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Overview
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00061819 ID=TCONS_00061819|Name=TCONS_00061819|organism=Clytia hemisphaerica|type=transcript|length=2279bpRun BLAST on NCBI protein sequence of TCONS_00061819-protein >TCONS_00061819-protein ID=TCONS_00061819-protein|Name=TCONS_00061819-protein|organism=Clytia hemisphaerica|type=polypeptide|length=709bp MKIPDLKSNGDEENQNNGRMEVTSNQHKEEKASFSFTPQQAHIFGGQSLFRun BLAST on NCBI transcript from alignment at scaffold_360:269728..291637- Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.>TCONS_00061819 ID=TCONS_00061819|Name=TCONS_00061819|organism=Clytia hemisphaerica|type=transcript|length=21910bp|location=Sequence derived from alignment at scaffold_360:269728..291637- (Clytia hemisphaerica) Coding sequence (CDS) from alignment at scaffold_360:269728..291637- >TCONS_00061819 ID=TCONS_00061819|Name=TCONS_00061819|organism=Clytia hemisphaerica|type=CDS|length=23397bp|location=Sequence derived from alignment at scaffold_360:269728..291637- (Clytia hemisphaerica) Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Position
The following features are aligned
Expression
Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Values :
GrOo_1 GrOo_2 FGOo_1 FGOo_2 EG_1 EG_2 P1_1 P1_2 P2_1 P2_2 P3_1 P3_2 PoPr_1 PoPr_2 St_1 St_2 GO_1 GO_2 PH_1 PH_2 BMF_1 BMF_2 MMF_1 MMF_2 M_1 M_2 GEC_1 GEC_2 GEN_1 GEN_2
Annotated Terms
The following terms have been associated with this transcript:
Blast
BLAST of TCONS_00061819 vs. Swiss-Prot (Human)
Match: AKP13 (A-kinase anchor protein 13 OS=Homo sapiens GN=AKAP13 PE=1 SV=2) HSP 1 Score: 87.4261 bits (215), Expect = 2.264e-17 Identity = 65/223 (29.15%), Postives = 104/223 (46.64%), Query Frame = 2
Query: 251 FSFTPQQAHIFGGQSLFLSFANLDAPLSCEAFYYVTFQGSKLRHVTSAKILNPFTLQAVIPDHDQSEEVKLIVSQLRTDNTKQDLAEDLFTFTSDSSEFLAQQLVTNALIPETLKHLEDVYKSLLNVSLVEKRALDARLSLSFRHLTRNEPWCVANDDSDNTDDC--WNLLHICAKYSLCQLAELLLTKAGSKVALQRMNDQGWTPLEIAAQTNHKRMIEILS 913
PQQA ++G + + A D + +Y+ F GS LRH TS + ++ TL+ + P HD E VK+ + + +AE+ F F D + AQ L T+A + L + +S V +LD +L L+FRHL W V D D L+H + L +L LL K G + AL N +G TP+ +A + + ++ ++L+
Sbjct: 1 MKLNPQQAPLYGDCVVTVLLAEEDKAED-DVVFYLVFLGSTLRHCTSTRKVSSDTLETIAPGHDCCETVKVQLCASKEGLPVFVVAEEDFHFVQDEAYDAAQFLATSAGNQQALNFTRFLDQSGPPSGDV--NSLDKKLVLAFRHLKLPTEWNVLGTDQSLHDAGPRETLMHFAVRLGLLRLTWFLLQKPGGRGALSIHNQEGATPVSLALERGYHKLHQLLT 220 The following BLAST results are available for this feature:
BLAST of TCONS_00061819 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens)) Total hits: 1
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