TCONS_00061952 (transcript) - C. hemisphaerica

Overview
NameTCONS_00061952
Unique NameTCONS_00061952
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length3273

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00061952 ID=TCONS_00061952|Name=TCONS_00061952|organism=Clytia hemisphaerica|type=transcript|length=3273bp
CAGATTCTGGAAGATCAAAAAATATGCGAAGAAACTCATTTGGTGAGACG
TTAGAAGGCGTGATCAGACGACAAACAGTTAGCAGTCAGCGGTCACCACG
AAACAAATGCCATTCAGTACACGTTCGGTCACCTTCTAGCTTGTCTTCCG
AGGAAGATAAATCTGCTAGAAGTCCTGTTGTTTCGCCAAGGCTACcttcc
aaaaataaaaagattAATCACCAACGTTCTGATTCCAATCAATCTTTTGA
GATCATTGACATGAACCAAGTTGTACAACTTGAAAACAATTCTCTTCCAC
AGGGTCCAAAAGCAGAAAAAGCTGGTCAATTGATGCGTCGAAAGGTTGTG
GAAGGAAGGAAACAAATAAAGAAACCAATATGGACACCCATTTACATTTG
CAAATATGACAGCAATCTTGTTTTCTACAAAGACCAAAAGACTGCATCGC
CTAAACCTGGATTTCCGACGGGCAAACCGGAGTCAAGCCTGGATTTACAC
GGTGCAACGTTGGACCATATCTCAAAGGAGAAAGTCAAGGGAAAGAAATA
TGTCTTTCAGATCGCATCGTACGGTGGTCAGAACGTTCATCAATTTGTGG
CAGACAATCAACTGGAAATGGGTGAATGGATCGTCTGCATACAAGCTACT
ATACATAAACTGGAAGAAGAAGAGCCTCTGCCTCCGCATCCGCTACAACA
TCAAATCTCCAATGGAGGGGGCGGAGAGCGCCTCGCCTCACCCACCAGCA
CCATCGCTCCACCCAATGATTTATCACCGCCCCCTTCGACTTCAAGTAAC
AAAGCTGCCTCCCCGATGATGCCGAAAAAACTTTTAGGATCGGAAAGCAA
AAGCGGTGGCTTCAAAGGTTTCAGTCGCCGACTGTCGAAACGAGTTACGG
GAGGTACCGACGAGGAGAAAGATAAAACGAGGATCAAAGACAAgctgaaa
aaatatttatccaaaCGACCTTCGTTCAACGAACTCGAAAGTAAAGGAAT
TATCGCAGattttgttttTGGCTATCCGCTCGAGAAACTTTGCGAACGTG
AAGATAATTTGGTACCTCGATTCATTGTTCAAATTGTTCATGAGGTCGAA
AAGAGAGGACTTGATGTGGATGGCATATATCGTGTCTCTGGTAATTTATC
GTCAGTCAATAAACTACGTGGACTAATCGACAATGgtGAGATGCCGGACT
ACTCTCAACCAGAATGGAATGACATTCACTTACTGACTGGttgtttgaaa
ttgtatttTCGCGAACTCCCCGAACCTCTTCTACCCTTTCACCTGTTCGA
TCGATTTGTTGGTGCTATGAaaAGCCCTTTCAAGCCTGAGAAGCTGAAAC
TGATGAGGGAAGTCGTCTCAGAGCTAAAAGCTGAACGCAAAGAGACTTTA
AATCTGCTACTCACGCATTTTAACAGGGTGATGTCTATGTCTTCGAAGAA
TCGAATGCATTCACAAAACATTGCTATTGTTTTCGGACCGACGCTGATGT
GGCCTGAAACGGACTCTATAAATGTTGCTATGACGAcggtttttcaaaat
caagtcATTGAATTTCTTGTGCAAGAGTGGAACGATGTTTATACGATGTA
ACACAAATTGCTTGGTGCTAATGAAATGGTTTTGTTACGAATTACTTCGT
TTGTTTTAAAGTGAGGCTAATTTGTATGGGAGTGAGGCTGAGTTGTTTAT
TTCAGATGAATGGTTCCTGAAGACTTCCGAGGTCTTGTGTATGCCAACGA
ACTGGTTTGCCACCGAACCTGGATCTTAATCAGTTAGAGTATTGACACAA
CTGGACATCATTTtccccccaataattttggGTGTGGTCTATGACAACGT
GTGAATGACATCAATGCGAACATTTCTGGTGCAGGTGACAGAACCTTGCT
GCAACTGCTAGATGCTTGCCTTGTTCAATAAATAATGAATAAATGTTGTA
TTGATTTCGCTTTTCCAATAACACAATAACTCGCTCACCAACAGCCTGAG
TTTGATTTCTCACTGTTTTTAAGAACGGTCGATGAAGTGACAGAAAAATG
AtgactttcaaaaaacaatgataaagaaTGAATGAtgttgaatgaatgaa
tgaatgaaaataaTACAGCAAGTTTAGAATTTGATAATTAAAGAAatagc
aataatttcaaaatttttaatataaCGTCTATATAAATATGTCTAGAATT
TttagttaatttttttattactacTGATGGTCGGTTTTTGCTACATGTGA
ATTTATTATATTATTGTTATTGATGGATTTATATGAAAATTATCTTGTCC
AATGTTTTTAGGGGAGGGCACCTGTTTTTCTGAGATGTTCCTTTTTTTCT
GCGTTTTAAGttacttttttatgttttttaaggTTTATTTATTACTGTCA
CTTTCGCCAACCGATACCTACAGCGTTTCAAAAGAAGCCTGTGTTTTCTC
GTTGATTTCCTCTGTACAAAGTcaactgttttcaaattttaaactttttt
ttttcgttcagttctttttttttttgttcgttctCTTATTGgacattttt
ttatgtttttttgtactttttgctATTTGTTATTTCACAACGACATAATT
caatttcgaaaataatttgTTCAATCATAGACAAGGACAACAAATAATTC
ATTATAAAAGTAGTCCTGAAACCATTTGTTTTAGGTGTGCACTAGTTTTT
GTTATCCCTGCTACTTTTGAACAAATGTTTTAATGtaatcttaaaaagtt
ataaacctttgaaaaacctttgaaaagataattcagaggtCTTTAACTGA
CAAAAGATGATgataaatttgcgaaaaaacagagaagaaaaagaatttaa
tATCCCTTGATTCTAGAAACTTTATTTTTGGTACTAAATTACTTTGAAGC
CCTGATTTCaactaaataattatttttccctGCATTATTGCATCTAAAGT
TGCAGCCTTCAACGAGCTACCTTTTGGAGACtgtaatttttgaaacattc
attcaaaaatggcaagcaaaacaaGGATAAGTGCAAACTTAAAAGCGAAT
TGACtctagtttttaatttttgttggaatgatctttttgattttatctGC
TACCAGTGATCGAATTTCCTATTATGTAATATACTTAAATCATCCGACTA
CCAGTCGTCTACTACTAAACTTGAAACTAAAACTGTGTAAATTTTCTTGC
TTTTGCTTAATATCAAattgtttttgtataaaaaagatATAATTATCAAA
CCTAACCATTTGTTACGTCGTTT
Run BLAST on NCBI

transcript from alignment at scaffold_361:1649141..1660781+

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00061952 ID=TCONS_00061952|Name=TCONS_00061952|organism=Clytia hemisphaerica|type=transcript|length=11641bp|location=Sequence derived from alignment at scaffold_361:1649141..1660781+ (Clytia hemisphaerica)
CAGATTCTGGAAGATCAAAAAATATGCGAAGAAACTCATTTGGTGAGACG
TTAGAAGGCGTGATCAGACGACAAACAGTTAGCAGTCAGCGGTCACCACG
AAACAAATGCCATTCAGTACACGTTCGGTCACCTTCTAGCTTGTCTTCCG
AGGAAGATAAATCTGCTAGAAGTCCTGTTGTTTCGCCAAGGCTACcttcc
aaaaataaaaagattgtaAGTGAATCTTTGAATGTTTTGACTTAAATTCG
AGATAAAAAATTGTATTATATTAATTATAGAAACTCTTCTTTGAATTAAT
TAAAGTTAACCAAAGATTTAATATTAATTTAATgcacctttttttttaaa
gggttTTATTCATTGACAAATTTTATTAATGATTTCAATGCACTATTTTA
TGTTACTTTTAATTTGCTGACACTAGCACCTCACCTCACATTCTTAGAAT
CACCAACGTTCTGATTCCAATCAATCTTTTGAGATCATTGACATGAACCA
AGTTGTACAACTTGAAAACAATTCTCTTCCACAGGTATCTTATACACCAT
GCACATACATACACTCTCTAACAATATCTGGACTTTCCTTTTAAACGAAA
ACTAATTTGTTTTGTTCTCCTTTTTTATATGTACACAACTAACAATAGCT
TGTAAAATGATCCTTTAGTTTTCTGCCCGTTGTTTAAAGTATCTCATGAT
ATTCTCAGAAATAACATTTTTGATCGAGTCTTCTAATTTCTCTGATTAAC
CCGATCCTATACCCTGACAGGGGAGATTTAGATTTATATTTAAGGAAAAG
TCAACCCCAtacaaatcttttcttttcatcaGGGTCCAAAAGCAGAAAAA
GCTGGTCAATTGATGCGTCGAAAGGTTGTGGAAGGAAGGAAACAAATAAA
GAAACCAATATGGACACCCATTTACATTTGCAAATATGACAGCAATCTTG
TTTTCTACAAAGACCAAAAGACTGCATCGCCTGTATGTTTGACCGATATT
TCTTCCCAATTGGAATCCTTGTTGCTCTTTGGAAGATAGGGTTTGTTAAA
AGTAGTTAGCGAACCAATAACTTAAAACTTCGTAGGAGAGGTAAAGCAAG
TGAAGAATTTGTGAAAAACTGGGGAAAAATGAATCTGAAATGTATAAGGT
TTCAAATATGTGAGTCATGGATTGGATTTTTAGATTAATATCTTTTTGGG
CTTTTACATTTGTCATAGAAACCGTACATTTTGAGAagatagaaaatgaa
atacttcTTGCCTGACAGTACATTTTAAAAACTACCATAAAATTTCTTCC
TCACTCTTTTgagtttttacaattttatacAGAAACCTGGATTTCCGACG
GGCAAACCGGAGTCAAGCCTGGATTTACACGGTGCAACGTTGGACCATAT
CTCAAAGGAGAAAGTCAAGGGAAAGAAATATGTCTTTCAGGTAAATacat
aaagctttttaaaaatttttcttcgtAAGATGACTTATTCATTCAAGTAG
CAATTTAGTAAAAAGTTTATTTCTTAATTGGTCACATTGTGATTTATTAT
GATGTCGTCTATAAAGCTTCGTCCCACTGTGTATTGAAACAGTTATCTCA
ATCAAAACATTTCTACTTCATGTTGAGTCATTcgtaaattcaaaaaagaa
aatgtatgCCATGATTTGTATTTAATTATGTTTTGTAAtctcattgaaaa
taaatttaacacTTGAAAATACCAATCAGCTTGTCTTATGTACAATAATG
TTAACATTAAAAGTGCTGACTTGTAAGGGTTGTACTAAACAGTGGAATCT
TTTGGATATGGTAGATATCTTTTACTGCTTGATGAATACTAAAaactttc
ttcaatttttattactACTACCATAGAATTTTGtactttattcttttttt
gattaCTAATCTGAGAGAACTTTACTCAATAGAAGTTTTGTTACAAGAAA
GGATACTTCACACACCTTGAAAATACAATAATTTGATGATATATTTATTA
TTACGTATATAGATCGCATCGTACGGTGGTCAGAACGTTCATCAATTTGT
GGCAGACAATCAACTGGAAATGGGTGAATGGATCGTCTGCATACAAGCTA
CTATACATAAACTGGTAAGAACACTCTTTAAAGTCAATGTTTGATGAGCA
GAATCACCCTATTAAGTGTTTTACATAATAATAATGCATTGCAACAACCT
CCAAATCTAATGCCAGCACTTAATTTTGCCCAAATTATCCTTTTCAATTG
CACTTCGAGCTAATTTAAAAGTATTGGATCTCAAATTCAAAGTCATTGGT
CGTGACGTCATCAGCAAATTCTTTTAAGATGACGTAGTGTCATAAAATCT
CTCTTTGTTTACATGAGGTATCAACTCTATAGTAGGCTCTTTAATTTTCA
AATCCAAATGTACAAGTTCGAGCATGCAGCCAACTTAATATGGCCAAGCT
CTTTAACTATTTGACATCATGCTGTTTGTGCTCTCTGCCCACcagttatt
tcaaaattcagtttCACTATCCAAAATATGATAACTATACGATAACAGAT
AATTCACTGGACAACATTGATAAATAAGTACCTCAAGTCACTGAGAAACT
GTTTTAAGCTTAAAGCTTTCTTACCTGACATCATTGTCCACCATCTTTCT
TTGTTGTCTCCATGGCAACTTGTTACATACCATCAACAATTTTGCATTAT
ATCCTGTTCTTTTAACCATtgacatatttttattttatcttctctaaaag
taagaaaatatatCAACCCATACACTATTATACTTACTATCTTGCATGAT
ATAAAGTGGTTTTTCTTACTTTCTATAACTTTACAAAAGAATTTAGACTG
TACGACTTGTTATAATGTATAACTCTTTTGCATTTTATACCATACAAACA
AAGATACAAATGCAAGCGTTAGAGAGCTCAGTTTACAAGGTCAACATTCA
CTGCTACTTCGCCAATTTACAGTATATCTTTATACTGCATCTTTTGTGTG
TACGATGGATATTTGTGCTGGAAAAAGTACAGTTACAGTTTATAGTTATT
ATCGATATCAAAGTTGAGAGCTTTATTATTCAGTCTTGATTAAAGGCTta
catttttgatttattaGAGTCGTGTAGAAATATCTATATACTATAGAACA
TACAATGTATtggacggaggatcgagacaaaaataccattatatGCTAGT
GTTGTTGGTAACATCTCAATTAGGTTCCACTAACATTCAAGTTTTTATAT
CACTAAAAGATATCTTCGATCCCACACGACTCTATCCACGATCACATCCC
AACATATAAGGAAGGATGACAGCAGCTGACAACAATTTTTATTAAGATAG
TTTGATATCCTACTAGACACGACAGTTATTTTAATGGTTTGGCGTGGAGT
TAACAACTTGATTAAATGACTTTATAATGGGTTAACGATGTTGTCATTCT
CATTAAGAATACTACAGATTATGTTATGTTTTCATCTCTGTCAAACaact
tgttttgaattttgtgaTACTTTTCTCctcttgttttgatgttttcgtTT
TGACTTGGTTTTTGTTGTTCTTGACTTCTTTTTTTTAGAACCATGACTAT
GTTTCGACGGTTTTCGTCCTCTTTATTTTATTCCTTTTAGGGATACAGAA
TATCCTCTCCCGCTCTTCTTGTTTTTCGAGTGCAGCATATGTTTCAACTA
AAGCAGACCAATGCAATTTTTCTCACAAATAGCTACATATTCAACCCGTC
CGTCTCTGCTCTCCTTTTCCCACAAACATTAAAGTgcacaaaaataatca
aaaatggTGTGGTTTTCCAAGAACCATTCCCTAATAACTTGACGCTGACC
AATCTTAAACTCAATTCAAGGTTTAATAccaaacttattttcaatatatc
AATGTGAGTTAAGTATAAACATTGATAACTCATTAATACTGAGAACCATG
CAACATCAGCAAACTTCCATCTCCTCCTCCTCTTAATTCGAAAGTGAAAG
TTAAAAGAAATATGTCAAGTACAATTTGTCATTTAATAGTTATGCATTTA
TCAGCATTTTCCCCTGGTTTTACGTTGAATCCAACCTCTATTTGGTgtat
tcaaaaattatatgaaatgtAATGATACAGGTagtatatacattttaaaa
tatCGCAAAATTACCTGTTGACTTTTTGTGAATATAGTTTTACGCTggtt
tggaatatttttgtcgttttttgaagttaaaaaaGCTGTAGGACAATCAA
TGACAAACTAAAGTTTGGGAGCAGTTTTACTTCtactttctttttgctat
aGCCCTCAGCTCAGATTTTCTGTTTTTATGATATAATGGTTCTAACTATT
GAATCACAGAAAGTAAAGAAGCCAAACTTTGGTGTTTAAACGATAAATTA
GTTTTTGTTTGACTTCAATGTCATTTTAATGGTATCAAAATAAAAGTGAC
GATTTTCATGGAgagattagaaaaaaattcGTTGGTTTTTAAAACACGca
acaaaaacaacattaaAAACAACAGAAATATGTTAGTAGGGACCTTTCTC
TCCTCAAAACACAAGTGGATAATTTTGCTCTGTTAAAAAGCTTGTCAACT
ATAAGTTAATGTGCTGCGAATACAAGTTGTCGTcttatttgaaagctttt
gatagCTCCTGGTATATTTTTGGGGgtgatttgtttgtttgtttgttaat
GCAAAGATATGAAAGTTCAATTGTTGAAGTTCAgaagaatatcttcaaat
tcGAATGTAAGTTTCCTTTTCATCGAAACACATTTTGAAGGCTTATTCAA
TGAAAGTATGTActgttgactctctctaattcgatctttatggaaccaaa
gttgttttttttcaaattagagaaaaattcaaattttaaccaCTTTCGAG
Ggatcaatattttagttcgaattacaaaaaaattcgaataatagaggttc
gaattagagtgaGTTGATTTCAATGGAAGGATGATTTAACCCTTTGTGCG
CGCtggtttttttttaagttgaaGTGTGTCAGGTGCTATAGCCCGAACTA
GAAActaaatttcatcaaaacaaGTACATCCATACCAAATTCATGAAAAC
GTTCTACTGCATGCCCTCAATCCCTCTTCTTAAAGCTGAGTAATTCAGTT
ATAGTTCCCTTGTATGACTCAGATTTATGCATTATTAATAACCTAAAAAA
GTACCTTTTTACAGATTTTGTTACTAGTACTTTCACAGTAAGTATTTTTC
CGAAAACTTTCTAACACACAACAAAGCATAGCCATCTGCCATGCGATGCT
TACTTTAAATACCGTGGAAGCTGTCACTCTTACTCACTCTTACAAGGCAA
AAGAGACGATCAACTGAAAATGCTTTAttcgttttgtttttttaattctc
gGATGTAATGTATCTTACCAacacataactttttgaaaactaATAATGCC
AGTGGCCAATTCAAATCTCTGCGTTCTTGTTTATAACACTTTATTTTCCA
CCGAATCTGCCACGAAACGAAGATTTCTCAAGCTACCAGATTGTGATGCA
TGATACTCACAAACTTTTCCTTTCCTCGTTCTCCTTATGCAAATGATTGA
GCTTGCACTTCTTTTATTTACtttctttctttggtttttatttgaCGAAT
ATTCTCTTTTGCTTGCTTTCATCAGATTCCAAAAGTTTCTTTGACATTTG
AATGTCTTTTAAAAGAGGAGTTTACTCGATGTTATGTTTTAACAAAAACT
TCAGGTAGATATTGGTTGTTGGTTGTTTTGGATAGGTTTGTTGGTAAATT
AGAAGTTCAATCGACACTAAGACTTGTTATTTTTAGATCTAGCTCCCTAA
GGAATCTATTTTAAAAGTAGTTTTCAAACTTGAGGGCGGTGGTTTTTGCA
TGGGAGGGAGCAATAACAGTTTGACAATTTCGTATTTCTACTTGTATATC
CAATCTTCGACATACTTGATCGAGCCTTCTGTCTACTGACTAATAATCTA
ATTTAAAGTGATAGAACTAACTAAACTAAAGTTGAACCTCTGGGCTTTTA
CGTTCCTACAAGTCTAGTTTGAGCACATGTAACGATATAAACTTAGATTC
ATAAAATGGAATTGCGTCTACACTAGTGACTCTATACCAGAACATACAAA
TCaaataaagttttcaaaagaatgACTGGAGCAAAGTTTAAGATATTTTT
TGGCTTCAAGGAGGATGTTTGTGCAGATCCTGTTCTCTTGAATTGCTCTC
AAAGAATCGTGGTAAGAAGAACTCCTGATGAAATTTCTATTGGGCCGCTC
TACATTCATGACTTTTTTACCTTTCCCATGTCTAACATTCAGGCGATTAA
TTTTTCACCAAACGTGCTCTCCTAAATATGTTTTGGAGCattgtttttca
aacttactttTCCTCCTTCAAACGTTAAACTTCTGAATTTCATTGGTCGA
AAATATTTAACAGTGTTAGAAGTTGCTTCTTTTGCGAACGAAAGATCCAA
GCTCTTCGCTTTTATTCTCAACGTATTTCAACTCGTTTGTGTGCAATTTT
AAACGAAGCATGGCATCGTCGTTGCTAGGGAACATTATATCACGTGCTTA
CACATTCGTTACCATTCTCCTACAGGAAGAAGAAGAGCCTCTGCCTCCGC
ATCCGCTACAACATCAAATCTCCAATGGAGGGGGCGGAGAGCGCCTCGCC
TCACCCACCAGCACCATCGCTCCACCCAATGATTTATCACCGCCCCCTTC
GACTTCAAGTAACAAAGCTGCCTCCCCGATGATGCCGAAAAAACTTTTAG
GATCGGAAAGCAAAAGCGGTGGCTTCAAAGGTTTCAGTCGCCGACTGTCG
AAACGAGGTACAGTAAACTTATTACTTATtacttattcgaacttctaccG
TATTATTTGTCCCCAGTCCCCGTCACGGAGAAATCCTCCTAATAtgcttt
ttataattcgaatccctctataattcgaacaaataatatTCCCCGTTcca
gttcgaattagcgaggtacttctttcttattttcctttttgtgcaTCGGA
GTTTTTAAATCGGGGATTTCACAAGGGTGcggaaatcaaaatttttagaa
tatctGCCTGTTTGACAAGGAATTTTCCAGTAATGATTGCACAGTGTAGC
AAATAtgatttcatttcttttgaCATCAGTTACGGGAGGTACCGACGAGG
AGAAAGATAAAACGAGGATCAAAGACAAgctgaaaaaatatttatccaaa
CGACCTTCGTTCAACGAACTCGAAAGTAAAGGAATTATCGCAGGTAGGAA
TCATGTGAAGATCCTGTCTGTCtgcctgtctgtctgtctgtcttgTTTGC
TGGTCTACATGTAGTGACATTAAGGAGACTTTATTTGAGAGTTCTTTTTA
GCGATAAATCTCTGTAAACTTTCTTGTAGCTGACTTCTAAATTTGATGGT
ATGCCATTATCTTGCTGTTTCtgagctctagtttagacggccctcTTTTA
aggtcaatgcaatgtcttttttcaatcttttccaagcaaagattttaact
gccaactttgtgcccactttGTGCCTACTCTAATAATTAGAATAGGCtag
gcagaaagtcggccgtctaaactagagctgaGATTTTTTACtcttatatt
tttcagattttgttttTGGCTATCCGCTCGAGAAACTTTGCGAACGTGAA
GATAATTTGGTACCTCGATTCATTGTTCAAATTGTTCATGAGGTCGAAAA
GAGAGGTCAGTGAAAAAAAAgctttcagatttttcaaaagctCACCTATT
AAGTAAAGAGTCAGGAGAGTTGAACCTTTCATCAATAAAGTGTATTATCA
AAGGAAATAGTCcctcaaatttttccaaaagaattaGTCCAAAACTGAGA
GAACTGTTGTTCCTACATACAAATTAAAAGGAGCAAAATTGAAGTGATGA
ATTTGTATCATTATCATTTGTTTGTTAACAGGACTTGATGTGGATGGCAT
ATATCGTGTCTCTGGTAATTTATCGTCAGTCAATAAACTACGTGGACTAA
TCGACAATGGTATGCTTAAatcatttcttttttattattggATAACTTAC
TCCGGTGGGTTCATTGGAAGATATGCATTCTTAGAATCTTTTGCTAGAAC
CCTTTGTTTTGCATAATGTGGAAGCGTGGAAAAACTCAGTGCTACTGACA
GCGCAAGATCTTTGGCCTGATTCGgcaatacagttgactcttCATGAATC
AAACACGCACGGAGAACACAAGTTTGATCGAGTAATGGAAATGTTGAGTT
ATGGAGTAACTTAtataagacattgttaactgaagggaccggAAAACGTG
TCCAAGTTATTGAGACCCGatttaaagagactccactctAGTGCcaaata
ccgagtttatgtatgtgtgttttctgCAAcagagacggtaaggttctaat
ttgactagatcctgaccagctgaggacgacggtgaatcagcacttttacc
gtcctcgatattgcgggtcagaactgcgggttattccaaatcgcttcagt
gactttaccgtcctcaaaagtgcaaatacataaactcgctaatgtgtGTA
GCGGTAACGTTACCAAATTCTTGACATTCTAttgctcttctttttttttg
aaggtGAGATGCCGGACTACTCTCAACCAGAATGGAATGACATTCACTTA
CTGACTGGttgtttgaaattgtatttTCGCGAACTCCCCGAACCTCTTCT
ACCCTTTCACCTGTTCGATCGATTTGTTGGTGCTATGAGTAAGTCACCGA
CCTTTTCTGTTCACCAAACTATAGTCCTTCCAAACAAATAGAAGCTCAGA
GATGAGGTTGTCCCTAATTAGTTggaaatataaatttctaccatgtaaca
cccctgtctcagtgccccggtggtaccttttccctcagtggggatgaaaa
cttctatcgaaatcccaatggggatagaaaatctattgtttccagctcga
aaatttcagtggggatggttttggagtccaattttttccattcaattttc
aatggggatagaatcatAGGGCAATTTCCCAGTTGGGTTGAAAATGTAGG
CTATTTTTTCCACTGgagacgattttttggcctatttttccaccggggcg
ggggtccaccgggtctgtgacacaggggtgtcatgTAAAAAGAGTGCAGG
AACTTACAGGACTTTTCATATcgatttctttctttgtttagaaAGCCCTT
TCAAGCCTGAGAAGCTGAAACTGATGAGGGAAGTCGTCTCAGAGCTAAAA
GCTGAACGCAAAGAGACTTTAAATCTGCTACTCACGCATTTTAACAGGTA
GTGTATATTATGCTGAAGAGGTCTGTTGTGAAGGCATTAAATGTTGAAAT
GGACACGTAAAGCTAGCATTTCATTGGTTCTAAACAAGCAACCGTAGCTT
GAAGGTAGAGCATCTGGCTACGGTGTGCAAGGTCTTAGGTTCAAACCCTg
accgggtcataccaaagacttcttaaaaatggtacttgatgcctctctgc
ttgatgctcagcaattaagggaaggatcaagggtaagtggaggaatccag
agagaaagagtggcgccctcccctactttcgggtagacagctatcgaaag
agaagccttcagggtcgcctccgactgcggtcgcagattTACTTACTACT
AAACAAGcgaaatgttttattttcaatctcTAATCTCGTGTTTAAATTTA
GCCCTATCGTTGTGGAATATTAATTGAATTTGTTGTTTTTCCAGGGTGAT
GTCTATGTCTTCGAAGAATCGAATGCATTCACAAAACATTGCTATTGTTT
TCGGACCGACGCTGATGTGGCCTGAAACGGACTCTATAAATGTTGCTATG
ACGAcggtttttcaaaatcaagtcATTGAATTTCTTGTGCAAGAGTGGAA
CGATGTTTATACGATGTAACACAAATTGCTTGGTGCTAATGAAATGGTTT
TGTTACGAATTACTTCGTTTGTTTTAAAGTGAGGCTAATTTGTATGGGAG
TGAGGCTGAGTTGTTTATTTCAGATGAATGGTTCCTGAAGACTTCCGAGG
TCTTGTGTATGCCAACGAACTGGTTTGCCACCGAACCTGGATCTTAATCA
GTTAGAGTATTGACACAACTGGACATCATTTtccccccaataattttggG
TGTGGTCTATGACAACGTGTGAATGACATCAATGCGAACATTTCTGGTGC
AGGTGACAGAACCTTGCTGCAACTGCTAGATGCTTGCCTTGTTCAATAAA
TAATGAATAAATGTTGTATTGATTTCGCTTTTCCAATAACACAATAACTC
GCTCACCAACAGCCTGAGTTTGATTTCTCACTGTTTTTAAGAACGGTCGA
TGAAGTGACAGAAAAATGAtgactttcaaaaaacaatgataaagaaTGAA
TGAtgttgaatgaatgaatgaatgaaaataaTACAGCAAGTTTAGAATTT
GATAATTAAAGAAatagcaataatttcaaaatttttaatataaCGTCTAT
ATAAATATGTCTAGAATTTttagttaatttttttattactacTGATGGTC
GGTTTTTGCTACATGTGAATTTATTATATTATTGTTATTGATGGATTTAT
ATGAAAATTATCTTGTCCAATGTTTTTAGGGGAGGGCACCTGTTTTTCTG
AGATGTTCCTTTTTTTCTGCGTTTTAAGttacttttttatgttttttaag
gTTTATTTATTACTGTCACTTTCGCCAACCGATACCTACAGCGTTTCAAA
AGAAGCCTGTGTTTTCTCGTTGATTTCCTCTGTACAAAGTcaactgtttt
caaattttaaacttttttttttcgttcagttctttttttttttgttcgtt
ctCTTATTGgacatttttttatgtttttttgtactttttgctATTTGTTA
TTTCACAACGACATAATTcaatttcgaaaataatttgTTCAATCATAGAC
AAGGACAACAAATAATTCATTATAAAAGTAGTCCTGAAACCATTTGTTTT
AGGTGTGCACTAGTTTTTGTTATCCCTGCTACTTTTGAACAAATGTTTTA
ATGtaatcttaaaaagttataaacctttgaaaaacctttgaaaagataat
tcagaggtCTTTAACTGACAAAAGATGATgataaatttgcgaaaaaacag
agaagaaaaagaatttaatATCCCTTGATTCTAGAAACTTTATTTTTGGT
ACTAAATTACTTTGAAGCCCTGATTTCaactaaataattatttttccctG
CATTATTGCATCTAAAGTTGCAGCCTTCAACGAGCTACCTTTTGGAGACt
gtaatttttgaaacattcattcaaaaatggcaagcaaaacaaGGATAAGT
GCAAACTTAAAAGCGAATTGACtctagtttttaatttttgttggaatgat
ctttttgattttatctGCTACCAGTGATCGAATTTCCTATTATGTAATAT
ACTTAAATCATCCGACTACCAGTCGTCTACTACTAAACTTGAAACTAAAA
CTGTGTAAATTTTCTTGCTTTTGCTTAATATCAAattgtttttgtataaa
aaagatATAATTATCAAACCTAACCATTTGTTACGTCGTTT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_038839XLOC_038839Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00061952-exon-scaffold_361-1491911889:1649141..1649355TCONS_00061952-exon-scaffold_361-1491911889:1649141..1649355Clytia hemisphaericaexon
TCONS_00061952-exon-scaffold_361-1510915933:1649141..1649355TCONS_00061952-exon-scaffold_361-1510915933:1649141..1649355Clytia hemisphaericaexon
TCONS_00061952-exon-scaffold_361-1575043694:1649141..1649355TCONS_00061952-exon-scaffold_361-1575043694:1649141..1649355Clytia hemisphaericaexon
TCONS_00061952-exon-scaffold_361-1491911889:1649588..1649674TCONS_00061952-exon-scaffold_361-1491911889:1649588..1649674Clytia hemisphaericaexon
TCONS_00061952-exon-scaffold_361-1510915933:1649588..1649674TCONS_00061952-exon-scaffold_361-1510915933:1649588..1649674Clytia hemisphaericaexon
TCONS_00061952-exon-scaffold_361-1575043694:1649588..1649674TCONS_00061952-exon-scaffold_361-1575043694:1649588..1649674Clytia hemisphaericaexon
TCONS_00061952-exon-scaffold_361-1491911889:1649973..1650122TCONS_00061952-exon-scaffold_361-1491911889:1649973..1650122Clytia hemisphaericaexon
TCONS_00061952-exon-scaffold_361-1510915933:1649973..1650122TCONS_00061952-exon-scaffold_361-1510915933:1649973..1650122Clytia hemisphaericaexon
TCONS_00061952-exon-scaffold_361-1575043694:1649973..1650122TCONS_00061952-exon-scaffold_361-1575043694:1649973..1650122Clytia hemisphaericaexon
TCONS_00061952-exon-scaffold_361-1491911889:1650473..1650580TCONS_00061952-exon-scaffold_361-1491911889:1650473..1650580Clytia hemisphaericaexon
TCONS_00061952-exon-scaffold_361-1510915933:1650473..1650580TCONS_00061952-exon-scaffold_361-1510915933:1650473..1650580Clytia hemisphaericaexon
TCONS_00061952-exon-scaffold_361-1575043694:1650473..1650580TCONS_00061952-exon-scaffold_361-1575043694:1650473..1650580Clytia hemisphaericaexon
TCONS_00061952-exon-scaffold_361-1491911889:1651153..1651254TCONS_00061952-exon-scaffold_361-1491911889:1651153..1651254Clytia hemisphaericaexon
TCONS_00061952-exon-scaffold_361-1510915933:1651153..1651254TCONS_00061952-exon-scaffold_361-1510915933:1651153..1651254Clytia hemisphaericaexon
TCONS_00061952-exon-scaffold_361-1575043694:1651153..1651254TCONS_00061952-exon-scaffold_361-1575043694:1651153..1651254Clytia hemisphaericaexon
TCONS_00061952-exon-scaffold_361-1491911889:1655766..1655997TCONS_00061952-exon-scaffold_361-1491911889:1655766..1655997Clytia hemisphaericaexon
TCONS_00061952-exon-scaffold_361-1510915933:1655766..1655997TCONS_00061952-exon-scaffold_361-1510915933:1655766..1655997Clytia hemisphaericaexon
TCONS_00061952-exon-scaffold_361-1575043694:1655766..1655997TCONS_00061952-exon-scaffold_361-1575043694:1655766..1655997Clytia hemisphaericaexon
TCONS_00061952-exon-scaffold_361-1491911889:1656320..1656433TCONS_00061952-exon-scaffold_361-1491911889:1656320..1656433Clytia hemisphaericaexon
TCONS_00061952-exon-scaffold_361-1510915933:1656320..1656433TCONS_00061952-exon-scaffold_361-1510915933:1656320..1656433Clytia hemisphaericaexon
TCONS_00061952-exon-scaffold_361-1575043694:1656320..1656433TCONS_00061952-exon-scaffold_361-1575043694:1656320..1656433Clytia hemisphaericaexon
TCONS_00061952-exon-scaffold_361-1491911889:1656797..1656895TCONS_00061952-exon-scaffold_361-1491911889:1656797..1656895Clytia hemisphaericaexon
TCONS_00061952-exon-scaffold_361-1510915933:1656797..1656895TCONS_00061952-exon-scaffold_361-1510915933:1656797..1656895Clytia hemisphaericaexon
TCONS_00061952-exon-scaffold_361-1575043694:1656797..1656895TCONS_00061952-exon-scaffold_361-1575043694:1656797..1656895Clytia hemisphaericaexon
TCONS_00061952-exon-scaffold_361-1491911889:1657122..1657199TCONS_00061952-exon-scaffold_361-1491911889:1657122..1657199Clytia hemisphaericaexon
TCONS_00061952-exon-scaffold_361-1510915933:1657122..1657199TCONS_00061952-exon-scaffold_361-1510915933:1657122..1657199Clytia hemisphaericaexon
TCONS_00061952-exon-scaffold_361-1575043694:1657122..1657199TCONS_00061952-exon-scaffold_361-1575043694:1657122..1657199Clytia hemisphaericaexon
TCONS_00061952-exon-scaffold_361-1491911889:1657794..1657928TCONS_00061952-exon-scaffold_361-1491911889:1657794..1657928Clytia hemisphaericaexon
TCONS_00061952-exon-scaffold_361-1510915933:1657794..1657928TCONS_00061952-exon-scaffold_361-1510915933:1657794..1657928Clytia hemisphaericaexon
TCONS_00061952-exon-scaffold_361-1575043694:1657794..1657928TCONS_00061952-exon-scaffold_361-1575043694:1657794..1657928Clytia hemisphaericaexon
TCONS_00061952-exon-scaffold_361-1491911889:1658382..1658487TCONS_00061952-exon-scaffold_361-1491911889:1658382..1658487Clytia hemisphaericaexon
TCONS_00061952-exon-scaffold_361-1510915933:1658382..1658487TCONS_00061952-exon-scaffold_361-1510915933:1658382..1658487Clytia hemisphaericaexon
TCONS_00061952-exon-scaffold_361-1575043694:1658382..1658487TCONS_00061952-exon-scaffold_361-1575043694:1658382..1658487Clytia hemisphaericaexon
TCONS_00061952-exon-scaffold_361-1491911889:1658935..1660781TCONS_00061952-exon-scaffold_361-1491911889:1658935..1660781Clytia hemisphaericaexon
TCONS_00061952-exon-scaffold_361-1510915933:1658935..1660781TCONS_00061952-exon-scaffold_361-1510915933:1658935..1660781Clytia hemisphaericaexon
TCONS_00061952-exon-scaffold_361-1575043694:1658935..1660781TCONS_00061952-exon-scaffold_361-1575043694:1658935..1660781Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_361supercontigscaffold_361:1649141..1660781 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
1.65112	0.988268	0.433501	0.355138	19.3107	13.6078	18.459	23.1866	12.3128	16.5928	9.96042	10.1183	7.87782	7.86927	8.32174	11.0189	5.07921	5.32088	6.4456	6.20994	1.35182	2.247	1.995	3.6687	2.64775	3.29494	1.46519	1.39154	4.33719	3.4273
Blast
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BLAST of TCONS_00061952 vs. Swiss-Prot (Human)
Match: RHG27 (Rho GTPase-activating protein 27 OS=Homo sapiens GN=ARHGAP27 PE=1 SV=3)

HSP 1 Score: 205.297 bits (521), Expect = 2.449e-54
Identity = 148/418 (35.41%), Postives = 220/418 (52.63%), Query Frame = 3 
Query:  360 KQIKKPIWTPIYICKYDSNLVFYKDQKTASP----KPG-FPTGKPESSLDLHGATLDHISKEKVKGKKYVFQIASYGGQNVHQFVADNQLEMGEWIVCIQATIHKXXXXXXXXXXXXXXXISNGGGGERLAS--PTSTIAPPNDLSPPPSTSSNKAASPMMPXXXXXXXXXXXXXXXXXRRLSKRVTGGTDEEXXXXXXXXXXXXYLSKRPSFNELESKGIIADFVFGYPLEKLCEREDNLVPRFIVQIVHEVEKRGLDVDGIYRVSGNLSSVNKLRGLIDNGEMPDYSQPEWNDIHLLTGCLKLYFRXXXXXXXXFHLFDRFVGAMKSPFKPEKLKLMREVVSELKAERKETLNLLLTHFNRVMSMSSKNRMHSQNIAIVFGPTLMWPETDSINVAMTTVFQNQVIEFLVQEWNDVY 1592
            K+++K  W+  +       L F+KD KT++     +P  F T  PE +++L GATL    K+K   +K V ++ S  G   +    D++  +  W   I   I +L  E P           + G  ERL S       A PN            AA+P +                          G    E D ++++ KL+K+L +RP+   L  KG I D VFG  L  LCERE + VPRF+ Q +  VE RGLD+DG+YR+SGNL+++ KLR  +D+ E  D     W D+H++TG LKL+FRELPEPL PF  F +F+ A+K   +  + + +R++V  L A   +TL +L  H  RV+    +NRM  Q++AIVFGPTL+ PE +  ++ MT VFQNQV+E ++Q+  D++
Sbjct:  513 KRLRKKHWSASWTVLEGGVLTFFKDSKTSAAGGLRQPSKFST--PEYTVELRGATLSWAPKDK-SSRKNVLELRSRDGSE-YLIQHDSEAIISTWHKAIAQGIQELSAELPPEESESSRV--DFGSSERLGSWQEKEEDARPN------------AAAPAL--------------------------GPVGLESDLSKVRHKLRKFLQRRPTLQSLREKGYIKDQVFGCALAALCERERSRVPRFVQQCIRAVEARGLDIDGLYRISGNLATIQKLRYKVDHDERLDLDDGRWEDVHVITGALKLFFRELPEPLFPFSHFRQFIAAIKLQDQARRSRCVRDLVRSLPAPNHDTLRMLFQHLCRVIEHGEQNRMSVQSVAIVFGPTLLRPEVEETSMPMTMVFQNQVVELILQQCADIF 886
The following BLAST results are available for this feature:
BLAST of TCONS_00061952 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
RHG272.449e-5435.41Rho GTPase-activating protein 27 OS=Homo sapiens G... [more]
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