TCONS_00062006 (transcript) - C. hemisphaerica

Overview


Name	TCONS_00062006
Unique Name	TCONS_00062006
Type	transcript
Organism	Clytia hemisphaerica (Jellyfish)
Sequence length	1964

Sequence

The following sequences are available for this feature:

transcript sequence
protein sequence
transcript from alignment at scaffold_361:721410..725571-
coding sequence from alignment at scaffold_361:721410..725571-

transcript sequence

>TCONS_00062006 ID=TCONS_00062006|Name=TCONS_00062006|organism=Clytia hemisphaerica|type=transcript|length=1964bp
ATGGCTGAAAAAGTGGATGAGACTAGTTGGTCGGATTATTTTACTGCTAG
GAATGTTGCTAAGGCAACTGCTGGAGGTGTTGCAGCTGTAGGATTGGCCA
CGGTAGCTTTACCGGCTGCAGGTTTTACAGCTTCTGGTGTTGCTGCTGGA
AGTGCTGCAGCTTGGGTTCAAGGTGCAGTTTATGGTGGAGCAACATCTGG
ATTGTTTTCTGCTGCCACAAGTGCTGGTGCTGCTGGTATGGGTGCTGCTA
CACAAGTAGTGATTGGAGGAGCTGGTGCAGCAGCTACATGCAAAGTTTTA
GGCACTGATTCTAAAGACAAAACATCTACCTAGATCTACGGTGTAGTGTT
TCCAGGTGATTTATAAGATTATTATGAATTTTGTTGCTTTTGTTGACTGT
GGTAGAAAGGGTGGCAGAGgtaaaagattaaaaaaatggaATGGCTTTGG
AACACAACAAAAGATAATTATAATTATTACGTGAGACAAAACTATGACTA
TTATCTGAAAGATAGAGTTGATACAACGTACAATGATGCAAAAAGATGGC
TTGGATATCGTCAGCCATTTTTATTTCATGTTAACAAAACACCAATAGAT
CaaattgaagaaattcaaaatttattagATGAGTTAGGTTACAAGGATAT
TGGTCATTTGGAGTTTTCTGAATCCAATCAAACTGACTTCGCCAAAATTG
TCTCTGGTGCACAATCAGATTTTCATTACCCTGCAATCTATTTCAGTGTG
GCTGATTATTCATGGATGAAATGGATAGGTATTGCGGCATTTGCTGGAGT
CACAGCACCCCTTGTTCTTCCATATTGTCTAGGTGCACTTGGATTTGCAA
AAGCTGGCATTGCAGCAAACAGTTTGGCAGCAACCATTCAGCCGATATTA
TACAAGGGAACAACAACTGGTGTGTTTTCTTTGCTACAAAGTGCTGGTGC
TGGTGGTTTGAGCGTGGCTGGAAATGTTGCTGTTGGTGGTGCAGCATCTT
CAACAGTTGTGGCTGGAGGTAAAATCACCGGAGCTGTATTAACTGACGAG
GCTAAAGAACAAGTATTCAATCCAGATCTGAATATGAAGCTGGTAATTTT
CTACAGGGAAGGTCAGAAATGGGACGACTTTTCAACAGTATCAAAATACg
tgaaaacaaattttggaATAAACACAGAACAAATGGATGTAGGTAAAAAT
CTTATTGGCATTGAATCTACTAAGGAAAAGGAAGATGATTTCAATTCACT
TTGTAAAGAGGAGAGGAAGCTTCCAATAGCACCCGGTGGTATTCTGTCAT
TACAATTCACAAAAGAATATCTCGTTAATAATGAAGCATGGCGAATCTTA
AAAGCTTTGCCCAAAGATCCTTCAAAATTATGAAAACATCactccaatga
aataggaaagTGACGCTTTCATTCATCGAGTTTTATGAACAACTAGTAAG
TTTGTTTTCGaagattgattttcttttatgaTTTCTAATTATTTCTAAAA
CGGTCAAATATTTTACACTATTTTACAAACAGTTGAGTTTGAAAAAGAGT
TAGACAAAAATTTATGTAGATTTTGCTCAGGATTTTACTTCCCTTTAATG
CTAAAGTATACCTTAGAGAGACATTACTGTAGTAAACTGTTAACATTGCA
CAAATTACGTGTCTGTAAATGAAACAATTCAAATCACGTACCAAAAACTA
ATTtattaaacaatagaaattaaaattagccatatttatGCAGAGACTAA
ATAGTTTGTTTCAAACCATCACAAGTCGCTGCCAGAATCTTATttatatt
cttgatattcatgacgtaatcttttgtACGGAAACACCTGAAGAACACCG
GGCATTTGCCACAAATGGTGTTCTTCGGGTGTTTCCGTTATCTGGCACCc
acagatggtgaaattttcatccgacacgctaaagctctgaaggtcgggaa
aattttcaacatct

Run BLAST on NCBI

protein sequence of TCONS_00062006-protein

>TCONS_00062006-protein ID=TCONS_00062006-protein|Name=TCONS_00062006-protein|organism=Clytia hemisphaerica|type=polypeptide|length=315bp
MEWLWNTTKDNYNYYVRQNYDYYLKDRVDTTYNDAKRWLGYRQPFLFHVN
KTPIDQIEEIQNLLDELGYKDIGHLEFSESNQTDFAKIVSGAQSDFHYPA
IYFSVADYSWMKWIGIAAFAGVTAPLVLPYCLGALGFAKAGIAANSLAAT
IQPILYKGTTTGVFSLLQSAGAGGLSVAGNVAVGGAASSTVVAGGKITGA
VLTDEAKEQVFNPDLNMKLVIFYREGQKWDDFSTVSKYVKTNFGINTEQM
DVGKNLIGIESTKEKEDDFNSLCKEERKLPIAPGGILSLQFTKEYLVNNE
AWRILKALPKDPSKL

Run BLAST on NCBI

transcript from alignment at scaffold_361:721410..725571-

Legend: exonfive_prime_UTRCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

>TCONS_00062006 ID=TCONS_00062006|Name=TCONS_00062006|organism=Clytia hemisphaerica|type=transcript|length=4162bp|location=Sequence derived from alignment at scaffold_361:721410..725571- (Clytia hemisphaerica)
ATGGCTGAAAAAGTGGATGAGACTAGTTGGTCGGATTATTTTACTGCTAG
GAATGTTGCTAAGGCAACTGCTGGAGGTGTTGCAGCTGTAGGATTGGCCA
CGGTAGCTTTACCGGCTGCAGGTTTTACAGCTTCTGGTAGGTGTACTTGA
ATATTCAAGATGATACTATTTTTGACTAGAAAATGCCTGATGTCTTAGAT
CCCTAACGAAAAACTCAATGATATAAAAGTAAGATAAATTCAAGTGATTC
TAAGAGAATTGTCTGTTTTATTAACAAGCTCAGTTTTNTAAATTCAAGTG
ATTCTAAGAGAAACTTCTATTTTATTAACAAGCTCAGTTTTTCAAAAATA
ATTTGATTTACTTTTGATTATAGGTGTTGCTGCTGGAAGTGCTGCAGCTT
GGGTTCAAGGTGCAGTTTATGGTGGAGCAACATCTGGATTGTTTTCTGCT
GCCACAAGTGCTGGTGCTGCTGGTATGGGTGCTGCTACACAAGTAGTGAT
TGGAGGAGCTGGTGCAGCAGCTACATGCAAAGTTTTAGGCACTGATTCTA
AAGACAAAACATCTACCTAGATCTACGGTGTAGTGTTTCCAGGTGATTTA
TAAGATTATTATGAATTTTGTTGCTTTTGTTGACTGTGGTAGAAAGGGTG
GCAGAGGTATGTAGTTTCTTGTGTTTCTGATCTTTTATTCATATAGCAAT
TAAGTAGCAATCATACAAAAAGTATAATATACCAGATCTGTTGTAGAGAT
TAAGCTATCTCAGAATAGGGCTAACTCAGAATCACCCATTTCAATCATCA
CAGGTGACTCTTTGACATCAGATCCTGAGAAAGTAGCCAATTCCTTCAAT
GATTTTTTCACTACTATAGCTGANNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNTTCGTGAAAAAATGCCGCCTTCTTACAATCACTTCAGCAGTTTC
ATGAAAGATCCAAATCTGCATTCCATCCTCTTAGCACCAACCACTTATCA
AGAAATTGCGTAGGTGATTGGCTCTTTCTCAATAAATAAAGCAAGTGGTC
CTGAAAGTATTCCTATAAAAATCCTTAAACTTTTAAGACTTGATATTTCT
GTGCCAATATCGGCGCTGATAAACTACTCCTTTCTCAGTGGTATTTTTCC
CTCTAAAAATATCTAAAGTTGTGCCTGTCTTCAAACACAAAGGTTCTCCC
CTTGAAGTCTCTAATTCTATCTCTAGACAATCATCAAAATAAAGTAAAAT
AGTGTGGAAAATGAATTAATGTACAATAAAATTTCTTGATTCGGGTCGTT
AAAAAGTGTTTAAAGTATTTTAGACAAGGGGGGCACTCGATTTCTAAATG
ACGTCATGTGCCGCCAAAAAAATGGCTTCCAAAAATCGGACCCTTGCAGT
GCAGCCTTTGAGCAGTGAAAAAGTATCCTTACAGTACATTTTACCGAACG
TTTCTCTTCCTTACAGTGTAGTTTGATTTAAGTGTCGACACAATGTGCAA
AATAAATCAAAATGGGTGCGAGTCAGGACTATAAAGATATGATCAGATTT
TTACCGTCAGACTTGCGATTCAGCAGTCCCTAAACACACCCTTACAGTGT
ATCCAGCTAAAATAAGACCATTGTAGTGCATTCTATCAAGAGTGTACTTG
ATACAATGCATTTCGAGGGTCTCGAAAATTCTACCCTTAAGGGCGGCGTA
TGAGCGCCCCCTCCCCCACGGTTTGATAAGTATTTGGTCCCATTTTTTTA
TGATTGGGTATATGTGAATGAGTCCGATAGTGACTTTCTCTATGAAAGTC
AAATTTGTACAAATGCCAAATTGTAAATACAGTCATCCAATCTTACTGAA
GTGAATAGTTGCTCATCTTATCTAACATATTCTAAAGATGTATTTAATTT
TGTTGTGTGTATGGGAGTTGTAATCATATTATTTATGTAATTGTCTATTG
TCTAAACTTCTATATTTTTATTTATGTAATAGAATTTTATTGAGTTATGA
TTAAAAAAAAATGATATAAAATGCAAAATGTAACAATATTTATGACCATT
TTATTATCCTATTTAATTTTCCTATCATTTATTTTATTAATTATTCTATT
TTTTTTAGCTATACAGTGTTCTTAAAGTTATTGTTTTTAAAGAAGTGACA
GTGGCTTACAAATCATCACAATTTTTGATTTTTAGGTAAAAGATTAAAAA
AATGGAATGGCTTTGGAACACAACAAAAGATAATTATAATTATTACGTGA
GACAAAACTATGACTATTATCTGAAAGATAGAGTTGATACAACGTACAAT
GATGCAAAAAGATGGCTTGGATATCGTCAGCCATTTTTATTTCATGTTAA
CAAAACACCAATAGATCAAATTGAAGAAATTCAAAATTTATTAGATGAGT
TAGGTTACAAGGATATTGGTCATTTGGAGTTTTCTGAATCCAATCAAACT
GACTTCGCCAAAATTGTCTCTGGTGCACAATCAGATTTTCATTACCCTGC
AATCTATTTCAGTGTGGCTGATTATTCATGTAAGTATTGTGTGGTAGTGG
CCGTAGCATATGAGGTATACAGCATTTGTGTTTTGGTCACACAAGTTTAT
GAGTTCAATATCTAGCGCAGTCTCTCACAATCTTTTTTGAAATCATTTTG
ATGTTTAACATGTTCTATTCTTAGGGATGAAATGGATAGGTATTGCGGCA
TTTGCTGGAGTCACAGCACCCCTTGTTCTTCCATATTGTCTAGGTGCACT
TGGATTTGCAAAAGCTGGTATGAGATTTTAAATCATATTCTCAGACACAA
TATACCATGTAATAATTCTTAACTAATGGAAATTATGAATTCATGTTTAT
TTTTCACATTAATATCGAAGAACTTTTTATTTATTTTGTTGAAAAAATAA
GCTGAAACATTCTAAATACAATATATCAGTATTCTTTCTGTGTCTTTATC
TCAGGCATTGCAGCAAACAGTTTGGCAGCAACCATTCAGCCGATATTATA
CAAGGGAACAACAACTGGTGTGTTTTCTTTGCTACAAAGTGCTGGTGCTG
GTGGTTTGAGCGTGGCTGGAAATGTTGCTGTTGGTGGTGCAGCATCTTCA
ACAGTTGTGGCTGGAGGTAAAATCACCGGAGCTGTATTAACTGACGAGGC
TAAAGAACAAGTATTCAATCCAGATCTGAATATGAAGCTGGTAATTTTCT
ACAGGGAAGGTCAGAAATGGGACGACTTTTCAACAGTATCAAAATACGTG
AAAACAAATTTTGGAATAAACACAGAACAAATGGATGTAGGTAAAAATCT
TATTGGCATTGAATCTACTAAGGAAAAGGAAGATGATTTCAATTCACTTT
GTAAAGAGGAGAGGAAGCTTCCAATAGCACCCGGTGGTATTCTGTCATTA
CAATTCACAAAAGAATATCTCGTTAATAATGAAGCATGGCGAATCTTAAA
AGCTTTGCCCAAAGATCCTTCAAAATTATGAAAACATCACTCCAATGAAA
TAGGAAAGTGACGCTTTCATTCATCGAGTTTTATGAACAACTAGTAAGTT
TGTTTTCGAAGATTGATTTTCTTTTATGATTTCTAATTATTTCTAAAACG
GTCAAATATTTTACACTATTTTACAAACAGTTGAGTTTGAAAAAGAGTTA
GACAAAAATTTATGTAGATTTTGCTCAGGATTTTACTTCCCTTTAATGCT
AAAGTATACCTTAGAGAGACATTACTGTAGTAAACTGTTAACATTGCACA
AATTACGTGTCTGTAAATGAAACAATTCAAATCACGTACCAAAAACTAAT
TTATTAAACAATAGAAATTAAAATTAGCCATATTTATGCAGAGACTAAAT
AGTTTGTTTCAAACCATCACAAGTCGCTGCCAGAATCTTATTTATATTCT
TGATATTCATGACGTAATCTTTTGTACGGAAACACCTGAAGAACACCGGG
CATTTGCCACAAATGGTGTTCTTCGGGTGTTTCCGTTATCTGGCACCCAC
AGATGGTGAAATTTTCATCCGACACGCTAAAGCTCTGAAGGTCGGGAAAA
TTTTCAACATCT

Coding sequence (CDS) from alignment at scaffold_361:721410..725571-

>TCONS_00062006 ID=TCONS_00062006|Name=TCONS_00062006|organism=Clytia hemisphaerica|type=CDS|length=2844bp|location=Sequence derived from alignment at scaffold_361:721410..725571- (Clytia hemisphaerica)
GCATTGCAGCAAACAGTTTGGCAGCAACCATTCAGCCGATATTATACAAG
GGAACAACAACTGGTGTGTTTTCTTTGCTACAAAGTGCTGGTGCTGGTGG
TTTGAGCGTGGCTGGAAATGTTGCTGTTGGTGGTGCAGCATCTTCAACAG
TTGTGGCTGGAGGTAAAATCACCGGAGCTGTATTAACTGACGAGGCTAAA
GAACAAGTATTCAATCCAGATCTGAATATGAAGCTGGTAATTTTCTACAG
GGAAGGTCAGAAATGGGACGACTTTTCAACAGTATCAAAATACGTGAAAA
CAAATTTTGGAATAAACACAGAACAAATGGATGTAGGTAAAAATCTTATT
GGCATTGAATCTACTAAGGAAAAGGAAGATGATTTCAATTCACTTTGTAA
AGAGGAGAGGAAGCTTCCAATAGCACCCGGTGGTATTCTGTCATTACAAT
TCACAAAAGAATATCTCGTTAATAATGAAGCATGGCGAATCTTAAAAGCT
TTGCCCAAAGATCCTTCAAAATTATGAGGATGAAATGGATAGGTATTGCG
GCATTTGCTGGAGTCACAGCACCCCTTGTTCTTCCATATTGTCTAGGTGC
ACTTGGATTTGCAAAAGCTGATGGAATGGCTTTGGAACACAACAAAAGAT
AATTATAATTATTACGTGAGACAAAACTATGACTATTATCTGAAAGATAG
AGTTGATACAACGTACAATGATGCAAAAAGATGGCTTGGATATCGTCAGC
CATTTTTATTTCATGTTAACAAAACACCAATAGATCAAATTGAAGAAATT
CAAAATTTATTAGATGAGTTAGGTTACAAGGATATTGGTCATTTGGAGTT
TTCTGAATCCAATCAAACTGACTTCGCCAAAATTGTCTCTGGTGCACAAT
CAGATTTTCATTACCCTGCAATCTATTTCAGTGTGGCTGATTATTCATGC
ATTGCAGCAAACAGTTTGGCAGCAACCATTCAGCCGATATTATACAAGGG
AACAACAACTGGTGTGTTTTCTTTGCTACAAAGTGCTGGTGCTGGTGGTT
TGAGCGTGGCTGGAAATGTTGCTGTTGGTGGTGCAGCATCTTCAACAGTT
GTGGCTGGAGGTAAAATCACCGGAGCTGTATTAACTGACGAGGCTAAAGA
ACAAGTATTCAATCCAGATCTGAATATGAAGCTGGTAATTTTCTACAGGG
AAGGTCAGAAATGGGACGACTTTTCAACAGTATCAAAATACGTGAAAACA
AATTTTGGAATAAACACAGAACAAATGGATGTAGGTAAAAATCTTATTGG
CATTGAATCTACTAAGGAAAAGGAAGATGATTTCAATTCACTTTGTAAAG
AGGAGAGGAAGCTTCCAATAGCACCCGGTGGTATTCTGTCATTACAATTC
ACAAAAGAATATCTCGTTAATAATGAAGCATGGCGAATCTTAAAAGCTTT
GCCCAAAGATCCTTCAAAATTATGAGGATGAAATGGATAGGTATTGCGGC
ATTTGCTGGAGTCACAGCACCCCTTGTTCTTCCATATTGTCTAGGTGCAC
TTGGATTTGCAAAAGCTGATGGAATGGCTTTGGAACACAACAAAAGATAA
TTATAATTATTACGTGAGACAAAACTATGACTATTATCTGAAAGATAGAG
TTGATACAACGTACAATGATGCAAAAAGATGGCTTGGATATCGTCAGCCA
TTTTTATTTCATGTTAACAAAACACCAATAGATCAAATTGAAGAAATTCA
AAATTTATTAGATGAGTTAGGTTACAAGGATATTGGTCATTTGGAGTTTT
CTGAATCCAATCAAACTGACTTCGCCAAAATTGTCTCTGGTGCACAATCA
GATTTTCATTACCCTGCAATCTATTTCAGTGTGGCTGATTATTCATGCAT
TGCAGCAAACAGTTTGGCAGCAACCATTCAGCCGATATTATACAAGGGAA
CAACAACTGGTGTGTTTTCTTTGCTACAAAGTGCTGGTGCTGGTGGTTTG
AGCGTGGCTGGAAATGTTGCTGTTGGTGGTGCAGCATCTTCAACAGTTGT
GGCTGGAGGTAAAATCACCGGAGCTGTATTAACTGACGAGGCTAAAGAAC
AAGTATTCAATCCAGATCTGAATATGAAGCTGGTAATTTTCTACAGGGAA
GGTCAGAAATGGGACGACTTTTCAACAGTATCAAAATACGTGAAAACAAA
TTTTGGAATAAACACAGAACAAATGGATGTAGGTAAAAATCTTATTGGCA
TTGAATCTACTAAGGAAAAGGAAGATGATTTCAATTCACTTTGTAAAGAG
GAGAGGAAGCTTCCAATAGCACCCGGTGGTATTCTGTCATTACAATTCAC
AAAAGAATATCTCGTTAATAATGAAGCATGGCGAATCTTAAAAGCTTTGC
CCAAAGATCCTTCAAAATTATGAGGATGAAATGGATAGGTATTGCGGCAT
TTGCTGGAGTCACAGCACCCCTTGTTCTTCCATATTGTCTAGGTGCACTT
GGATTTGCAAAAGCTGATGGAATGGCTTTGGAACACAACAAAAGATAATT
ATAATTATTACGTGAGACAAAACTATGACTATTATCTGAAAGATAGAGTT
GATACAACGTACAATGATGCAAAAAGATGGCTTGGATATCGTCAGCCATT
TTTATTTCATGTTAACAAAACACCAATAGATCAAATTGAAGAAATTCAAA
ATTTATTAGATGAGTTAGGTTACAAGGATATTGGTCATTTGGAGTTTTCT
GAATCCAATCAAACTGACTTCGCCAAAATTGTCTCTGGTGCACAATCAGA
TTTTCATTACCCTGCAATCTATTTCAGTGTGGCTGATTATTCAT

Gene-mRNA-Prot

This transcript is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
XLOC_038868	XLOC_038868	Clytia hemisphaerica	gene

The following polypeptide feature(s) derives from this transcript:


Feature Name	Unique Name	Species	Type
TCONS_00062006-protein	TCONS_00062006-protein	Clytia hemisphaerica	polypeptide

The following exon feature(s) are a part of this transcript:

Position

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
scaffold_361	supercontig	scaffold_361:721410..725571 -

Expression

Values :

    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
66.4987	68.7135	98.2981	103.494	5.82192	4.00746	6.3358	5.1398	6.58991	8.17692	8.092	6.20123	5.96657	5.50874	17.4637	15.1995	18.5002	16.7706	9.39433	10.522	10.7867	9.88813	30.6843	29.0883	10.8549	10.7672	29.0452	25.279	22.0251	19.5259

Annotated Terms

The following terms have been associated with this transcript:

Vocabulary: **INTERPRO**
Term	Definition
IPR009311	IFI6/IFI27

Vocabulary: **Cellular Component**
Term	Definition
GO:0016021	integral component of membrane

GO Annotation

GO Assignments

This transcript is annotated with the following GO terms.

Category	Term Accession	Term Name
cellular_component	GO:0016021	integral component of membrane

Blast

The following BLAST results are available for this feature:

BLAST of TCONS_00062006 vs. Swiss-Prot (Human)

BLAST of TCONS_00062006 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0


Match Name	E-value	Identity	Description

You are here

TCONS_00062006 (transcript) - C. hemisphaerica