TCONS_00061727 (transcript) - C. hemisphaerica

Overview
NameTCONS_00061727
Unique NameTCONS_00061727
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length657

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00061727 ID=TCONS_00061727|Name=TCONS_00061727|organism=Clytia hemisphaerica|type=transcript|length=657bp
ccgTAATCTACTAGAAAAATTGAGGCCGTCAAACGTAAAGGAAAAAGAAC
TCCAAATTGTGAGTATGGACATTGAAGAGAACAAAGACACTGACAGAaga
attcaattgacattggttGAAACGAGGTCACCAATCCATGCTCGGCATTT
TGCCATACTTGCACTagatataaaaacaaactgtattttgaagattttga
cgACGGGTACAAAAGTGACGAAAACAAATGTAATATAAACCGCAAGGGGA
GACCCGACGAGATGAAGGTTGAAGGCACAATGCAATCCTTTTTCGACCAG
CAATTGGTGACGAACACGCCAGCATtagaaacaatagaattcatcatttt
catttttgataacGAAACAACAATCCAGAAACGAGAGGAAAAGAAGAATC
TTATATTTATATAGGGACATCATCTCTTTCGTATTTTTGATTGAACTTTA
TGTGTATTTTTGACGTGCATTTTATTTCATAGTTCAAATACTACGCCACT
GTCACtttgaaatcagaaaattaCATCACAAGTGTTACTTGCAGTTGTGG
TCTACAAAAAGCTCTTGAAACTGCGGCCAACGATTCTCAATGGGTTGGAA
TCAAGTGTTGTCATATTTGACTTCTTAAAGAAAAAGTTCGTAAAAGGTAG
GAAATTT
Run BLAST on NCBI

transcript from alignment at scaffold_36:554028..554684

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00061727 ID=TCONS_00061727|Name=TCONS_00061727|organism=Clytia hemisphaerica|type=transcript|length=657bp|location=Sequence derived from alignment at scaffold_36:554028..554684 (Clytia hemisphaerica)
AAATTTCCTACCTTTTACGAACTTTTTCTTTAAGAAGTCAAATATGACAA
CACTTGATTCCAACCCATTGAGAATCGTTGGCCGCAGTTTCAAGAGCTTT
TTGTAGACCACAACTGCAAGTAACACTTGTGATGtaattttctgatttca
aaGTGACAGTGGCGTAGTATTTGAACTATGAAATAAAATGCACGTCAAAA
ATACACATAAAGTTCAATCAAAAATACGAAAGAGATGATGTCCCTATATA
AATATAAGATTCTTCTTTTCCTCTCGTTTCTGGATTGTTGTTTCgttatc
aaaaatgaaaatgatgaattctattgtttctaATGCTGGCGTGTTCGTCA
CCAATTGCTGGTCGAAAAAGGATTGCATTGTGCCTTCAACCTTCATCTCG
TCGGGTCTCCCCTTGCGGTTTATATTACATTTGTTTTCGTCACTTTTGTA
CCCGTcgtcaaaatcttcaaaatacagtttgtttttatatctAGTGCAAG
TATGGCAAAATGCCGAGCATGGATTGGTGACCTCGTTTCaaccaatgtca
attgaattctTCTGTCAGTGTCTTTGTTCTCTTCAATGTCCATACTCACA
ATTTGGAGTTCTTTTTCCTTTACGTTTGACGGCCTCAATTTTTCTAGTAG
ATTAcgg
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_038717XLOC_038717Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00061727-exon-scaffold_36-1491911889:554028..554684TCONS_00061727-exon-scaffold_36-1491911889:554028..554684Clytia hemisphaericaexon
TCONS_00061727-exon-scaffold_36-1510915933:554028..554684TCONS_00061727-exon-scaffold_36-1510915933:554028..554684Clytia hemisphaericaexon
TCONS_00061727-exon-scaffold_36-1575043694:554028..554684TCONS_00061727-exon-scaffold_36-1575043694:554028..554684Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_36supercontigscaffold_36:554028..554684 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.0791914	0.231672	0.179329	0.0877228	1.60191	0.50634	0.610878	0.571897	0.333665	0.495958	0	0.158223	0.421342	0.164088	0.089935	0.48257	0.475589	0.182799	0.420911	0.528544	0.612534	0.896318	0.363197	0.330199	0.170049	0.758821	0.977284	0.579435	0.263689	0.35821
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00061727 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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