TCONS_00061840 (transcript) - C. hemisphaerica

Overview
NameTCONS_00061840
Unique NameTCONS_00061840
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length342

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00061840 ID=TCONS_00061840|Name=TCONS_00061840|organism=Clytia hemisphaerica|type=transcript|length=342bp
TCCAAAACTTAATGTAAATAAGTGAATTTCAACGATAAAAATTTTACGCA
TTTTCTTACTCGTAGAtgtcattttgatgaaatattctgtcataattttc
tgttttgaagCCTAAATTAAATTGCAGTTTTTGCAGGTTTTGGTGTAATT
TGCAGCCCTTATTGGCGTAGGCCCAAAAATGGGCAGTGGCGTAAAAAGGA
CCGATGAGGTAATATGAATTGTCACTGCACTGAATAAAACGAGATATAAG
TCTTTCATGAGAGAGAGGTACATCCCTGTGTCACGATCTGGTGGGACCAC
CCTACTGTTGAAAATAGTTGCCGTAAAATCGTCCCCGCTAAG
Run BLAST on NCBI

transcript from alignment at scaffold_360:114704..115045

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00061840 ID=TCONS_00061840|Name=TCONS_00061840|organism=Clytia hemisphaerica|type=transcript|length=342bp|location=Sequence derived from alignment at scaffold_360:114704..115045 (Clytia hemisphaerica)
CTTAGCGGGGACGATTTTACGGCAACTATTTTCAACAGTAGGGTGGTCCC
ACCAGATCGTGACACAGGGATGTACCTCTCTCTCATGAAAGACTTATATC
TCGTTTTATTCAGTGCAGTGACAATTCATATTACCTCATCGGTCCTTTTT
ACGCCACTGCCCATTTTTGGGCCTACGCCAATAAGGGCTGCAAATTACAC
CAAAACCTGCAAAAACTGCAATTTAATTTAGGcttcaaaacagaaaatta
tgacagaatatttcatcaaaatgacaTCTACGAGTAAGAAAATGCGTAAA
ATTTTTATCGTTGAAATTCACTTATTTACATTAAGTTTTGGA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_038793XLOC_038793Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00061840-exon-scaffold_360-1491911889:114704..115045TCONS_00061840-exon-scaffold_360-1491911889:114704..115045Clytia hemisphaericaexon
TCONS_00061840-exon-scaffold_360-1510915933:114704..115045TCONS_00061840-exon-scaffold_360-1510915933:114704..115045Clytia hemisphaericaexon
TCONS_00061840-exon-scaffold_360-1575043694:114704..115045TCONS_00061840-exon-scaffold_360-1575043694:114704..115045Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_360supercontigscaffold_360:114704..115045 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Sort Descending | Sort Ascending | Only Non-Zero Values | Tile/Chart | Reset | Show/Hide Values

Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.266749	0.520244	0.302026	0.295486	2.51808	0.56852	0.342947	1.28425	0.224784	0	1.08101	0.888265	1.59665	1.28967	0.302937	0.162549	1.40173	0.410494	0.567119	0	0.257908	0.75479	0	0.278061	0.572792	0.255602	0	0	0	0
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00061840 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
back to top