TCONS_00061964 (transcript) - C. hemisphaerica

Overview
NameTCONS_00061964
Unique NameTCONS_00061964
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length299

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00061964 ID=TCONS_00061964|Name=TCONS_00061964|organism=Clytia hemisphaerica|type=transcript|length=299bp
gatgatattcATCTGTCCAGCTCGTTGGGCCCAACAGGtataatttgatc
gaaaagaGCATTTGATTCAGCCAATCTTGTTTGTCGCGACGTAGTGTGAG
TAAATAAGAAAATGTCATTGTTAGCAACTTCCTATCGTTATGAAATCGAC
GGAAGTAAACGAAAATCTTTACAAAAGGCTCTGGCACGAGAAGAGTCAAG
AATCAAGGAAGATGAAATGTATGCAGAGCAAACACGAAGACTTGAATCga
ATCAAATGGTAAATGAAGTCAGCAAATGGACTGAAAATTTGGAGGAggt
Run BLAST on NCBI

transcript from alignment at scaffold_361:1782121..1788076+

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00061964 ID=TCONS_00061964|Name=TCONS_00061964|organism=Clytia hemisphaerica|type=transcript|length=5956bp|location=Sequence derived from alignment at scaffold_361:1782121..1788076+ (Clytia hemisphaerica)
gatgatattcATCTGTCCAGCTCGTTGGGCCCAACAGGtataatttgatc
gaaaagaGCATTTGATTCAGCCAATCTTGTTTGTCGCGACGTAGTGTGAG
GTTCGTCGGGTATAGAGCACAGATATTTATCgagaaacatgggactggtg
gttgatatctggtctgtcagttacatcaatatgccttcttacctgtcttt
aaaaatataaataaaagtaatcacggaaaaggacgcgaaaaaaaaagaca
taagtgtgagaacNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
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NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNaagtttgt
ctcggcctttttataatgagcaagacatacgttctctgattacgcaattt
tcatattgacattttcgaggcattttgatgtaactgtctgtattttcact
ttactgttaaatctctttgaacAACATTTGTCAAATCAGACTTTGGAGGT
TTgatgaaatggtggccgaattgcaggcccatgttttgtcagatagtccc
aagttagagcagttgacggcaTCAATTGTATCGAGTGGGAGAGTCTGGAT
TGGTCTTTTTTTTCGTGACATTTATGaagattatttttctctttttattc
taaAGACAAATTAACATTTTTCATGCAAGACATCCTACCTCTAAAGCTGT
TAGACTATATCCCATTTTTACACAGCAAGGTACCATAAGCTGGTCTaata
atgttgacatccctggGACCTGAAATTTCCCTActtattttttccctact
tAATTTTTCcctgagttttttttttttattttttttattttatttatttg
ataaagCAGGTTTAAAAAAAACGCAGACTAAGTTGATGTGGACCTGCAAC
tttttcccgagttatttttctgaGCTCATTTGCTTGTGATTTCATATTCA
GTTTTGGGAGTGATTTAGTTTATATGGGGATGTTGGACATGAGACTAACT
TAAACAGTATGGCTGCCATTAAAAATTATTCTTGTTTGCGTCACCCACCT
GCATCATATTTTAcgctgatttttttttggtgtcaagaaccttgtaaaca
ttccaaacACCTCCATCATAGGATTTGTCGTAGCTAAGTTCTTCCATTTT
GCGCAGTTTGAAGATTGAGCCGAGAATGCTCGTAGAACGTCTCCCACACg
gatgaaaaactttaatctgtcaatcactTTCTCAACTGAAGAGTATGCAA
TAGTGCTGCACGCAGATCATCAGTATATAtaccgggtgtctctgaaaaaa
cttccccctgtttgattcaaaattgagaaaaagtgaaaaaatatattagc
ttgattttttcgaaatcgtttagaagagggtttaacttaaattttggtat
atcaaactttaaaattgcttcattagaccaaaagttatgacaaaaagagt
aaaaaaaNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNaaattgttt
tcaaaaagagcgaaaaaagacgaaaaaacagggtatcaaatTAGACAAGA
AAACACTGTACTTTATTGACAgtaaagttttacttttgaacTTCTGTaca
tcttttttgttttattattcgtttttaatgatttttattgccAATTTAGA
GCTCCTTTTGGATTCATTAATGAGCATGAAGTTTAAACAAGCAACAAACT
TTTNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNtctaatgaagcaattttaaagtttgatataccaaaacttaagttaa
accctcctctaaacgatttcgaaaaaatcaagctaatatattttttcact
ttttcgcaactttgaatcaaacagggggaagttttttcagagacacccgg
tagatagtatttaattatcattatccctttcagtctagacttaaactcct
atatcaggattagaaactaggctagtcttacctctatTATCTTTGCCTTT
GTATCAATACAATTCTGACACAAGTTGGCACAACACATTAACAAATAATC
CTGCgagaagtttatatcaaaatctgcaacaaaaatgaaagtgatctctt
ctactgattgctttgtGGTGCTCATTTGCGGACTATTTATTTAATTTCCA
CCAATAAGATGGTCGTATTTTACAAGGTCTTTCTTTTTGGTACCCGTGGT
CTTTCAGTGCCTTGTCCGACAATTGGCTGTAAAATCTCACCCTCCAAAAC
ACCtcttttaattttatttgtttcaatcagaAAAGGAGTAGGCTGTTTCT
CATCTTCAGTTCTCCAAAGAAAGCAGACATTTGATGTGAGGGTTAGATTG
TcaggtgcatgtcactagtccgacactttctagtccgaaaGTAAAGTAGT
CTgaatcaataaaataaattcacaatttagaagtcttttttttcCACCGT
CACTTTTGTctgaaaacgaaagatttttcaCTGAGTTAATATTAATTAAA
GTTCAATTTGGCAGCATTTTGatataattagaaataaaggaccacaaact
ttaattccagccccccctcccccccaaaaaaagaagggtcgtaaaaacag
ctaaatccaatttcttgactcttgccTAATCCTAATAAGcatcccaaaat
ttaagaaaagtcgggtttatgggcccaacctcaaagtcgccactttggat
ttttataagcacgtggttgcttataaaagatgtgcctcctctttggcgat
tcatatttcgtttcatatgtttttttttgattcGTTGTCGGACAACggat
tgttgtcggaatactgacgcattcgtcaaatccaacgtcaggcattttta
ctgtcagactagaaagtgtcggactacagACGACCTCccagattgtcaac
aaagtgccttaaaaaatcattgaattaaaagaagaactttaaatcttaaa
tattttcattttgaagaagtgGTGCAAAagagtgaaacatggaaaagttt
tattttctattGCTTTAATTGAAATGGGagatttgagaaattttctgtgt
ttagttttttgcacaaacatTTGTAACTATGTACAAGAACACGTCTCTAT
CAAGATGTTGGctggaaatcgaaaatgaaagtaaaatcggcctgCACTCA
TAATCCCACAATCTTGATATtagagtttaagtctatactgcctttatttt
catttctggaacTTTTTCAAAGAAGGAAAGAtagaaaagttatatttttt
ttactgctctattcacatactgaatttgaaagatcttctatgtggcgttt
tttttttttgcaaacttcaaacatttttttgtccTGTTTTAGCGAGACTT
TAGCTTTAAGAGCTTGCATACATTgcaattgttcttatcctgttcttatt
tatagttAGAGTGTAATAATTGAGGTATTTAAAGTGTTATATCCAACTTT
TACTACtatgacccctaaattgcttttatataaaattgagtaatttcagg
ctcagcattgttcttattttttggcgattttgagcctcattgttcttatt
aaaaaataagtGTACAACATATAAAAAATAGCGAATAACAATAAAACCTT
TCTGATGGGACTGATTTATACAATTAATCCAGAATCAAATGACTTTTTCT
GGCAATTTCAGAAAATAGACCGATGTTTATTTTGACTACAAACACAAATC
AGATTGTATTTCATTGTTTACACACTGTATATTTTATTGATCGCTTTTTA
GTAAATAAGAAAATGTCATTGTTAGCAACTTCCTATCGTTATGAAATCGA
CGGAAGTAAACGAAAATCTTTACAAAAGGCTCTGGCACGAGAAGAGTCAA
GAATCAAGGTTAGTGAAAATAAAGTGAATGAAGTTCTTTCAAATTGATAT
CCATGTTCCCTTTCAACCCTTAAAAATAATAAGACTTTTCGTAACGTTCC
TAgctttgcaaaattttaaaccaatagcatataaaaatctttttttagaa
aaatgaattGTGTTAAAAAGTTGACAGATTTGGATGAAAAGGTTTGATTT
TTCACTTATGAAAAGTTTGACATGATTTCTCTCGTTCTTTGTAAAGGAAG
ATGAAATGTATGCAGAGCAAACACGAAGACTTGAATCGTAAGTCTTATAA
ATTCTTAATGCATTGAAATATCATATCTTCCCAAACAGTGGTCTACCCAG
TTTCTACTCAGTTTATCCATTATTTTCTGTATACCTCAAATTCTTTACTG
ATGAAAATGATTATTCCCAATCTTATATATATAATCtaagaatttgtttt
tttaggaATCAAATGGTAAATGAAGTCAGCAAATGGACTGAAAATTTGGA
GGAggt
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_038845XLOC_038845Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00061964-exon-scaffold_361-1491911889:1782121..1782220TCONS_00061964-exon-scaffold_361-1491911889:1782121..1782220Clytia hemisphaericaexon
TCONS_00061964-exon-scaffold_361-1510915933:1782121..1782220TCONS_00061964-exon-scaffold_361-1510915933:1782121..1782220Clytia hemisphaericaexon
TCONS_00061964-exon-scaffold_361-1575043694:1782121..1782220TCONS_00061964-exon-scaffold_361-1575043694:1782121..1782220Clytia hemisphaericaexon
TCONS_00061964-exon-scaffold_361-1491911889:1787472..1787578TCONS_00061964-exon-scaffold_361-1491911889:1787472..1787578Clytia hemisphaericaexon
TCONS_00061964-exon-scaffold_361-1510915933:1787472..1787578TCONS_00061964-exon-scaffold_361-1510915933:1787472..1787578Clytia hemisphaericaexon
TCONS_00061964-exon-scaffold_361-1575043694:1787472..1787578TCONS_00061964-exon-scaffold_361-1575043694:1787472..1787578Clytia hemisphaericaexon
TCONS_00061964-exon-scaffold_361-1491911889:1787817..1787857TCONS_00061964-exon-scaffold_361-1491911889:1787817..1787857Clytia hemisphaericaexon
TCONS_00061964-exon-scaffold_361-1510915933:1787817..1787857TCONS_00061964-exon-scaffold_361-1510915933:1787817..1787857Clytia hemisphaericaexon
TCONS_00061964-exon-scaffold_361-1575043694:1787817..1787857TCONS_00061964-exon-scaffold_361-1575043694:1787817..1787857Clytia hemisphaericaexon
TCONS_00061964-exon-scaffold_361-1491911889:1788026..1788076TCONS_00061964-exon-scaffold_361-1491911889:1788026..1788076Clytia hemisphaericaexon
TCONS_00061964-exon-scaffold_361-1510915933:1788026..1788076TCONS_00061964-exon-scaffold_361-1510915933:1788026..1788076Clytia hemisphaericaexon
TCONS_00061964-exon-scaffold_361-1575043694:1788026..1788076TCONS_00061964-exon-scaffold_361-1575043694:1788026..1788076Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_361supercontigscaffold_361:1782121..1788076 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
30.4288	17.8857	23.0303	35.9776	99.3335	92.4392	66.9174	94.6397	21.5069	22.1892	15.3923	33.0806	2.88101	1.77928	2.91904	2.44049	10.8269	9.02032	6.4251	4.48606	5.53651	3.57241	9.51334	6.70122	94.6623	51.0312	11.545	4.95167	2.52018	8.28742
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00061964 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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