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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00061776 ID=TCONS_00061776|Name=TCONS_00061776|organism=Clytia hemisphaerica|type=transcript|length=698bp
agtactggTCCGTTCCGCTCTTTCTTTACTTTATATAAATATAAGCACAA
TTGAATAAATTACAATATTTTGTTATCGACAGAGAAAGCATTGGAACTCA
CCGACAGCGCCCGTGGCAAACATCACTTGTCTGACTTCCTGCCGCCTGAT
GAATTGGAAAAGTTTTTAGAGAAAGTCAAGGCGGTCAAAGAAGGGCGCGA
GGCGGATTTTTCGGATTACGCCAAATACAAGATTAAGGAGGAGAATGTTG
GTTACCAGATGTTGATGAAAGCTGGTTGGCAAGAAGGATCTGGACTCGGC
TCCAAAGGCGAAGGAATAACTGCACCTATCAATAAAGGGAAGACATCGTT
CGACAATGGAGGTATCGGAACAGAGAAAGTTGCAGAAGTCAAGAAAGAGG
ACGATGATTTTGAGGTTTATCGAAAACGAATGATGCTGGCGTATAAATTC
CGTCCCAACCCTCTGAACAATCCCCGCCGACCGTACTAcgaatgatgaaa
atgatatatGTTCATGAAAGTCTACTACATTCTATTGTATTATTAATCTT
CAtacaaataaaatatattctagTCATTCGATATCCAATTTCAAATACCT
ATTATTCATTGTTCTTGGTCATGGCGTTCGTAATCTAGATTTAGATGTTT
AAAGTGAGCAACAAATGGTTAAGGGGTTCGCCGACTTGATGGTCTTAT Run BLAST on NCBI transcript from alignment at scaffold_360:5250..8320+ Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00061776 ID=TCONS_00061776|Name=TCONS_00061776|organism=Clytia hemisphaerica|type=transcript|length=3071bp|location=Sequence derived from alignment at scaffold_360:5250..8320+ (Clytia hemisphaerica)
agtactggTCCGTTCCGCTCTTTCTTTACTTTATATAAATATAAGCACAA
TTGAATAAATTACAATATTTTGTTATCGACAGAGAAAGCATTGGAACTCA
CCGACAGCGCCCGTGGCAAACATCACTTGTCTGACTTCCTGCCGCCTGAT
GAATTGGAAAAGTTTTTAGAGAAAGTCAAGGCGGTCAAAGAAGGGCGCGA
GGCGGATTTTTCGGATTACGCCAAATACAAGATTAAGGAGGAGAATGTTG
GTTACCAGATGTTGATGAAAGCTGGTTGGCAAGAAGGATCTGGACTCGGC
TCCAAAGGCGAAGGAATAACTGCACCTATCAATAAGTAAgtgtttttaga
taaaaaaatttaaaagagccAGAAAGATACATGGGGTTTTAGTAGTAAAG
GcaagtaataaaaaaaaattgatgaaacttGTTCTATGGTCAAGAGCTCT
ACAGCAGTAGAGTCCTCCATAACTCGATCTTCAGGGAGGGAGGAAATCGT
TCGAGTTAGGAGGACACAGTAGttgaaaaggtttttaaaaaggtttttaa
ataAGCGAAACTGTGAAAAAGCAGTACATTTTCCATTGTGTTATGCTTCG
ATGATTATAGACCGGGCTTTAAGGAGAGTATTGAACATATCGCATCCTTC
ATTTATAAATGTAAAATCTCATTGGCAGTTTTTGAAAGTatgtaacattt
ttttcttctaaattaCCAGAGGGAAGACATCGTTCGACAATGGAGGTATC
GGAACAGAGAAAGTTGCAGAAGTCAAGAAAGAGGACGATGATTTTGAGGT
TTATCGAAAACGAATGATGCTGGCGTATAAATTCCGTCCCAACCCTCTGG
TTAGTATCTTTACAGTGTTAACAGCTCTTCCGTCTATGATGGACTTCCGC
TTCAGCGAGGTACCttaaaagggaagaaattttggcggaaagaaagtTTG
ACGGATTTGATAGATTTTGCCGAAATCAACCatattaagttcccgccaaa
atttaacttttctaccatccgccaaatttaagtttTCTCATATTTCGTTC
GATTTTtcattaccttaagggaactattttttgcgggaactaatttttgc
ggttcgcagttcaagatttaatatttaatatttgctatttgcgggaactt
aattttgcggatttctcacttgaaagaaaattagatcTGGTTTAGTCGGC
CCACTTTtagccctgcctattctaattgctaattaaagttggcataaagt
ggatcgaaagtgggctgtctaaagtgaaATGTTATGTAAAGTCGACATGG
TGCCCTCTTTTGATTCGCGTCGAGTGGTTTTGCCGATCATAATCAAGAAA
GTAGGCAGAAAGCGGGCTCTCTTTATACAGCCGTTTTTCGATCCACTTTT
AGCCAACTTTTGTACGATTTCTTGTAAAAGTACACGAAATTACTACGAAT
AAGACTATATTTCCCCAAAAGAAATCGCAAAAGAATTACAGGCTAAAATG
GGAAACCAAAAAGTAAAACACAGCGGGGATTTCCATGGAAAGTAGATTGT
CCGTACCTCCATTGGAGTATCTGGACAAATCATCTTTACTGATCACCATA
TCATGGTCAGTGTCCAATTCCCAGAATTTGCAATAGATGACGTAAAAATG
TTCGTAAGAGAAGAAATCCACAACCTGTTTAAGAGAAAGGAAATTGGGTT
AGTTAGTTCTCCAATGCAATTATCATTTCTAATACCTAATGGACGAAAAC
AAAGTAGCcgttttttcagtttttccccTTGTGGAAGGTGGGATTACGGG
GATCAAATACGTTACAATTAGGTGCCTAAGATACAAGGGTAGGGATATTG
AATATCCAAAATTACCGAGGTGGCCTCATTAGACACCCTTGAGAAAACTT
TCATTAGTTATACTATGTAAAACACATCACTTGAATTGTAATACAGTTAA
AATTCTCAGCAACTTGCTTCACTTGATATAGATCGACGAGAGAGGATAAT
TATTCCGCAGCTGAGTCTACcatgtttgtttacttttatcGCGGTCACAC
GCACCATAAAACCGGacataaaatattttgcgcATAGAACTTCGAGCTCG
CAACCAATGACGCTATACTATTGTTTCGCAAAAGTCGGCAAAGAGTTGGC
CGTCTAAAGTCAAACAAAGACAGCCCACTTTCGATCCACTTTATGCCAAC
TCtagcaattagaataggcagggctaAAAGTGGGCCGACTAAACCAGAGC
TTAGAGCCGTACTGTGAATTATTCGACCTTTGTTTTtcgcatttgaaaaa
ttttgcgtaaacttaattttacggtttgggcctaaatccgcaaaaaccgc
aaaatttagttcccgcaaaaattagttcccttaaggtatataaggcccta
ttttcaacattttcaccctgattttttttaactgaaacTTGAGCTCATag
tctgccaaattaaattccctctaaaaaaactttttgcgcCATCCGCCAAA
CtaaattcccgctaaatttTCTTCCCTAAAGGCACAAAAAAGAAGGTTTT
CTGCGAAAGAATTTAGCAGAATTCAGTAGAATATTGAAAAATCTGCAATC
ATTTGTCGTGATGAAattttgctttgaccactgatcTTTACAAACATGAT
AACCCTCAAAGCTGTTGCTTATTACGGGTCTCTTATTACCCCCTCCCCAT
ATTCAATtgttttctggaagagcccattccgAATTATTATAAACCTGAGA
CTTGAGAATATGCTGTTCTCCGActatttattttccttttagACTTAATG
GAtttcaaataatgtttttcttCCTTGATCTCTTACAGAACAATCCCCGC
CGACCGTACTAcgaatgatgaaaatgatatatGTTCATGAAAGTCTACTA
CATTCTATTGTATTATTAATCTTCAtacaaataaaatatattctagTCAT
TCGATATCCAATTTCAAATACCTATTATTCATTGTTCTTGGTCATGGCGT
TCGTAATCTAGATTTAGATGTTTAAAGTGAGCAACAAATGGTTAAGGGGT
TCGCCGACTTGATGGTCTTAT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00061776-exon-scaffold_360-1491911889:5250..5584 | TCONS_00061776-exon-scaffold_360-1491911889:5250..5584 | Clytia hemisphaerica | exon |
| TCONS_00061776-exon-scaffold_360-1510915933:5250..5584 | TCONS_00061776-exon-scaffold_360-1510915933:5250..5584 | Clytia hemisphaerica | exon |
| TCONS_00061776-exon-scaffold_360-1575043694:5250..5584 | TCONS_00061776-exon-scaffold_360-1575043694:5250..5584 | Clytia hemisphaerica | exon |
| TCONS_00061776-exon-scaffold_360-1491911889:5969..6098 | TCONS_00061776-exon-scaffold_360-1491911889:5969..6098 | Clytia hemisphaerica | exon |
| TCONS_00061776-exon-scaffold_360-1510915933:5969..6098 | TCONS_00061776-exon-scaffold_360-1510915933:5969..6098 | Clytia hemisphaerica | exon |
| TCONS_00061776-exon-scaffold_360-1575043694:5969..6098 | TCONS_00061776-exon-scaffold_360-1575043694:5969..6098 | Clytia hemisphaerica | exon |
| TCONS_00061776-exon-scaffold_360-1491911889:8088..8320 | TCONS_00061776-exon-scaffold_360-1491911889:8088..8320 | Clytia hemisphaerica | exon |
| TCONS_00061776-exon-scaffold_360-1510915933:8088..8320 | TCONS_00061776-exon-scaffold_360-1510915933:8088..8320 | Clytia hemisphaerica | exon |
| TCONS_00061776-exon-scaffold_360-1575043694:8088..8320 | TCONS_00061776-exon-scaffold_360-1575043694:8088..8320 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_360 | supercontig | scaffold_360:5250..8320 + |
Blast
BLAST of TCONS_00061776 vs. Swiss-Prot (Human)
Match: SUGP1 (SURP and G-patch domain-containing protein 1 OS=Homo sapiens GN=SUGP1 PE=1 SV=2) HSP 1 Score: 168.703 bits (426), Expect = 4.636e-48 Identity = 88/138 (63.77%), Postives = 111/138 (80.43%), Query Frame = 1
Query: 76 STEKALELTDSARGKHHLSDFLPPDELEKFLEKVKAVKEGREADFSDYAKYKIKEENVGYQMLMKAGWQEGSGLGSKGEGITAPINKGKTSFDNGGIGTEKVAEVKKEDDDFEVYRKRMMLAYKFXXXXXXXXXXXYY 489
+ E A +LT RGKH + DFLPPDELEKF+E KA+KEGRE D+S+Y ++K+ EN+GYQMLMK GW+EG GLGS+G+GI P+NKG T+ D G G ++ AE+ KEDD++E +RKRMMLAY+FRPNPLNNPRRPYY
Sbjct: 508 TREWAEQLTKMGRGKHFIGDFLPPDELEKFMETFKALKEGREPDYSEYKEFKLTVENIGYQMLMKMGWKEGEGLGSEGQGIKNPVNKGTTTVDGAGFGIDRPAELSKEDDEYEAFRKRMMLAYRFRPNPLNNPRRPYY 645
The following BLAST results are available for this feature:
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