TCONS_00061551 (transcript) - C. hemisphaerica

Overview


Name	TCONS_00061551
Unique Name	TCONS_00061551
Type	transcript
Organism	Clytia hemisphaerica (Jellyfish)
Sequence length	1336

Sequence

The following sequences are available for this feature:

transcript sequence
protein sequence
transcript from alignment at scaffold_36:14771..17840+
coding sequence from alignment at scaffold_36:14771..17840+

transcript sequence

>TCONS_00061551 ID=TCONS_00061551|Name=TCONS_00061551|organism=Clytia hemisphaerica|type=transcript|length=1336bp
CTTGGTTGTGCCCAGAGGGTGTTTTACTTTGAGAAAATGGAGATTACAAT
CAAACAAATGCTGATTCTGGAACGTGATTTCAATGCACCTTGCAATAATC
AGTTAATGACTGGAGGGCAAATGACTCCTTCGGGGAGAGCACTTGCCTCT
CAAAGACACAAATTGAGATTGAGAACGATAAGGAAATCGACTGATGCTGT
CTGGCCACCCAAGTCGGTAGATCTTCCGACATTTGAAAGCGACAAGTTAT
CAAACATCATGAAATTGGAAGATATTTTGACGGACCTAAAATCAAAAAGC
CTCTTCGGGCAAATGGACTTGGATGACATTAGAACTATGGTCAAGAATAG
GATGACCCAGCGACGACGAGAATCAAGGAAAAGAAGCATTGACTTTACCA
AGGAAAAGGATCTTCGAAAAATGGACCAATATCTCCTATAAGAACGAAAT
CTCCAAAAACCAGACCAACATCAGCAAAGAAATCAGAAAagTTCAGCACT
CTCACTCGCCAAGATCACCGAGACCCATCAAAAAGTTATCAGATCTCACA
AGCAATGACCTGAGAGAAGTGACGAGATTGTTTACAGATAAAACAGAACT
GAACAAGCGTGCAATCTTCAATGAAGTCTCGTCTTTCAAACAACTAAAAA
TCAAAACACAAAATGTTATGACCGTGGAGGCAATGGCTGAAGATGATTGA
CATGAAATTGAAATCACTAGCTAAAGAACTCTTGAAGTCGCCCAGAATAT
ATACAGATATTTATTATATCTTTATATCAAGCTTTTGTtaatatttcatt
gattttaaatAATATCAGATAAACAATTTCAGATAtttatctttaaattt
ttatttgcatACAAAAGATATAAATAttgtataaaatattttaatatata
taaaaaagttcTTGTTTCCAAGGAAAAAAGCAATTATCGCCAAAAGATAA
AGGTCAAATCCGTTTTTTCATGTGCTTCCGATGAGAAACTTGACGTAATT
TTGACCATGTTGAGGGGGTGGGATTTGGCTTTGGAAAAAGGAACATGTAC
AGGTCTGGGAACAGTACATTTTTGGGGTGGAAAATGCCTTTTTTCGGGGC
TGGGGAAAATGGAACGTGTACAGGTCTGGGAACAGGGCATTTTCGGGGTA
GCAAATGCCTTTTTTTGGGGATGGGATTTGGCTTTGGAAAATGAAGCATT
TTCCACCccggattttttttaatttcggggCCGAAAATGACCAGCTCCAC
AACCCGTGATTTTTGTCTACTAAAAACACCGACCTGAAAACTAGCAATTT
TCGACCccgaaagtttgaaaatctagcCCTTGGGAA

Run BLAST on NCBI

protein sequence of TCONS_00061551-protein

>TCONS_00061551-protein ID=TCONS_00061551-protein|Name=TCONS_00061551-protein|organism=Clytia hemisphaerica|type=polypeptide|length=146bp
LGCAQRVFYFEKMEITIKQMLILERDFNAPCNNQLMTGGQMTPSGRALAS
QRHKLRLRTIRKSTDAVWPPKSVDLPTFESDKLSNIMKLEDILTDLKSKS
LFGQMDLDDIRTMVKNRMTQRRRESRKRSIDFTKEKDLRKMDQYLL

Run BLAST on NCBI

transcript from alignment at scaffold_36:14771..17840+

Legend: exonCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

>TCONS_00061551 ID=TCONS_00061551|Name=TCONS_00061551|organism=Clytia hemisphaerica|type=transcript|length=3070bp|location=Sequence derived from alignment at scaffold_36:14771..17840+ (Clytia hemisphaerica)
CTTGGTTGTGCCCAGAGGGTGTTTTACTTTGAGAAAATGGAGATTACAAT
CAAACAAATGCTGATTCTGGAACGTGATTTCAATGCACCTTGCAATAATC
AGTTAATGACTGGAGGGCAAATGACTCCTTCGGGGAGAGCACTTGCCTCT
CAAAGACACAAATTGAGGTAAGAATTCGGAATCTAATAAATATTACTTAA
GTTCTTTGTGCTTGATAAACCCTGTGCAGCCTCTAACAGGTTATCATTAA
TCTAGCAGGCCTAGTTTGTGGTTTTGAGAGGGGTAAATCACACCAAGAAA
TAGTGTGAAGGCTCTTCAATTTTTGAGAGGTTTGAGATTGAGGGTCTACA
AGtcttattttatattttcaatttgtttaaaCAGATTGAGAACGATAAGG
AAATCGACTGATGCTGTCTGGCCACCCAAGTCGGTAGATCTTCCGACATT
TGAAAGCGACAAGTTATCAAACATCATGAAATTGGAAGATATTTTGACGG
ACCTAAAATCAAAAAGCCTCTTCGGGCAAATGGACTTGGATGACATTAGA
ACTATGGTCAAGAATAGGATGACCCAGCGACGACGAGAATCAAGGAAAAG
AAGCATTGACTTTACCAAGGTTAGATACTGTTTTCATTTTACAGAATTCA
TACAGTGTCGTTTTTATTTCCCCTGTGTAACTGAtgtataagtaagtaag
tatattcatctggtggctgtcggcggagcggtaagtgagggagtctatcc
ccttttctatttgcgctagacctgggtgatcgaatgctgaggtggagtgc
CACACCTACTCTCTGCTCCCAGTTACTTACCCcttagatcagattaccca
atctaagctactcattcgctgagttgccggtgaccggggatcgaacccac
aacccttggattgtaaggcgaatgcccTAACGACCAAGCTACTCGGCCTC
AAATGTATATTGATGTATATTCTAGTGAAATCACTTTACAAAGAGCCTCA
ATACAGTCAGCTATTCTCATTTTTCTTAGGAAAAGGATCTTCGAAAAATG
GACCAATATCTCCTATAAGAACGAAATCTCCAAAAACCAGACCAACATCA
GCAAAGAAATCAGAAAaggtaaataaattcatttatttgGTAATAGCTTG
ATCTAAGGGCTGCACTTCTTAAATTATATAAGCTAAattcttgtcaattt
ttttatgttgATAGCAAATTTTCATGGGTTCAATTTTTAagcattaaaat
tttttttctgctaATACGGGGTTCCCCGTGGTCAGTGAAAACCTGGAAAG
TCAATGAGTTTTTGTAAAATTCCTCAAAAGTCAGGGAAGTTCTTTCCAGA
ATCCCTTGAAATTGatggtttttttaaatttaatcatTCCTATATTTCTT
TTAGTTCAGCACTCTCACTCGCCAAGATCACCGAGACCCATCAAAAAGTT
ATCAGGTAGGTGCAtgtgtttctttttaaaaactcaaattttaagAGTCA
AGCCGGCAAAGTTTAAGTTTGCCTAAATTTCCTACcctgtcaaaaaattt
tcaagtttaaaaatggGTAAAATGTATTTTTGTAGTTTTCCAAAAAACTT
TTCTGGTATAAATGTTGGTAATGAATAGGCACTGTGTGTAAAATTTTAGT
CTCAANTGCCTAAATTTCCTACCctgtcaaaatattttcaagtttaaaaa
tgggtaaaaagtatttttgtagttttccaaaaaactgTTCTGGTATAAAT
GTTGGTAATGAATAGGCACTGTGTGTAAAATTTTAGTCTCAATCAAGACT
TCAATATTGATAAATAACATGACTTCATTTCTTTTAGATCTCACAAGCAA
TGACCTGAGAGAAGTGACGAGATTGTTTACAGATAAAACAGAACTGAACA
AGCGTGCAATCTTCAATGAAGTCTCGTCTTTCAAACAACTAAAAATCAAA
ACACAAAATGTTATGACCGTGGAGGCAATGGCTGAAGATGTAGGTCGACA
ATTAATTAAACACAAAATGGTATTGGTGTATAGTGTGCCTGTTAAAGACC
TAGACGATGTTTTCATTATCGCAAAGTAACTCTTTACGAAGATAGAACCT
CTGTTAAAATTTTGTTTTATTATTGCTTTCATTGTTGGATGGATGGATTT
CCCATGTTTGTATTTATATTACAACCCACGAAAACCGAAAAcgtttttct
atattttcactgacagatttttttatcataaattttgTTACCTCTTTTTA
ATTAGTATTCTGCTTAATGCAACAAACATAGCAGTGTAAAAACTGAAAGC
TAGTAATTTATTCgctttttgtatttgttttttaatttgatacccCTGTT
GGGGTAGGGTAGGGACTACTAGTAGTAAAAGTATTGCCACGTTAAACACA
TTTTCAAATCTTTCTGGATATATTTCAGGATTGACATGAAATTGAAATCA
CTAGCTAAAGAACTCTTGAAGTCGCCCAGAATATATACAGATATTTATTA
TATCTTTATATCAAGCTTTTGTtaatatttcattgattttaaatAATATC
AGATAAACAATTTCAGATAtttatctttaaatttttatttgcatACAAAA
GATATAAATAttgtataaaatattttaatatatataaaaaagttcTTGTT
TCCAAGGAAAAAAGCAATTATCGCCAAAAGATAAAGGTCAAATCCGTTTT
TTCATGTGCTTCCGATGAGAAACTTGACGTAATTTTGACCATGTTGAGGG
GGTGGGATTTGGCTTTGGAAAAAGGAACATGTACAGGTCTGGGAACAGTA
CATTTTTGGGGTGGAAAATGCCTTTTTTCGGGGCTGGGGAAAATGGAACG
TGTACAGGTCTGGGAACAGGGCATTTTCGGGGTAGCAAATGCCTTTTTTT
GGGGATGGGATTTGGCTTTGGAAAATGAAGCATTTTCCACCccggatttt
ttttaatttcggggCCGAAAATGACCAGCTCCACAACCCGTGATTTTTGT
CTACTAAAAACACCGACCTGAAAACTAGCAATTTTCGACCccgaaagttt
gaaaatctagcCCTTGGGAA

Coding sequence (CDS) from alignment at scaffold_36:14771..17840+

>TCONS_00061551 ID=TCONS_00061551|Name=TCONS_00061551|organism=Clytia hemisphaerica|type=CDS|length=1323bp|location=Sequence derived from alignment at scaffold_36:14771..17840+ (Clytia hemisphaerica)
CTTGGTTGTGCCCAGAGGGTGTTTTACTTTGAGAAAATGGAGATTACAAT
CAAACAAATGCTGATTCTGGAACGTGATTTCAATGCACCTTGCAATAATC
AGTTAATGACTGGAGGGCAAATGACTCCTTCGGGGAGAGCACTTGCCTCT
CAAAGACACAAATTGAGATTGAGAACGATAAGGAAATCGACTGATGCTGT
CTGGCCACCCAAGTCGGTAGATCTTCCGACATTTGAAAGCGACAAGTTAT
CAAACATCATGAAATTGGAAGATATTTTGACGGACCTAAAATCAAAAAGC
CTCTTCGGGCAAATGGACTTGGATGACATTAGAACTATGGTCAAGAATAG
GATGACCCAGCGACGACGAGAATCAAGGAAAAGAAGCATTGACTTTACCA
AGGAAAAGGATCTTCGAAAAATGGACCAATATCTCCTATAACTTGGTTGT
GCCCAGAGGGTGTTTTACTTTGAGAAAATGGAGATTACAATCAAACAAAT
GCTGATTCTGGAACGTGATTTCAATGCACCTTGCAATAATCAGTTAATGA
CTGGAGGGCAAATGACTCCTTCGGGGAGAGCACTTGCCTCTCAAAGACAC
AAATTGAGATTGAGAACGATAAGGAAATCGACTGATGCTGTCTGGCCACC
CAAGTCGGTAGATCTTCCGACATTTGAAAGCGACAAGTTATCAAACATCA
TGAAATTGGAAGATATTTTGACGGACCTAAAATCAAAAAGCCTCTTCGGG
CAAATGGACTTGGATGACATTAGAACTATGGTCAAGAATAGGATGACCCA
GCGACGACGAGAATCAAGGAAAAGAAGCATTGACTTTACCAAGGAAAAGG
ATCTTCGAAAAATGGACCAATATCTCCTATAACTTGGTTGTGCCCAGAGG
GTGTTTTACTTTGAGAAAATGGAGATTACAATCAAACAAATGCTGATTCT
GGAACGTGATTTCAATGCACCTTGCAATAATCAGTTAATGACTGGAGGGC
AAATGACTCCTTCGGGGAGAGCACTTGCCTCTCAAAGACACAAATTGAGA
TTGAGAACGATAAGGAAATCGACTGATGCTGTCTGGCCACCCAAGTCGGT
AGATCTTCCGACATTTGAAAGCGACAAGTTATCAAACATCATGAAATTGG
AAGATATTTTGACGGACCTAAAATCAAAAAGCCTCTTCGGGCAAATGGAC
TTGGATGACATTAGAACTATGGTCAAGAATAGGATGACCCAGCGACGACG
AGAATCAAGGAAAAGAAGCATTGACTTTACCAAGGAAAAGGATCTTCGAA
AAATGGACCAATATCTCCTATAA

Gene-mRNA-Prot

This transcript is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
XLOC_038620	XLOC_038620	Clytia hemisphaerica	gene

The following exon feature(s) are a part of this transcript:

The following polypeptide feature(s) derives from this transcript:


Feature Name	Unique Name	Species	Type
TCONS_00061551-protein	TCONS_00061551-protein	Clytia hemisphaerica	polypeptide

Position

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
scaffold_36	supercontig	scaffold_36:14771..17840 +

Expression

Values :

    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0	0	0	0	0.937577	0.658359	0.18868	0	0.279728	0.735329	0	0	0	0	0	0	0	0	0	0	0	0	2.69826	1.60527	0	0	1.31323	0	24.0045	13.0581

Blast

The following BLAST results are available for this feature:

BLAST of TCONS_00061551 vs. Swiss-Prot (Human)

BLAST of TCONS_00061551 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0


Match Name	E-value	Identity	Description

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TCONS_00061551 (transcript) - C. hemisphaerica