|
Overview
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00061859 ID=TCONS_00061859|Name=TCONS_00061859|organism=Clytia hemisphaerica|type=transcript|length=3450bpRun BLAST on NCBI protein sequence of TCONS_00061859-protein >TCONS_00061859-protein ID=TCONS_00061859-protein|Name=TCONS_00061859-protein|organism=Clytia hemisphaerica|type=polypeptide|length=565bp NISVVSRKQSDWFLSSQNREKSLNKVIMATCVKPSSTNTKEDSHQMSERLRun BLAST on NCBI transcript from alignment at scaffold_361:126746..136651+ Legend: exonCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.>TCONS_00061859 ID=TCONS_00061859|Name=TCONS_00061859|organism=Clytia hemisphaerica|type=transcript|length=9906bp|location=Sequence derived from alignment at scaffold_361:126746..136651+ (Clytia hemisphaerica) Coding sequence (CDS) from alignment at scaffold_361:126746..136651+ >TCONS_00061859 ID=TCONS_00061859|Name=TCONS_00061859|organism=Clytia hemisphaerica|type=CDS|length=25470bp|location=Sequence derived from alignment at scaffold_361:126746..136651+ (Clytia hemisphaerica) Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Position
The following features are aligned
Expression
Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Values :
GrOo_1 GrOo_2 FGOo_1 FGOo_2 EG_1 EG_2 P1_1 P1_2 P2_1 P2_2 P3_1 P3_2 PoPr_1 PoPr_2 St_1 St_2 GO_1 GO_2 PH_1 PH_2 BMF_1 BMF_2 MMF_1 MMF_2 M_1 M_2 GEC_1 GEC_2 GEN_1 GEN_2
Annotated Terms
The following terms have been associated with this transcript:
Blast
BLAST of TCONS_00061859 vs. Swiss-Prot (Human)
Match: SPART (Spartin OS=Homo sapiens GN=SPART PE=1 SV=1) HSP 1 Score: 201.06 bits (510), Expect = 1.123e-53 Identity = 139/428 (32.48%), Postives = 213/428 (49.77%), Query Frame = 1
Query: 469 EDLWQDAKELVNIKEGVKLFHVDDKGVVSPWTSTNVVLQIFQILK---DSITDGPDAFLKCGEWMYPLEPGKSPVLK-TQNTYMFPDVNIKDEVAIEGDDLSHISC-VGIVLSDLVSDPLRQRFERILKCYGDFRI----------------------SDKPAESFQXXXXXXXXXXXXXXXNAER----TISPTSESTLAIVSTATKEISDQLAEQKAWSDKISVGINIGSQWISWGLLKGAEYTSVLMEKGATSLQQRIKPENKPTVIDPEISHNIRQLHQATGSVVQVSSFLVTSLGALTVNLGKKLAPIVAQQGEKLLPIKYKPSNSESSQKTIEEVKKVGVAGLQGLSIMFLSLEQAGKNLYQTLSKATVQTVQHKYGEEAGDVTHDAMGAAGNALKTVWNVNQLGPKAVAKRALKDTGKAML 1659
E L DA EL+ I GV++F V+ G VS S L+I + L D++ + P FL+ +W+YPL P +SPVLK T YMFPD L C VG+VLS + + R+ FE +L+ D R+ SD+ E+ K + +R + + E L+ + ++ E WS+K++ I G+ W+SWGL+KGAE T ++KGA+ L++RI+PE KP + P ++ + QATG +VS FLV + + +GK+LAP V + G KL+P K + + ++ V + +QG S ++ LE A K + +S TVQTV++KYG AG+ TH A+ +A N T +N+N +G KA+ K+ TG +L
Sbjct: 212 ETLGLDADELILIPNGVQIFFVNPAGEVSA-PSYPGYLRIVRFLDNSLDTVLNRPPGFLQVCDWLYPLVPDRSPVLKCTAGAYMFPDTM-----------LQAAGCFVGVVLSSELPEDDRELFEDLLRQMSDLRLQANWNRAEEENEFQIPGRTRPSSDQLKEASGTDVKQLDQGNKDVRHKGKRGKRAKDTSSEEVNLSHIVPCEPVPEEKPKELPEWSEKVAHNILSGASWVSWGLVKGAEITGKAIQKGASKLRERIQPEEKPVEVSPAVTKGLYIAKQATGGAAKVSQFLVDGVCTVANCVGKELAPHVKKHGSKLVPESLK--KDKDGKSPLDGAMVVAASSVQGFSTVWQGLECAAKCIVNNVSAETVQTVRYKYGYNAGEATHHAVDSAVNVGVTAYNINNIGIKAMVKKTATQTGHTLL 625 The following BLAST results are available for this feature:
BLAST of TCONS_00061859 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens)) Total hits: 1
|
Copyright © 2024, MARIMBA.