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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00061620 ID=TCONS_00061620|Name=TCONS_00061620|organism=Clytia hemisphaerica|type=transcript|length=2008bp
Atttactagacggttcccgtcgtcgcaaacgccggttaacggttttgctt
gcacatcaaaagcctttaaaatactataatgtgggttaatgcCTGACATC
GTTNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNttttccagccgcggcgttcaaattttagaaaccttaacat
atgttactgggctagcgttacagacatttttcataaactcatttagtata
gtaagattcaaagtcaaaattctttgttaatcTTAGGTACAACACTCGAT
GGGATGAAGTATACGCAATGTATGGTACAACCATGTTGGCTTGTCGTGGT
ACAACTGAAATGTGGTTCGATGTGATGATGTCACACAAAGATCTCGGAAT
GATGATGGCTGTTTTGTCTCTCATTGCTATCATCTTATATTTCGTGACAA
GTTCTGATTCTGGCTCTCTTGTCATTGACTGCTTGTCTGCTAATGGAAAC
CCCGAACCACCTGTAATGCAAAGAATCTTTTGGGCTTTGACTGAGGGAGC
TACAGCAACCGCTTTATTGAAAGCTGGAGGCTCAGAAGCACTTTCTGCCT
TACAGACAGTTTCTGTTGCGTGTGGTCTGCCGTTTACATTTTGTTTGAAT
TGGACATGTGTTGCAATGTGGAGAGCTGTTCGTGAGGAATATGGTGAAAT
TGACGAACAAGAAGGGAGATGGTATCGAAGTATGTGGTCAATCGCCGACT
TCAGAATCCTCGCTCAGATTCCTCTCGATATCGTTGCACCCTGGTATCGA
CTGGCCAAGTTAAGATTGAAGCTTGACAAACAAGAGTCGAATGGTGGTAT
GTTCATTTTGTACGCAATCCAGTTTGGATTACCATTCTATTTGTGGatta
ttttgatgattgtgGAAGTTGGTGTAGAGCAAATCTCATATGTTGCTTGG
GCCTGTTTGATGGCTTTTTTCGCTTTCTCAAGTGGTGTACGTGGTGAAAT
CAGAGAGCAATTTGATATTGAAGGAAACATGATTGAAGATCTTTTCACAA
TGGTGTTGGTGTATCCTTTGGCTTTGTCTCAACAAAATGATCAGATGATG
TATGGTGAAAAATACAAAGAGCAACAACACAACGGGCTTGAGATGGGTGT
AAACGGTACTTATATTCCCAACGCTTCAAACGCCCACTACCCACCACCAC
CCATCTACCCTTCGAATGGTGGTTATGTCATTAGTGCACCACCCAATGGA
AaccaaaaaatgtaaataacaaaaattaaaaacaataaaatggtATAAAC
TTTGGTCTATCTACCATACTTGTATAATACTTCTTTTAAAGGGTGTCAGA
TAGGGATAGGTCAATTCTCTATCCGCTGTTACTCTAAATGTTGGTATTTA
ATAGCAGTGCACCATCTATTTTATATACGACATTGTAGTACACTTTTCTC
ATGAGtagaatttgtaaaatattttagagTAAAATTTAATGTTAATGAAG
CGTATTTTACTTTTGTACATAGATATGCACtttgaaaatcgggaaaatca
gAAGGTATACGCTGGCGGATGTAAGACAATAACTGTGCGCCTTAaacgaa
aaaatcttttttgaagccttcgaatgttctcaAATTCTTGAGTTTTAGGC
TTTACATGTGTTCTtaaaaaatgttgttattttcacGATCATACGAGTAT
TCttgtgcaatttcttaagaaatttagactttttttttaGAGTCAATAAA
GCcggaaaatgttcttaacttgttattGAATATTAATGCTTTTGCTACTG
AAGCCTGATCGAgcctgatattcttatatacatgttgttttttaataagc
aagtgTCCACCCCTATGTCATTGCTTGCATTATGCTtggcattctattgt
tcttaaacaattGAGCCATTGTTTGGGTACAAAAAACTGAgactgcatat
gcttataaacgttatgcttatagaaaaaacatgtctagtttgttctcata
aaaacgtg Run BLAST on NCBI transcript from alignment at scaffold_36:1096217..1098224+ Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00061620 ID=TCONS_00061620|Name=TCONS_00061620|organism=Clytia hemisphaerica|type=transcript|length=2008bp|location=Sequence derived from alignment at scaffold_36:1096217..1098224+ (Clytia hemisphaerica)
Atttactagacggttcccgtcgtcgcaaacgccggttaacggttttgctt
gcacatcaaaagcctttaaaatactataatgtgggttaatgcCTGACATC
GTTNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNttttccagccgcggcgttcaaattttagaaaccttaacat
atgttactgggctagcgttacagacatttttcataaactcatttagtata
gtaagattcaaagtcaaaattctttgttaatcTTAGGTACAACACTCGAT
GGGATGAAGTATACGCAATGTATGGTACAACCATGTTGGCTTGTCGTGGT
ACAACTGAAATGTGGTTCGATGTGATGATGTCACACAAAGATCTCGGAAT
GATGATGGCTGTTTTGTCTCTCATTGCTATCATCTTATATTTCGTGACAA
GTTCTGATTCTGGCTCTCTTGTCATTGACTGCTTGTCTGCTAATGGAAAC
CCCGAACCACCTGTAATGCAAAGAATCTTTTGGGCTTTGACTGAGGGAGC
TACAGCAACCGCTTTATTGAAAGCTGGAGGCTCAGAAGCACTTTCTGCCT
TACAGACAGTTTCTGTTGCGTGTGGTCTGCCGTTTACATTTTGTTTGAAT
TGGACATGTGTTGCAATGTGGAGAGCTGTTCGTGAGGAATATGGTGAAAT
TGACGAACAAGAAGGGAGATGGTATCGAAGTATGTGGTCAATCGCCGACT
TCAGAATCCTCGCTCAGATTCCTCTCGATATCGTTGCACCCTGGTATCGA
CTGGCCAAGTTAAGATTGAAGCTTGACAAACAAGAGTCGAATGGTGGTAT
GTTCATTTTGTACGCAATCCAGTTTGGATTACCATTCTATTTGTGGatta
ttttgatgattgtgGAAGTTGGTGTAGAGCAAATCTCATATGTTGCTTGG
GCCTGTTTGATGGCTTTTTTCGCTTTCTCAAGTGGTGTACGTGGTGAAAT
CAGAGAGCAATTTGATATTGAAGGAAACATGATTGAAGATCTTTTCACAA
TGGTGTTGGTGTATCCTTTGGCTTTGTCTCAACAAAATGATCAGATGATG
TATGGTGAAAAATACAAAGAGCAACAACACAACGGGCTTGAGATGGGTGT
AAACGGTACTTATATTCCCAACGCTTCAAACGCCCACTACCCACCACCAC
CCATCTACCCTTCGAATGGTGGTTATGTCATTAGTGCACCACCCAATGGA
AaccaaaaaatgtaaataacaaaaattaaaaacaataaaatggtATAAAC
TTTGGTCTATCTACCATACTTGTATAATACTTCTTTTAAAGGGTGTCAGA
TAGGGATAGGTCAATTCTCTATCCGCTGTTACTCTAAATGTTGGTATTTA
ATAGCAGTGCACCATCTATTTTATATACGACATTGTAGTACACTTTTCTC
ATGAGtagaatttgtaaaatattttagagTAAAATTTAATGTTAATGAAG
CGTATTTTACTTTTGTACATAGATATGCACtttgaaaatcgggaaaatca
gAAGGTATACGCTGGCGGATGTAAGACAATAACTGTGCGCCTTAaacgaa
aaaatcttttttgaagccttcgaatgttctcaAATTCTTGAGTTTTAGGC
TTTACATGTGTTCTtaaaaaatgttgttattttcacGATCATACGAGTAT
TCttgtgcaatttcttaagaaatttagactttttttttaGAGTCAATAAA
GCcggaaaatgttcttaacttgttattGAATATTAATGCTTTTGCTACTG
AAGCCTGATCGAgcctgatattcttatatacatgttgttttttaataagc
aagtgTCCACCCCTATGTCATTGCTTGCATTATGCTtggcattctattgt
tcttaaacaattGAGCCATTGTTTGGGTACAAAAAACTGAgactgcatat
gcttataaacgttatgcttatagaaaaaacatgtctagtttgttctcata
aaaacgtg
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00061620-exon-scaffold_36-1491911889:1096217..1098224 | TCONS_00061620-exon-scaffold_36-1491911889:1096217..1098224 | Clytia hemisphaerica | exon |
| TCONS_00061620-exon-scaffold_36-1510915933:1096217..1098224 | TCONS_00061620-exon-scaffold_36-1510915933:1096217..1098224 | Clytia hemisphaerica | exon |
| TCONS_00061620-exon-scaffold_36-1575043694:1096217..1098224 | TCONS_00061620-exon-scaffold_36-1575043694:1096217..1098224 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_36 | supercontig | scaffold_36:1096217..1098224 + |
Blast
The following BLAST results are available for this feature:
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