TCONS_00061968 (transcript) - C. hemisphaerica

Overview
NameTCONS_00061968
Unique NameTCONS_00061968
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length474

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00061968 ID=TCONS_00061968|Name=TCONS_00061968|organism=Clytia hemisphaerica|type=transcript|length=474bp
GTTAATACTCCTTTACGACGGCCATGGATAAGTCAATCGAACATGGAGGA
GGGCGTAAGAAGAGTTTTGGGCGTGGTTTTGATTTCATGATGTATAACGT
GGATGATATACCGCCATGGTATTACACTATACTCCTCTCACTTCAGCATT
ACATGACGATGGTGGGATCAACTCTGGTCATCCCCATTCTTCTTGCTGGT
CCTCTTTGTATTGGCGACAACCCTCTTGCATTGAGTGAAATCATCAGCAC
TGTTTTCCTGATTTCTGGGATAGCAACTATCGTCCAATCCTGTGTTGGCA
CCAGGACCAACCATCTCAATACTGAACCTTCCAAAATACAAATGTAACAA
TCCCTCGATTGTCTCAGTATTAAGCAACTCGACTGGTCCACTCAACACGA
CTATCAACTCGTTACTTGTCAACTCGACTATTCTTCCCTTTTTATTCAAC
TCGACCATCGATCCCTTGTTATTG
Run BLAST on NCBI

transcript from alignment at scaffold_361:109828..111163-

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00061968 ID=TCONS_00061968|Name=TCONS_00061968|organism=Clytia hemisphaerica|type=transcript|length=1336bp|location=Sequence derived from alignment at scaffold_361:109828..111163- (Clytia hemisphaerica)
GTTAATACTCCTTTACGACGGCCATGGATAAGTCAATCGAACATGGAGGA
GGGCGTAAGAAGAGTTTTGGGCGTGGTTTTGATTTCATGATGTATAACGT
GGATGATATACCGCCATGGTATTACACTATACTCCTCTCACTTCAGGTTG
GTGTAATCTGTTATAGACCTTCAATGTCAATTATAATGAAATATTGATTT
ATCACTTTGCTAGATAAGCCTAGTCTCATTTGCAAAGCACGCGCTTCCTA
TCTCCCAAATAGGAATGAAAGTCTACCTGGAGCCATCAAGTCATCTTTAT
AATCAGGCTGTTTTTTAGCTTTCCTGAAAAAACTCATACTACAAACTTTT
TTGAAAATCAAAGCTTTGGAGACAAACAGCATTGCGAAGATATACCTTTT
AAAACAGATATAAAGCTCAAGAGCCTAAGATCTAGAGCGTCAAATGTTTA
CATTGTTATCTAAAAAATCTTGTACCTTGAAAATATATATCATTATTTGC
ACAGCATTACATGACGATGGTGGGATCAACTCTGGTCATCCCCATTCTTC
TTGCTGGTCCTCTTTGTATTGGCGACAACCCTCTTGCATTGAGTGAAATC
ATCAGCACTGTTTTCCTGATTTCTGGGATAGCAACTATCGTCCAATCCTG
TGTTGGCACCAGGTGGGTTCGCTGATTTGAACATTTATTTTTATTTTTTG
GATATTAGTACCATCGGAAGAGATCATATCAGCTTCCTCCCTATTATGCT
ATCACTAAAATAAGTCACGAACATCACTTGCCTCGTATTCAAACAATATC
CATGGTGATCACGTTCCTTAAGACATTAAATGATTTTTTAATGAATAGAA
GGTAGTTGTAATAAAATCCGCTTGGAGTTAATCACCATGGCAATAATTTC
AAAACGAGGCAAGTGATGTTCATGAAGTAATTAATGAAAAGGTCTATTGG
TTTAATTTATAGCGTACTTCAGTTTAAAAACAACTATGTTTAACTATGCT
TTCCTTACATCTTTTTGCACTTTAAAGTTATATCATGAAACAGCGTTGAA
ACGTGAAAGTATGGACTAGGCATCATCGAATTCAACTCAAAACAAATTTA
TCTTCTCTCATCTTTCACTTTAATTCAGGTTACCTATTGTCCAAGGAGCT
ACTGTCGCATTCTTAGGACCAACCATCTCAATACTGAACCTTCCAAAATA
CAAATGTAACAATCCCTCGATTGTCTCAGTATTAAGCAACTCGACTGGTC
CACTCAACACGACTATCAACTCGTTACTTGTCAACTCGACTATTCTTCCC
TTTTTATTCAACTCGACCATCGATCCCTTGTTATTG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_038848XLOC_038848Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00061968-exon-scaffold_361-1575043694:111018..111163TCONS_00061968-exon-scaffold_361-1575043694:111018..111163Clytia hemisphaericaexon
TCONS_00061968-exon-scaffold_361-1575043694:110502..110659TCONS_00061968-exon-scaffold_361-1575043694:110502..110659Clytia hemisphaericaexon
TCONS_00061968-exon-scaffold_361-1575043694:109828..109997TCONS_00061968-exon-scaffold_361-1575043694:109828..109997Clytia hemisphaericaexon
TCONS_00061968-exon-scaffold_361-1510915933:111018..111163TCONS_00061968-exon-scaffold_361-1510915933:111018..111163Clytia hemisphaericaexon
TCONS_00061968-exon-scaffold_361-1510915933:110502..110659TCONS_00061968-exon-scaffold_361-1510915933:110502..110659Clytia hemisphaericaexon
TCONS_00061968-exon-scaffold_361-1510915933:109828..109997TCONS_00061968-exon-scaffold_361-1510915933:109828..109997Clytia hemisphaericaexon
TCONS_00061968-exon-scaffold_361-1491911889:111018..111163TCONS_00061968-exon-scaffold_361-1491911889:111018..111163Clytia hemisphaericaexon
TCONS_00061968-exon-scaffold_361-1491911889:110502..110659TCONS_00061968-exon-scaffold_361-1491911889:110502..110659Clytia hemisphaericaexon
TCONS_00061968-exon-scaffold_361-1491911889:109828..109997TCONS_00061968-exon-scaffold_361-1491911889:109828..109997Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_361supercontigscaffold_361:109828..111163 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0	0.067669	0	0	0	0	0	0	0	0	0	0.388345	2.98766	2.03037	0	0.123148	0.38976	0	0.967566	0.770578	0	0	0	0	0	0	0	0	0	0.325402
Blast
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BLAST of TCONS_00061968 vs. Swiss-Prot (Human)
Match: S23A1 (Solute carrier family 23 member 1 OS=Homo sapiens GN=SLC23A1 PE=1 SV=3)

HSP 1 Score: 78.1814 bits (191), Expect = 5.315e-17
Identity = 33/73 (45.21%), Postives = 49/73 (67.12%), Query Frame = 3 
Query:   87 MMYNVDDIPPWYYTILLSLQHYMTMVGSTLVIPILLAGPLCIGDNPLALSEIISTVFLISGIATIVQSCVGTR 305
            M+Y ++D+PPWY  ILL  QHY+T    T+ +P LLA  LC+G +   +S++I T+F   GI T++Q+ VG R
Sbjct:   31 MLYKIEDVPPWYLCILLGFQHYLTCFSGTIAVPFLLAEALCVGHDQHMVSQLIGTIFTCVGITTLIQTTVGIR 103
The following BLAST results are available for this feature:
BLAST of TCONS_00061968 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
S23A15.315e-1745.21Solute carrier family 23 member 1 OS=Homo sapiens ... [more]
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