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Overview
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00061925 ID=TCONS_00061925|Name=TCONS_00061925|organism=Clytia hemisphaerica|type=transcript|length=1208bpRun BLAST on NCBI protein sequence of TCONS_00061925-protein >TCONS_00061925-protein ID=TCONS_00061925-protein|Name=TCONS_00061925-protein|organism=Clytia hemisphaerica|type=polypeptide|length=335bp MSELNSLKNDGQNLSQLFKKGWKDFLEIEDSSEPSNSDSYQKKTKLCIETRun BLAST on NCBI transcript from alignment at scaffold_361:1174442..1179513+ Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.>TCONS_00061925 ID=TCONS_00061925|Name=TCONS_00061925|organism=Clytia hemisphaerica|type=transcript|length=5072bp|location=Sequence derived from alignment at scaffold_361:1174442..1179513+ (Clytia hemisphaerica) Coding sequence (CDS) from alignment at scaffold_361:1174442..1179513+ >TCONS_00061925 ID=TCONS_00061925|Name=TCONS_00061925|organism=Clytia hemisphaerica|type=CDS|length=12096bp|location=Sequence derived from alignment at scaffold_361:1174442..1179513+ (Clytia hemisphaerica) Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Position
The following features are aligned
Expression
Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Values :
GrOo_1 GrOo_2 FGOo_1 FGOo_2 EG_1 EG_2 P1_1 P1_2 P2_1 P2_2 P3_1 P3_2 PoPr_1 PoPr_2 St_1 St_2 GO_1 GO_2 PH_1 PH_2 BMF_1 BMF_2 MMF_1 MMF_2 M_1 M_2 GEC_1 GEC_2 GEN_1 GEN_2
Annotated Terms
The following terms have been associated with this transcript:
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Blast
BLAST of TCONS_00061925 vs. Swiss-Prot (Human)
Match: IGBP1 (Immunoglobulin-binding protein 1 OS=Homo sapiens GN=IGBP1 PE=1 SV=1) HSP 1 Score: 146.362 bits (368), Expect = 1.554e-39 Identity = 101/330 (30.61%), Postives = 184/330 (55.76%), Query Frame = 3
Query: 72 LSQLFKKGWKDFLEIEDSSEPSNSDSYQKKTKLCIETFIKCTHMVNILGLFSSNEHIDEISTETISFLLLPAFLGELSLKLISDERK-SSVKNALVYFRSFLKHCQDYQITNKKLSHYIEDESEEEKKPDTDTIRNKI-----REEKISRFKENKLLENSIKTIQDRLEKDEISVDESATREHYMNWIKLWINRAVENVDSIKSEMDILEHMEKLRMGXXXXXXXXXXXXXXXILITREMLQNKVFGAGYRNLPTMSQEEYFEKELREGKIVQD--YNXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXAREWDEWKDTHRRGEGNKERHG 1037
L +LF+ G + E+E ++EP+ S Q+K ++ K M++ L LFS NE ++EI++ + +LL+PAF G L++K ++ ++ ++ A +F ++L C Y + +L + + +E + + + R+ KI R+K+ K LE+ + ++ +E + D+ RE+Y+ ++ WI+ ++E ++SI E+ IL + R +E P+KP ++TR M Q KVFGAGY +LPTM+ +++E+ + G + + + + +EE++E +E DE+ L +AREWD+WKDTH RG GN++ G
Sbjct: 12 LPELFETGRQLLDEVEVATEPAGSRIVQEKVFKGLDLLEKAAEMLSQLDLFSRNEDLEEIASTDLKYLLVPAFQGALTMKQVNPSKRLDHLQRAREHFINYLTQCHCYHVAEFELPKTMNNSAENHTANSSMAYPSLVAMASQRQAKIQRYKQKKELEHRLSAMKSAVESGQ--ADDERVREYYLLHLQRWIDISLEEIESIDQEIKILRERDSSREASTSNSSRQERPPVKPFILTRNMAQAKVFGAGYPSLPTMTVSDWYEQHRKYGALPDQGIAKAAPEEFRKAAQQQEEQEEKEEEDDEQTLHRAREWDDWKDTHPRGYGNRQNMG 339 The following BLAST results are available for this feature:
BLAST of TCONS_00061925 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens)) Total hits: 1
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