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Overview
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00061960 ID=TCONS_00061960|Name=TCONS_00061960|organism=Clytia hemisphaerica|type=transcript|length=4694bpRun BLAST on NCBI transcript from alignment at scaffold_361:1727911..1767858+ Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below.>TCONS_00061960 ID=TCONS_00061960|Name=TCONS_00061960|organism=Clytia hemisphaerica|type=transcript|length=39948bp|location=Sequence derived from alignment at scaffold_361:1727911..1767858+ (Clytia hemisphaerica) Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Position
The following features are aligned
Expression
Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Values :
GrOo_1 GrOo_2 FGOo_1 FGOo_2 EG_1 EG_2 P1_1 P1_2 P2_1 P2_2 P3_1 P3_2 PoPr_1 PoPr_2 St_1 St_2 GO_1 GO_2 PH_1 PH_2 BMF_1 BMF_2 MMF_1 MMF_2 M_1 M_2 GEC_1 GEC_2 GEN_1 GEN_2
Blast
BLAST of TCONS_00061960 vs. Swiss-Prot (Human)
Match: ADCY6 (Adenylate cyclase type 6 OS=Homo sapiens GN=ADCY6 PE=1 SV=2) HSP 1 Score: 502.286 bits (1292), Expect = 2.458e-153 Identity = 292/716 (40.78%), Postives = 438/716 (61.17%), Query Frame = 3
Query: 528 PHLHPVEEKFNLKYAISLFKTIPFPSPKIEELYRRYFFHLNQHFINWFLVILIVTCICEIGLHFHFNRTGSFRYTRGIFLVVQVTVFAALLSIINWNGSSGRLLVLVSYIIVFFNCLMTIFNSVPLEGDIHGVTKSMNFVIFAIYMTYVMLPLQFRMSICCGMLITTTHLITSVASQASTQKD-VWWLIATNILIYIAVNLAGIFSHYPAEQAQREAFLETRGFVETRLKLQRENQEQERLLLSVLPRHVAMEMKADIEGELEESMFSKIYIQRHANVSILFADIEGFTQLASQCTAHELVKTLNELFARFDQLAVKNHCMRIKILGDCYYCVSGLPEPRPDHAHCCINMGLDVIEAIGIVREAVGVKLNMRVGIHTGKVHCGVLGLKKWQYDVWSNDVTIASHMESGGKPGLIHVTEAVCEEIKEEYSIEDGEGYKRDVYLKEHNIKSFFIVPSADKQKERQLSRNTKRSTTVANQYNVTPQGTQQAPNNGSARPEGVPNGVNNQNSQPFAKRFFEGVEEDDGSQELKEKKMRERLGLTMTTMSSEDEVNEFLERAIDARNVEHLKEENVRPVILKFRKQEYENKYCEEVDSLFIPHMMXXXXXXXXXXXXXXXXXPRTTKXXXXXXXXXXXXXPTILF-------SIFHK-MEKISRLFSPKIVKNQSLYRVLSITVIFLLYISATGTLFICPEQPPSIHSCIYNSSTTTPVEL 2648
P P + + + +F++ F S K+E LY+RYFF +NQ + + +L++ + H R L +F L+ + N + + +VSY+++ L + L D + + +F +Y+ Y +LP++ R ++ G+ ++T HLI +A Q + +W + N+L+++ N+ GI +HYPAE +QR+AF ETRG+++ RL LQ EN++QERLLLSVLP+HVAMEMK DI + E+ MF KIYIQ+H NVSILFADIEGFT LASQCTA ELV TLNELFARFD+LA +NHC+RIKILGDCYYCVSGLPE R DHAHCC+ MG+D+IEAI +VRE GV +NMRVGIH+G+VHCGVLGL+KWQ+DVWSNDVT+A+HME+GG+ G IH+T A + + +Y +E G G +R+ YLKE +I++F I+ ++ K+KE + + T + + P + P+ +R ++S+ F + G+ DD S++ + T ++ EDEV+EFL RAIDAR+++ L++++VR +L F++++ E KY +VD F ++ +VF FI I +L+FP +T L ++ S+F LLL T+L S+F K ++++SR IV++++ + I + L++ SA +F C P I SC TP ++
Sbjct: 108 PDAVPRSGRSCWRRLVQVFQSKQFRSAKLERLYQRYFFQMNQSSLTLLMAVLVLLTAVLLAFHAAPARPQPAYVAL---LACAAALFVGLMVVCNRHSFRQDSMWVVSYVVL--GILAAVQVGGALAADPRSPSAGLWCPVFFVYIAYTLLPIRMRAAVLSGLGLSTLHLI--LAWQLNRGDAFLWKQLGANVLLFLCTNVIGICTHYPAEVSQRQAFQETRGYIQARLHLQHENRQQERLLLSVLPQHVAMEMKEDINTKKEDMMFHKIYIQKHDNVSILFADIEGFTSLASQCTAQELVMTLNELFARFDKLAAENHCLRIKILGDCYYCVSGLPEARADHAHCCVEMGVDMIEAISLVREVTGVNVNMRVGIHSGRVHCGVLGLRKWQFDVWSNDVTLANHMEAGGRAGRIHITRATLQYLNGDYEVEPGRGGERNAYLKEQHIETFLILGASQKRKEEKAMLAKLQRTRANSMEGLMP---RWVPDRAFSR---------TKDSKAFRQM---GI--DDSSKDNRG---------TQDALNPEDEVDEFLSRAIDARSIDQLRKDHVRRFLLTFQREDLEKKYSRKVDPRFGAYVACALLVFCFICFIQLLIFPHSTLMLGIYASIFLLLLITVLICAVYSCGSLFPKALQRLSR----SIVRSRAHSTAVGIFSVLLVFTSAIANMFTCNHTP--IRSCAARMLNLTPADI 784 HSP 2 Score: 305.834 bits (782), Expect = 2.142e-85 Identity = 147/272 (54.04%), Postives = 205/272 (75.37%), Query Frame = 2
Query: 2816 ISSVIYLFVGLVSHTYMH----ENISRLDFLWKAQATQERDEMNDKRKYNKKLLYNILPVHVAEHFL--KDNNEDLYAQACSSVAVLFSNICNFSEFYMELEATGDGMECLRVLNQIIVDFDNILQDPKFKTIEKIKTIGETYMAASGLNLQSAEELQNCDHVEELAAFAMKMDDTLDEMNKNAFNNFKLKSGLSFGPVVAGVIGAKKPQYDIWGDTVNVASRMYSTGKPNCIQVTQSVYNLLSKRGFTFECRGLVAVKGKGKMVTYWLLKG 3613
++ VI L L Y+H E+ +RLDFLWK QAT E++EM + + YN++LL+NILP VA HFL + N++LY Q+C VAV+F++I NFSEFY+ELEA +G+ECLR+LN+II DFD I+ + +F+ +EKIKTIG TYMAASGLN + +++ H+ LA +AM++ + + +N+++FNNF++K GL+ GPVVAGVIGA+KPQYDIWG+TVNV+SRM STG P+ IQVT +Y +L+ +G+ ECRG+V VKGKG+M TY+L G
Sbjct: 897 MTPVILLVFALA--LYLHAQQVESTARLDFLWKLQATGEKEEMEELQAYNRRLLHNILPKDVAAHFLARERRNDELYYQSCECVAVMFASIANFSEFYVELEANNEGVECLRLLNEIIADFDEIISEERFRQLEKIKTIGSTYMAASGLNASTYDQVGR-SHITALADYAMRLMEQMKHINEHSFNNFQMKIGLNMGPVVAGVIGARKPQYDIWGNTVNVSSRMDSTGVPDRIQVTTDLYQVLAAKGYQLECRGVVKVKGKGEMTTYFLNGG 1165 HSP 3 Score: 85.8853 bits (211), Expect = 1.474e-16 Identity = 66/231 (28.57%), Postives = 109/231 (47.19%), Query Frame = 3
Query: 1179 LETRGFVETRLKLQRENQEQERLLLSVLPRHVAMEMKADIEGELEESMFSKIYIQRHANVSILFADIEGFTQLASQCTAH----ELVKTLNELFARFDQLAVK---NHCMRIKILGDCYYCVSGLPEPRPD-----HAHCCINMGLDVIEAIGIVREAVGVKLNMRVGIHTGKVHCGVLGLKKWQYDVWSNDVTIASHMESGGKPGLIHVTEAVCEEIKEEYSIEDGEGYK 1835
L+ G E +LQ N+ RLL ++LP+ VA A E ++Y Q V+++FA I F++ + A+ E ++ LNE+ A FD++ + +IK +G Y SGL D H + + ++E + + E M++G++ G V GV+G +K QYD+W N V ++S M+S G P I VT + Y + +GY+
Sbjct: 928 LQATGEKEEMEELQAYNR---RLLHNILPKDVAAHFLA------RERRNDELYYQSCECVAVMFASIANFSEFYVELEANNEGVECLRLLNEIIADFDEIISEERFRQLEKIKTIGSTYMAASGLNASTYDQVGRSHITALADYAMRLMEQMKHINEHSFNNFQMKIGLNMGPVVAGVIGARKPQYDIWGNTVNVSSRMDSTGVPDRIQVT-------TDLYQVLAAKGYQ 1142 The following BLAST results are available for this feature:
BLAST of TCONS_00061960 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens)) Total hits: 1
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