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Overview
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00061913 ID=TCONS_00061913|Name=TCONS_00061913|organism=Clytia hemisphaerica|type=transcript|length=3609bpRun BLAST on NCBI protein sequence of TCONS_00061913-protein >TCONS_00061913-protein ID=TCONS_00061913-protein|Name=TCONS_00061913-protein|organism=Clytia hemisphaerica|type=polypeptide|length=582bp MRLYIRYLFIAILFILLCWSIFSWKKASNSSQLIERVAEKLHHKSKPVTIRun BLAST on NCBI transcript from alignment at scaffold_361:947812..965837+ Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.>TCONS_00061913 ID=TCONS_00061913|Name=TCONS_00061913|organism=Clytia hemisphaerica|type=transcript|length=18026bp|location=Sequence derived from alignment at scaffold_361:947812..965837+ (Clytia hemisphaerica) Coding sequence (CDS) from alignment at scaffold_361:947812..965837+ >TCONS_00061913 ID=TCONS_00061913|Name=TCONS_00061913|organism=Clytia hemisphaerica|type=CDS|length=15741bp|location=Sequence derived from alignment at scaffold_361:947812..965837+ (Clytia hemisphaerica) Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Position
The following features are aligned
Expression
Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Values :
GrOo_1 GrOo_2 FGOo_1 FGOo_2 EG_1 EG_2 P1_1 P1_2 P2_1 P2_2 P3_1 P3_2 PoPr_1 PoPr_2 St_1 St_2 GO_1 GO_2 PH_1 PH_2 BMF_1 BMF_2 MMF_1 MMF_2 M_1 M_2 GEC_1 GEC_2 GEN_1 GEN_2
Annotated Terms
The following terms have been associated with this transcript:
Blast
BLAST of TCONS_00061913 vs. Swiss-Prot (Human)
Match: GALT6 (Polypeptide N-acetylgalactosaminyltransferase 6 OS=Homo sapiens GN=GALNT6 PE=2 SV=2) HSP 1 Score: 422.55 bits (1085), Expect = 1.081e-132 Identity = 221/495 (44.65%), Postives = 314/495 (63.43%), Query Frame = 1
Query: 382 YGFNELSSSKISLERAI-PDNRVDACFNVKYP--SDLPTASVIIIFYNEAWSTLLRTIQTVITRSPPQFLYEIILVDDASLKAPDEPYPHLAQKLEDYVDRMPKLKLIRSPKRVGLTQARLIGADNAQGDVLVFLDSHCEATYGWLEPMLARLKENRKLAVVPDIEVIAWKNFQYSK--ERGS-YNRGIFSWELMFNWGPLPEREVKRRKNDAYPIKSPTMAGGLFAMDRRYFFESGAYDRKLIYWGGENVEMSFRLWMCGDGIEIIPCSRVGHVFRERAPYKSPDGST--DHNSIRVAEVWMDEFKEIFYSFRANLKP------EMGGDVTERKKLRDQLQCKSFKWYLQNIIPELELPDKYPYGRGDIKNLGTNSCLDTLAQNNAGGRPG-LYPCHKMGTNQFFIFTKRKEIWHDGLCVDLDSHADTAKVKMWSCHKQAGN------QEWIHQRIGEGGLIQHSVHNRCLEGLGDQIVVRQCDKNNRKQLWVF 1803
+ FN +S +ISL+R++ PD R C + K+ L T SVII+F+NEAWSTLLRT+ +V+ +P L EIILVDDAS + HL +KLE YV ++ ++++R +R GL ARL+GA AQ +VL FLD+HCE +GWLEP+LAR+ E++ + V PDI I F+++K +RG ++RG F W L F W LP E +RRK++ YPIKSPT AGGLF++ + YF G YD ++ WGGENVEMSFR+W CG +EIIPCS VGHVFR ++P+ P G++ N +R+AEVWMD +K+IFY R NL+ + GD++ER +LR+QL C +F WYL N+ PE+ +PD P G IKNLGTN CLD + +NN GG+P +Y CH +G NQ+F +T ++++ H+ + L H + + SCH N +EW + + LI++S CL + + C+ ++ QLW+F
Sbjct: 140 HCFNAFASDRISLQRSLGPDTRPPECVDQKFRRCPPLATTSVIIVFHNEAWSTLLRTVYSVLHTTPAILLKEIILVDDASTEE------HLKEKLEQYVKQLQVVRVVRQEERKGLITARLLGASVAQAEVLTFLDAHCECFHGWLEPLLARIAEDKTVVVSPDIVTIDLNTFEFAKPVQRGRVHSRGNFDWSLTFGWETLPPHEKQRRKDETYPIKSPTFAGGLFSISKSYFEHIGTYDNQMEIWGGENVEMSFRVWQCGGQLEIIPCSVVGHVFRTKSPHTFPKGTSVIARNQVRLAEVWMDSYKKIFY--RRNLQAAKMAQEKSFGDISERLQLREQLHCHNFSWYLHNVYPEMFVPDLTPTFYGAIKNLGTNQCLD-VGENNRGGKPLIMYSCHGLGGNQYFEYTTQRDLRHN-IAKQLCLHVSKGALGLGSCHFTGKNSQVPKDEEW---ELAQDQLIRNSGSGTCLTSQDKKPAMAPCNPSDPHQLWLF 621 The following BLAST results are available for this feature:
BLAST of TCONS_00061913 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens)) Total hits: 1
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