TCONS_00061797 (transcript) - C. hemisphaerica

Overview
NameTCONS_00061797
Unique NameTCONS_00061797
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length602

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00061797 ID=TCONS_00061797|Name=TCONS_00061797|organism=Clytia hemisphaerica|type=transcript|length=602bp
CCTGGTTCTTTGAGTAAAATAGATCTCAATCGCTTTCTTCACTCTTGAGG
TTGAATCAAGGTTGATAAACGTCTTTaaacatttcttcattttttataag
ctcGATAAGACGTCGTAATAAGACGAGACCAACGTTCAGTTTTCTCTATT
CAGGAAAAATTCCTAGAGTAATCAGTGCACTACTTTTAATAGCAGCCTAA
TAAAACCTCCCGTTTCCTGTTCTTCCCCTCGATGAAAGACTGGTTCTAGG
TCAGAGATCTCTGCCACTGAATCAAGGGATGGGGAAGTTGATGTTCAAAT
TATcgaccctttttacgccggctctTATTGGCGATATTTTAGAGTTCGTG
GCCTAACGGACCGGCGTTAAAAAGGCCGACGTAAAAAGAGCCAAAATCAT
ACATTTTAAACCTAAAAGCGGTGTTTctttttttgaaccattttttcGCA
ATCAAAGTGGCTTTCTGAACAAATTCAAGGTGGAAATTACCGAAATTTTT
GCCTCGTATCCAAAACTTAATGTAAATAAGTGAATTTCGACGATAAAAAT
TTTACGCATTTTCTTACTCGTAGACgtcattttgatgaaatattctgtca
ta
Run BLAST on NCBI

transcript from alignment at scaffold_360:115266..115963-

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00061797 ID=TCONS_00061797|Name=TCONS_00061797|organism=Clytia hemisphaerica|type=transcript|length=698bp|location=Sequence derived from alignment at scaffold_360:115266..115963- (Clytia hemisphaerica)
CCTGGTTCTTTGAGTAAAATAGATCTCAATCGCTTTCTTCACTCTTGAGG
TTGAATCAAGGTTGATAAACGTCTTTAAACATTTCTTCATTTTTTATAAG
CTCGATAAGACGTCGTAATAAGACGAGACCAACGTTCAGTTTTCTCTATT
CAGGAAAAATTCCTAGAGTAATCAGTGCACTACTTTTAATAGCAGCCTAA
TAAAACCTCCCGTTTCCTGTTCTTCCCCTCGATGAAAGACTGGTTCTAGG
TCAGAGATCTCTGCCACTGAATCAAGGGATGGGGAAGTTGATGTTCAAAT
TATCGACCCTTTTTACGCCGGCTCTTATTGGCGATATTTTAGAGTTCGTG
GCCTAACGGACCGGCGTTAAAAAGGCCGACGTAAAAAGAGCCAAAATCAT
ACATTTTAAACCTAAAAGCGGTGTTTCTTTTTTTGAACCATTTTTTCGCA
ATCAAAGTGGCTTTCTGAACAAATTCAAGGTGGAAGCACAGATATCTGTA
AAGCCCGAAGGGCTAGATTTGCGACTTTTATCAAAAAGTGAAGCTCATCT
TTGGAAGGNTCTGAACAAATTCAAGGTGGAAATTACCGAAATTTTTGCCT
CGTATCCAAAACTTAATGTAAATAAGTGAATTTCGACGATAAAAATTTTA
CGCATTTTCTTACTCGTAGACGTCATTTTGATGAAATATTCTGTCATA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_038773XLOC_038773Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00061797-exon-scaffold_360-1575043694:115485..115963TCONS_00061797-exon-scaffold_360-1575043694:115485..115963Clytia hemisphaericaexon
TCONS_00061797-exon-scaffold_360-1575043694:115266..115388TCONS_00061797-exon-scaffold_360-1575043694:115266..115388Clytia hemisphaericaexon
TCONS_00061797-exon-scaffold_360-1510915933:115485..115963TCONS_00061797-exon-scaffold_360-1510915933:115485..115963Clytia hemisphaericaexon
TCONS_00061797-exon-scaffold_360-1510915933:115266..115388TCONS_00061797-exon-scaffold_360-1510915933:115266..115388Clytia hemisphaericaexon
TCONS_00061797-exon-scaffold_360-1491911889:115485..115963TCONS_00061797-exon-scaffold_360-1491911889:115485..115963Clytia hemisphaericaexon
TCONS_00061797-exon-scaffold_360-1491911889:115266..115388TCONS_00061797-exon-scaffold_360-1491911889:115266..115388Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_360supercontigscaffold_360:115266..115963 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.541645	0.616221	0.919917	0.499997	1.33914	0.481002	0.812432	0.869244	0.228217	0.753823	0.274379	0.541099	0.840539	1.74582	0.512606	0.550105	0.948759	0.486223	0.191927	0.301256	0.174564	0.766317	0	0.470512	0.775387	0.95152	0.371351	0	0.300592	0.20417
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00061797 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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