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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00061793 ID=TCONS_00061793|Name=TCONS_00061793|organism=Clytia hemisphaerica|type=transcript|length=2262bp
GCGACCTCTCTTGTTGTACTTAGTGAACGAGAGACTTTTCAAGTTATAAA
TATTCAGACATCAAAACAAATGGTTGTTCAACCAATGGCATTTAGTTCAA
TCGAAGCCGCCCATCAGAAGGGTGAGGGCGGGAACATGATAAATGACATC
CTTCAAAAGATACAACAAAGCAGCAAAGAAACTTGTCTATGGGGAAAACC
CTGCCTCGAAGAGAAGCGAACGGATTGTAGCGAAACAGTTGATAAACAAA
CAGTGCTGAAAAATATCGAAGCCAAAGACAGTTTTCATTTTGATGACTTT
TGGGAAGAATTAGCCTTACTTGATAACGAGGCTAGTGTAGATGATGACGT
CAACAATAATAATTTCATCGATCAAGGTTTATATTCGATGTGTCTAGAGC
CTAACGATGAGTTACCAATAAAAACCGAAAAACGTCGAGGAACGAGACTT
GTTCGCCGACAATCTTCGGTAGATAGTGGAATCGTCGTTCGCACACCGAG
TGAAAGTTATCAAGATCGATTAGCGCTTGTCAAGTCCCGAGTTAAACGAT
GCAAAACAACAGATAATACCCTGTCTACATTACAAAGATCAAATTCGCTT
CCTAACCTGAAGGATATAGACTTGAATAAATTTCAAACGATCAAATTTAA
AGACTTTGAAGCAtacaaaaaagaacaacaagATAGTAAAATAGCTGCTG
AGTCAGCGAAAAGACATTCAGAAGCGAGAAAGAAACATAAAGACTTATTC
AGTATTCGAAATTACACTCGTGGAAAATACCGTAAAACAAAACTCTCAGA
ATTGATCACCAGGAATAATACGTTCTCGATGGGTGAAGGGCGTATGCCGC
CACATAAATTGAATGGGCGACCTCTATTTGAAGACTCGCTTGAAGAGAAC
TATGTGTTATCGTTTGATATTGACTCTACAGATACGAAAGGCGATACTTG
TTTACATCACGCTTCCAGTATCGGCGACGTCGACACAGTTCGATATCTCT
TGAAAGAGGGCGGAAATGTGTGGcgtaaaaacaataacaaactaCTCCCT
ATGGAGCTATCTCATGATTTTAAAACAGCAAAACTTTTATCCCATGCAAC
TATCTTTTACACGGAACCAGAAAAACAGAGACATGGTTGTAATAATATTT
CGTCGACCGTCAAATTAGCATTTGATTTGTAAATATGGTTAAGATTTAAA
AGTCTTTAATACTTCGTAGAttcttttttattaatttaagtTTGTTAGCC
AGAGCTGTGGAAGGATTTATTCGAGATTTAAGGTATAATTATAAGCGGTA
GGAAATGTATAATTCAATCAAACTTTGATTAGTTGTAattggtacacaac
gttgtttgaatgtctATCGAACGTCCAAATACCATTAGATGATTTTTGAA
ATAGTCTAGTATTATAACGGTCTAATCCTCCTACTGGTCTATATAGACTA
AAGGCTATGAGNACCTCTATTTGAAGACTCGCTTGAAGAGAACTATGTGT
TATCGTTTGATATTGACTCTACAGATACGAAAGGCGATACTTGTTTACAT
CACGCTTCCAGTATCGGCGACGTCGACACAGTTCGATATCTCTTGAAAGA
GGGCGGAAATGTGTGGcgtaaaaacaataacaaactaCTCCCTATGGAGC
TATCTCATGATTTTAAAACAGCAAAACTTTTATCCCATGCAACTATCTTT
TACACGGAACCAGAAAAACAGAGACATGGTTGTAATAATATTTCGTCGAC
CGTCAAATTAGCATTTGATTTGTAAATATGGTTAAGATTTAAAAGTCTTT
AATACTTCGTAGAttcttttttattaatttaagtTTGTTAGCCAGAGCTG
TGGAAGGATTTATTCGAGATTTAAGGTATAATTATAAGCGGTAGGAAATG
TATAATTCAATCAAACTTTGATTAGTTGTAattggtacacaacgttgttt
gaatgtctATCGAACGTCCAAATACCATTAGATGATTTTTGAAATAGTCT
AGTATTATAACGGTCTAATCCTCCTACTGGTCTATATAGACTAAAGGCTA
TGAGATCATTTTCCGGTTAAACTACCGGGTTAGACAAGAACTTTTTCTcc
cttgaaaaattcaaaatagtttGACCgcctcaattttaaaataactttat
tttttactttaataactttaaattttattaaattttgtatATATTGTAAA
AATTTTCAGTATAATGTCgtaaaattattttctattCTTGGGAATTACAA
TAAAGATTACAG Run BLAST on NCBI transcript from alignment at scaffold_360:180272..183602+ Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00061793 ID=TCONS_00061793|Name=TCONS_00061793|organism=Clytia hemisphaerica|type=transcript|length=3331bp|location=Sequence derived from alignment at scaffold_360:180272..183602+ (Clytia hemisphaerica)
GCGACCTCTCTTGTTGTACTTAGTGAACGAGAGACTTTTCAAGTTATAAA
TGtaagtttttcatcaaaatattttacttaCGTTTTTGCGTAGGGGCGTA
GATGaattaaaaataacttttcaaGAGCAAGGATGAAGCTCGGAGGAATA
CTGTAGGCATATTTAGAAGTTTCGATCGTCATTACATTCTATTTTTTGCG
CTGATTTGAGTGGGCATGATGTCCCCTATAATAGATTGCGAgtaaaattt
acgtttttcttcttttctcttttctctaTAACGTCGCAATGACTCTAGAC
AGCAGGGGTTTAgctttgtttttggtaggctGGTGAATCAAAAATTTACT
CTAGTGGTTTTTAGATTCTAGGCCGGCGAATTCTTAGCAAACCCAAAGCA
AAACgtgtattgattagcgtaaaCATGAAGCGGCGAACCGAACTTTTCAA
ACggcgaattgtaatttttttcgtgccttggacCGGCGAAATTCGCCGTT
TGCTGGGCCTAAATAAGACCACTATAGATTTGAAGAAGTTTCCATGTTTA
CTTTTGCTGCAAGGTATACGTAAGAAGCTAATTCTAGATTTTGATGCTTT
TGGCTACATTAGTATTACACGAAACATATTATTAGTAATCGTAATTTTCA
CAAATTACGGCTTTTTGGTATTATAATGTAATTTTAATGAGTAATCTAAG
TTTTTAAACTTTAATCTGTAAATTCTGTCAATTGAGGTTTTGTGTCATTT
TTATATAGCACAGATTCTAACGTCATCTAAAATCTTATAATCTTGCGCGT
GATTTCTGTGGGTTTATAAAGATTATAGACTTTTGTTTGTGTGCGTGAcg
tattgatgacgtcagcaaatttCTACAAACTTGAACAATGCCTTTTTTGT
CTGATCTTGGGTTTTAAGTTAAATCATCTCACCTAGAATTTATTAGTTGT
CTTTTAAGTCGCTGATAGTTAAACACGTGTAGTTGTGTAGTTCAGCCATC
TTCTCAAGCTCCCAAATAACATTGATATCAGTTCTTGTTGACTTAATGTA
GTATCTAGATTTTCCTTTtaacaattcaaatttatcTTCGAAATGAAATC
TTACTTTATTTCTTTTCCAGATTCAGACATCAAAACAAATGGTTGTTCAA
CCAATGGCATTTAGTTCAATCGAAGCCGCCCATCAGAAGGGTGAGGGCGG
GAACATGATAAATGACATCCTTCAAAAGATACAACAAAGCAGCAAAGAAA
CTTGTCTATGGGGAAAACCCTGCCTCGAAGAGAAGCGAACGGATTGTAGC
GAAACAGTTGATAAACAAACAGTGCTGAAAAATATCGAAGCCAAAGACAG
TTTTCATTTTGATGACTTTTGGGAAGAATTAGCCTTACTTGATAACGAGG
CTAGTGTAGATGATGACGTCAACAATAATAATTTCATCGATCAAGGTTTA
TATTCGATGTGTCTAGAGCCTAACGATGAGTTACCAATAAAAACCGAAAA
ACGTCGAGGAACGAGACTTGTTCGCCGACAATCTTCGGTAGATAGTGGAA
TCGTCGTTCGCACACCGAGTGAAAGTTATCAAGATCGATTAGCGCTTGTC
AAGTCCCGAGTTAAACGATGCAAAACAACAGATAATACCCTGTCTACATT
ACAAAGATCAAATTCGCTTCCTAACCTGAAGGATATAGACTTGAATAAAT
TTCAAACGATCAAATTTAAAGACTTTGAAGCAtacaaaaaagaacaacaa
gATAGTAAAATAGCTGCTGAGTCAGCGAAAAGACATTCAGAAGCGAGAAA
GAAACATAAAGACTTATTCAGTATTCGAAATTACACTCGTGGAAAATACC
GTAAAACAAAACTCTCAGAATTGATCACCAGGAATAATACGTTCTCGATG
GGTGAAGGGCGTATGCCGCCACATAAATTGAATGGGCGACCTCTATTTGA
AGACTCGCTTGAAGAGAACTATGTGTTATCGTTTGATATTGACTCTACAG
ATACGAAAGGCGATACTTGTTTACATCACGCTTCCAGTATCGGCGACGTC
GACACAGTTCGATATCTCTTGAAAGAGGGCGGAAATGTGTGGcgtaaaaa
caataacaaactaCTCCCTATGGAGCTATCTCATGATTTTAAAACAGCAA
AACTTTTATCCCATGCAACTATCTTTTACACGGAACCAGAAAAACAGAGA
CATGGTTGTAATAATATTTCGTCGACCGTCAAATTAGCATTTGATTTGTA
AATATGGTTAAGATTTAAAAGTCTTTAATACTTCGTAGAttcttttttat
taatttaagtTTGTTAGCCAGAGCTGTGGAAGGATTTATTCGAGATTTAA
GGTATAATTATAAGCGGTAGGAAATGTATAATTCAATCAAACTTTGATTA
GTTGTAattggtacacaacgttgtttgaatgtctATCGAACGTCCAAATA
CCATTAGATGATTTTTGAAATAGTCTAGTATTATAACGGTCTAATCCTCC
TACTGGTCTATATAGACTAAAGGCTATGAGNACCTCTATTTGAAGACTCG
CTTGAAGAGAACTATGTGTTATCGTTTGATATTGACTCTACAGATACGAA
AGGCGATACTTGTTTACATCACGCTTCCAGTATCGGCGACGTCGACACAG
TTCGATATCTCTTGAAAGAGGGCGGAAATGTGTGGcgtaaaaacaataac
aaactaCTCCCTATGGAGCTATCTCATGATTTTAAAACAGCAAAACTTTT
ATCCCATGCAACTATCTTTTACACGGAACCAGAAAAACAGAGACATGGTT
GTAATAATATTTCGTCGACCGTCAAATTAGCATTTGATTTGTAAATATGG
TTAAGATTTAAAAGTCTTTAATACTTCGTAGAttcttttttattaattta
agtTTGTTAGCCAGAGCTGTGGAAGGATTTATTCGAGATTTAAGGTATAA
TTATAAGCGGTAGGAAATGTATAATTCAATCAAACTTTGATTAGTTGTAa
ttggtacacaacgttgtttgaatgtctATCGAACGTCCAAATACCATTAG
ATGATTTTTGAAATAGTCTAGTATTATAACGGTCTAATCCTCCTACTGGT
CTATATAGACTAAAGGCTATGAGATCATTTTCCGGTTAAACTACCGGGTT
AGACAAGAACTTTTTCTcccttgaaaaattcaaaatagtttGACCgcctc
aattttaaaataactttattttttactttaataactttaaattttattaa
attttgtatATATTGTAAAAATTTTCAGTATAATGTCgtaaaattatttt
ctattCTTGGGAATTACAATAAAGATTACAG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00061793-exon-scaffold_360-1491911889:180272..180322 | TCONS_00061793-exon-scaffold_360-1491911889:180272..180322 | Clytia hemisphaerica | exon |
| TCONS_00061793-exon-scaffold_360-1510915933:180272..180322 | TCONS_00061793-exon-scaffold_360-1510915933:180272..180322 | Clytia hemisphaerica | exon |
| TCONS_00061793-exon-scaffold_360-1575043694:180272..180322 | TCONS_00061793-exon-scaffold_360-1575043694:180272..180322 | Clytia hemisphaerica | exon |
| TCONS_00061793-exon-scaffold_360-1491911889:181392..183602 | TCONS_00061793-exon-scaffold_360-1491911889:181392..183602 | Clytia hemisphaerica | exon |
| TCONS_00061793-exon-scaffold_360-1510915933:181392..183602 | TCONS_00061793-exon-scaffold_360-1510915933:181392..183602 | Clytia hemisphaerica | exon |
| TCONS_00061793-exon-scaffold_360-1575043694:181392..183602 | TCONS_00061793-exon-scaffold_360-1575043694:181392..183602 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_360 | supercontig | scaffold_360:180272..183602 + |
Blast
The following BLAST results are available for this feature:
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