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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00061717 ID=TCONS_00061717|Name=TCONS_00061717|organism=Clytia hemisphaerica|type=transcript|length=1617bp
aatcgagacatgaaaaatgactatattgtaatctgttttcaatgaataat
ctaaaatgtactggagatgacatttataggcgttaataatgtgcgcgcgc
tcttttgCGAGCGTGACTacgcgtgatggaaggcggtcgtttcagtgtgg
tttagatccacactgtgacctagtactCTCAAATAGTGTACCATATAAGT
TATTAGAAAATGTAAGCAATATGATGAAAGGAGTAGAAAAGGAtgagatt
ttccaaaattattgataaaaaacGGGTTGTCCgaaagaatgttttaaaaa
ctaATGGATATTATTTTGAGGATGAAAATTACATGAGTGTAATAGTAAAG
AGTGTATCTTTCAGAAAATAGCAATATATTTACCGAAAGAGAGACATAGG
ATAAAATATTCCACTTTTCATGTCACCCGAAATCGAAAATTGTGGAATTC
ATCATCCTTTTCTACTccttaaatttaaatttcaaagtttATGGTATCAA
CAGTAGATTTCCGAAGAGTTTAGATGATAAAACCGTTTAAAAAAACTACT
ATAGTAAAAAtccgaaaatcttgattttctgGAATATTTCGTCCCAAATT
ACTTCGAAACTTATATCATTGGAATCCTCGTGGAAAAAAAATACGTCATT
TCTCTGAAAATAAGGTCCGAAAATTCCTAACATCAAAGAAGATATCGCGA
AAAAGATTATTTTAAAGATCTGTGAAAAGTCCATCAGGTACATTCTAAAA
AAACACCGACTTACACATTCTCAACATATAGTAGGGTTAACTAATTCTGG
AATACTCCAAAGATAATTTGACCAAAATGGTAATATAAACTGTAAATATG
TTAGTAATAAGTCTTTTAAAATAGGGTATGATtgtatttttgatcaaaat
gaaaGTGTAAAAATTAAATCTGGAAAGATGATGATGAAAGTTTGCACAAA
ATCGTGTATAAATATACcttattttaatgttttgttGTAATGGTACATTT
GCTAGTTGCGTAAAGATATTGCGAATCGGTGTTTCGTACGTTATCAAGAA
TAGTGATTTACGTGTTAAAGAATATCTCAGATTTAGCGATTGGGTAATAG
AATCCTTTGCTACTGATAGAccgtttcataaattacgttgcGAGCAACac
ctgcctcgttttgaaattattgccatgttGATTAACTCCtagtggatttt
attaaaactacttcatattcataaaaaaaatatttaatctcTCAAGGGac
cataatcaccatggtatttttttttaaatacgaaGCAagcgatgttcgtg
acgtaatttatgaaaaagtctattgCTACTACAATTTCCTCAAATTTTTC
TAGAACTGTTCGGAGTCTTTGTGCGAGAATGACTACTGATTTCTAAGTTT
GCTGAATGCGTATTCCTAAATGTTAACACAGTGGTCATTCGATCTACAAG
GGGGCTtggtaatttatgaaaaggtctattagaaagtagagcgtcgttta
tgagttACTTGTTGACggtggctttcaatattatcaaataatggagcgta
tcgaataatagagcgtcATTTGCGAGAGATTCttattgacggtgactttc
gatattatcgaataatg Run BLAST on NCBI transcript from alignment at scaffold_36:335402..337018 Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00061717 ID=TCONS_00061717|Name=TCONS_00061717|organism=Clytia hemisphaerica|type=transcript|length=1617bp|location=Sequence derived from alignment at scaffold_36:335402..337018 (Clytia hemisphaerica)
cattattcgataatatcgaaagtcaccgtcaataaGAATCTCTCGCAAAT
gacgctctattattcgatacgctccattatttgataatattgaaagccac
cGTCAACAAGTaactcataaacgacgctctactttctaatagaccttttc
ataaattaccaAGCCCCCTTGTAGATCGAATGACCACTGTGTTAACATTT
AGGAATACGCATTCAGCAAACTTAGAAATCAGTAGTCATTCTCGCACAAA
GACTCCGAACAGTTCTAGAAAAATTTGAGGAAATTGTAGTAGcaatagac
tttttcataaattacgtcacgaacatcgctTGCttcgtatttaaaaaaaa
ataccatggtgattatggtCCCTTGAgagattaaatattttttttatgaa
tatgaagtagttttaataaaatccactaGGAGTTAATCaacatggcaata
atttcaaaacgaggcaggtGTTGCTCgcaacgtaatttatgaaacggTCT
ATCAGTAGCAAAGGATTCTATTACCCAATCGCTAAATCTGAGATATTCTT
TAACACGTAAATCACTATTCTTGATAACGTACGAAACACCGATTCGCAAT
ATCTTTACGCAACTAGCAAATGTACCATTACaacaaaacattaaaataag
GTATATTTATACACGATTTTGTGCAAACTTTCATCATCATCTTTCCAGAT
TTAATTTTTACACtttcattttgatcaaaaatacaATCATACCCTATTTT
AAAAGACTTATTACTAACATATTTACAGTTTATATTACCATTTTGGTCAA
ATTATCTTTGGAGTATTCCAGAATTAGTTAACCCTACTATATGTTGAGAA
TGTGTAAGTCGGTGTTTTTTTAGAATGTACCTGATGGACTTTTCACAGAT
CTTTAAAATAATCTTTTTCGCGATATCTTCTTTGATGTTAGGAATTTTCG
GACCTTATTTTCAGAGAAATGACGTATTTTTTTTCCACGAGGATTCCAAT
GATATAAGTTTCGAAGTAATTTGGGACGAAATATTCcagaaaatcaagat
tttcggaTTTTTACTATAGTAGTTTTTTTAAACGGTTTTATCATCTAAAC
TCTTCGGAAATCTACTGTTGATACCATaaactttgaaatttaaatttaag
gAGTAGAAAAGGATGATGAATTCCACAATTTTCGATTTCGGGTGACATGA
AAAGTGGAATATTTTATCCTATGTCTCTCTTTCGGTAAATATATTGCTAT
TTTCTGAAAGATACACTCTTTACTATTACACTCATGTAATTTTCATCCTC
AAAATAATATCCATtagtttttaaaacattctttcGGACAACCCgttttt
tatcaataattttggaaaatctcaTCCTTTTCTACTCCTTTCATCATATT
GCTTACATTTTCTAATAACTTATATGGTACACTATTTGAGagtactaggt
cacagtgtggatctaaaccacactgaaacgaccgccttccatcacgcgtA
GTCACGCTCGcaaaagagcgcgcgcacattattaacgcctataaatgtca
tctccagtacattttagattattcattgaaaacagattacaatatagtca
tttttcatgtctcgatt
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00061717-exon-scaffold_36-1491911889:335402..337018 | TCONS_00061717-exon-scaffold_36-1491911889:335402..337018 | Clytia hemisphaerica | exon |
| TCONS_00061717-exon-scaffold_36-1510915933:335402..337018 | TCONS_00061717-exon-scaffold_36-1510915933:335402..337018 | Clytia hemisphaerica | exon |
| TCONS_00061717-exon-scaffold_36-1575043694:335402..337018 | TCONS_00061717-exon-scaffold_36-1575043694:335402..337018 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_36 | supercontig | scaffold_36:335402..337018 . |
Blast
The following BLAST results are available for this feature:
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