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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00061906 ID=TCONS_00061906|Name=TCONS_00061906|organism=Clytia hemisphaerica|type=transcript|length=1908bp
Ggtttacaatttttaaacattgaattttgaatggggatgaaatcaaagtc
attttcccagcagggctgaaattctagggtatttttccaccggggacgaa
ttttttgccaaattttccagtgggtctgtgacacaggggtgttctaGCGA
GAAAACAAACCATGTTTCTTTCTGTCAGCGATGTAAGTAGTGAAGCTGTC
GGCAATGTCACTTATTTGAAGAAAGAGCAGAGAAGGAGCAGAAAAAACAT
TAAGACGGTTCGTAAACACTGCAGACCAAAAATAGGGCCGTTTTTAGTCC
GAGTCTTGTACAAAAGATTTCtcctaaaattttaaacattttcttttcgA
TTAATAGGAGCTCGATGAGAATGGCGAATAAATACGGAAGAAATGcgaaa
ctaattttatttttacttgcCGAATCAACGAAAAGACAATCACACATTAG
CCGCTTGTTAGACATAATGCATGGCTTGACCACAATCTATAACGTTCGTt
tggtaaatgaaaaaaatttgtatgCTACTTACATACAAGAATCTTGTGAA
AAATTAGTCATTGTTTTGTTCAATGAGGATGGTCTGGGAAATAGACAGTT
TCGTGAATGTTTACGAACATCCCTAGCAGCAAAATTGGACATTATTGGTG
TTCTTGACGAAGGTGTATCACGAGAAAGAGTCCTCAGCTTTTTCTCTTTC
AACAATAAGCGAAAACAAATGCTGGAAGAAATTGTCACAAGTGCATTCTG
TTTCCAGAAAGACTGTCTGTTCAAAGCAACACCATTAGTTGATCGCATAC
AGCAATTATGCAGACCGGTATCTTCCCGGATAAGCGATCGCCCGCGTTTA
CCAAAGATAACCGAACCCAACGTCAATCTGGAAGCTTGtttaaaatcaaa
gaaagtGATTTTGAAACCCATGTCTCGAGCACCTCCACGAACTTTATTTT
CATGCACCTTCACCAGAAAAACTGAACTCCCACTCCTGAAGCCTCAAAAA
TCATCCGCAGGGCAAATCAGAAGTCTTCCAAGACCGAGGAATATCCAAAA
CACAAATGTCATTTATCCAAAGATTGAAATCTCACAAGGATTCCCCACTC
AAGTTATAAAGAAACGTACAAGCTCAACATCATCAGCTCGTAGTAAAATA
CCAATCAAGCAATTGACATGTCCGATAATTGAAATCAGCCAAGATGACGA
TTCGGACGATATTCCGGACACTCCAGATGCGATCACTGAAAAGCAAGACC
GGTTGCCATGGACAATTACCACGACAACAACGCTAGATGATCCAGGAGCA
AACAGAGATGAGTTTAATCTTGAAATTGAAGGCGATTGTGAGCGAAGACT
TTCGTTTGACTACGTCTCGAAAACGTATATCGTGTTTGAtccaaagaaga
agaaaacccTACACGTCAATTTCCCTAATGGTTGCAGCATTTTGAGGCGT
GAAAGTTTACATGATATCCTGTCCAACGTTTCGTCACGCAGAAATTCATT
CTTGTGGAGCAACAGTGCAAGTTCTTCAACAGATGAAATCAATCTTGAAT
CTAAGTTCGATTCGGTCAATATCTTGGACTCACCAATTCCCTCGCCAACA
ATGAGAAGAAGCAATGTGATTTATCAAAATCCACTTCCTGTTTACCCAGA
TGAAATTTGTTTTCCACCGGTGGAAAAATTCCCATGTGACACTTTACAGA
TGAGAAGGCCGTCAGTGTTTGACGTCTTATTGCattaaattaaaaacatt
ttttggtcaattttgaaaattttcttaaatttcatgaattttctttatag
taagtagtaagtaacCATTTCTAGAAaagttttatcaatttttttgtctg
aaaaccaaaactttttgattgtatttaagaatttttttttaccaataaTA
AATTGTTG Run BLAST on NCBI transcript from alignment at scaffold_361:782286..784193+ Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00061906 ID=TCONS_00061906|Name=TCONS_00061906|organism=Clytia hemisphaerica|type=transcript|length=1908bp|location=Sequence derived from alignment at scaffold_361:782286..784193+ (Clytia hemisphaerica)
Ggtttacaatttttaaacattgaattttgaatggggatgaaatcaaagtc
attttcccagcagggctgaaattctagggtatttttccaccggggacgaa
ttttttgccaaattttccagtgggtctgtgacacaggggtgttctaGCGA
GAAAACAAACCATGTTTCTTTCTGTCAGCGATGTAAGTAGTGAAGCTGTC
GGCAATGTCACTTATTTGAAGAAAGAGCAGAGAAGGAGCAGAAAAAACAT
TAAGACGGTTCGTAAACACTGCAGACCAAAAATAGGGCCGTTTTTAGTCC
GAGTCTTGTACAAAAGATTTCtcctaaaattttaaacattttcttttcgA
TTAATAGGAGCTCGATGAGAATGGCGAATAAATACGGAAGAAATGcgaaa
ctaattttatttttacttgcCGAATCAACGAAAAGACAATCACACATTAG
CCGCTTGTTAGACATAATGCATGGCTTGACCACAATCTATAACGTTCGTt
tggtaaatgaaaaaaatttgtatgCTACTTACATACAAGAATCTTGTGAA
AAATTAGTCATTGTTTTGTTCAATGAGGATGGTCTGGGAAATAGACAGTT
TCGTGAATGTTTACGAACATCCCTAGCAGCAAAATTGGACATTATTGGTG
TTCTTGACGAAGGTGTATCACGAGAAAGAGTCCTCAGCTTTTTCTCTTTC
AACAATAAGCGAAAACAAATGCTGGAAGAAATTGTCACAAGTGCATTCTG
TTTCCAGAAAGACTGTCTGTTCAAAGCAACACCATTAGTTGATCGCATAC
AGCAATTATGCAGACCGGTATCTTCCCGGATAAGCGATCGCCCGCGTTTA
CCAAAGATAACCGAACCCAACGTCAATCTGGAAGCTTGtttaaaatcaaa
gaaagtGATTTTGAAACCCATGTCTCGAGCACCTCCACGAACTTTATTTT
CATGCACCTTCACCAGAAAAACTGAACTCCCACTCCTGAAGCCTCAAAAA
TCATCCGCAGGGCAAATCAGAAGTCTTCCAAGACCGAGGAATATCCAAAA
CACAAATGTCATTTATCCAAAGATTGAAATCTCACAAGGATTCCCCACTC
AAGTTATAAAGAAACGTACAAGCTCAACATCATCAGCTCGTAGTAAAATA
CCAATCAAGCAATTGACATGTCCGATAATTGAAATCAGCCAAGATGACGA
TTCGGACGATATTCCGGACACTCCAGATGCGATCACTGAAAAGCAAGACC
GGTTGCCATGGACAATTACCACGACAACAACGCTAGATGATCCAGGAGCA
AACAGAGATGAGTTTAATCTTGAAATTGAAGGCGATTGTGAGCGAAGACT
TTCGTTTGACTACGTCTCGAAAACGTATATCGTGTTTGAtccaaagaaga
agaaaacccTACACGTCAATTTCCCTAATGGTTGCAGCATTTTGAGGCGT
GAAAGTTTACATGATATCCTGTCCAACGTTTCGTCACGCAGAAATTCATT
CTTGTGGAGCAACAGTGCAAGTTCTTCAACAGATGAAATCAATCTTGAAT
CTAAGTTCGATTCGGTCAATATCTTGGACTCACCAATTCCCTCGCCAACA
ATGAGAAGAAGCAATGTGATTTATCAAAATCCACTTCCTGTTTACCCAGA
TGAAATTTGTTTTCCACCGGTGGAAAAATTCCCATGTGACACTTTACAGA
TGAGAAGGCCGTCAGTGTTTGACGTCTTATTGCattaaattaaaaacatt
ttttggtcaattttgaaaattttcttaaatttcatgaattttctttatag
taagtagtaagtaacCATTTCTAGAAaagttttatcaatttttttgtctg
aaaaccaaaactttttgattgtatttaagaatttttttttaccaataaTA
AATTGTTG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00061906-exon-scaffold_361-1491911889:782286..784193 | TCONS_00061906-exon-scaffold_361-1491911889:782286..784193 | Clytia hemisphaerica | exon |
| TCONS_00061906-exon-scaffold_361-1510915933:782286..784193 | TCONS_00061906-exon-scaffold_361-1510915933:782286..784193 | Clytia hemisphaerica | exon |
| TCONS_00061906-exon-scaffold_361-1575043694:782286..784193 | TCONS_00061906-exon-scaffold_361-1575043694:782286..784193 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_361 | supercontig | scaffold_361:782286..784193 + |
Blast
The following BLAST results are available for this feature:
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