCGATTATGTCC
CGTTGTTCGTCCGTAAATGTTTGGTTTTGATTTGCCTCCTCTTGCCTCCT
CCTTTTTCTGTTCTGTCTGTATTGGTACACAGACACACCCTCTGAATCAG
CCTCTTTCCtt
Run BLAST on NCBI

protein sequence of TCONS_00061540-protein

>TCONS_00061540-protein ID=TCONS_00061540-protein|Name=TCONS_00061540-protein|organism=Clytia hemisphaerica|type=polypeptide|length=174bp
RKEADSEGVSVYQYRQNRKRRRQEEANQNQTFTDEQRDIIEQAVQELAEQ
EPIEQELIEQERSSLLLKSYPPKISKGQYVAVAWNTRLGLAEVTEDVEEG
EDRKVDLIEIKTKANELMFNWKRKTYGDVESKYILGVVQKDNNNQITNIA
ELESHYEAYFDKYFAEPPKDSSEE
Run BLAST on NCBI

transcript from alignment at scaffold_359:67282..67842

Legend: exonfive_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00061540 ID=TCONS_00061540|Name=TCONS_00061540|organism=Clytia hemisphaerica|type=transcript|length=561bp|location=Sequence derived from alignment at scaffold_359:67282..67842 (Clytia hemisphaerica)
aaGGAAAGAGGCTGATTCAGAGGGTGTGTCTGTGTACCAATACAGACAGA
ACAGAAAAAGGAGGAGGCAAGAGGAGGCAAATCAAAACCAAACATTTACG
GACGAACAACGGGACATAATCGAGCAAGCTGTTCAAGAACTGGCCGAACA
AGAACCAATTGAGCAAGAACTAATAGAGCAAGAACGATCGTCCCTCCTAT
TAAAGTCATATCCacccaaaatttcaaaaggacAGTATGTTGCAGTGGCT
TGGAACACGCGCCTTGGATTGGCTGAGGTAACGGAGGACGTTGAGGAAGG
AGAGGATAGAAAGGTGGATTTAATCGAAATCAAGACAAAGGCGAATGAAC
TTATGTTTAATTGGAAAAGAAAGACTTACGGCGATGTGGAAAGTAAGTAT
ATTTTGGGAGTTGTCCAGAAGGATAACAATAACCAAATTACTAATATTGC
GGAACTTGAAAGTCATTATGAAGCCTATTTTGATAAGTATTTTGCAGAAC
CACCTAAGGATTCTTCTGAAGAGTAATTTTGCTCGAACAAAGTGCTCTTC
AAGTTTAGTTT

Coding sequence (CDS) from alignment at scaffold_359:67282..67842

>TCONS_00061540 ID=TCONS_00061540|Name=TCONS_00061540|organism=Clytia hemisphaerica|type=CDS|length=525bp|location=Sequence derived from alignment at scaffold_359:67282..67842 (Clytia hemisphaerica)
aGGAAAGAGGCTGATTCAGAGGGTGTGTCTGTGTACCAATACAGACAGAA
CAGAAAAAGGAGGAGGCAAGAGGAGGCAAATCAAAACCAAACATTTACGG
ACGAACAACGGGACATAATCGAGCAAGCTGTTCAAGAACTGGCCGAACAA
GAACCAATTGAGCAAGAACTAATAGAGCAAGAACGATCGTCCCTCCTATT
AAAGTCATATCCacccaaaatttcaaaaggacAGTATGTTGCAGTGGCTT
GGAACACGCGCCTTGGATTGGCTGAGGTAACGGAGGACGTTGAGGAAGGA
GAGGATAGAAAGGTGGATTTAATCGAAATCAAGACAAAGGCGAATGAACT
TATGTTTAATTGGAAAAGAAAGACTTACGGCGATGTGGAAAGTAAGTATA
TTTTGGGAGTTGTCCAGAAGGATAACAATAACCAAATTACTAATATTGCG
GAACTTGAAAGTCATTATGAAGCCTATTTTGATAAGTATTTTGCAGAACC
ACCTAAGGATTCTTCTGAAGAGTAA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_038610XLOC_038610Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00061540-proteinTCONS_00061540-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00061540-exon-scaffold_359-1491911889:67282..67842TCONS_00061540-exon-scaffold_359-1491911889:67282..67842Clytia hemisphaericaexon
TCONS_00061540-exon-scaffold_359-1510915933:67282..67842TCONS_00061540-exon-scaffold_359-1510915933:67282..67842Clytia hemisphaericaexon
TCONS_00061540-exon-scaffold_359-1575043694:67282..67842TCONS_00061540-exon-scaffold_359-1575043694:67282..67842Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_359supercontigscaffold_359:67282..67842 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.100789	0	0	0	0.407759	0	0.12958	0.606557	0.289144	0	0.510564	0.457038	0.373209	0.626517	0.894358	0.790861	0.55886	1.39592	0.214282	0.448461	0.676573	0.71298	0.115563	0.268145	0.324638	0.461536	0.276404	0.442478	0.223736	0.569879
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00061540 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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