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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00062014 ID=TCONS_00062014|Name=TCONS_00062014|organism=Clytia hemisphaerica|type=transcript|length=1466bp
TTCAgaagaagttttatttttgatgaagATGATAacgacattttcttctt
ttttggtCACCTTGTAGcttatttcttgaaaaaaaagaaatataaaatta
aaGTTCAATAAAGAGGGCTTGGTTGATTTTCATTGACTTGTTTCTAAGCT
GTGTGATATTTCTCTCCCTTGAGAATATGCTTAAAACTGAATATCTAACC
ACTTACACTTTAAATGGTGATCGTCATGCATCGACCGTCCACGATCACGT
GATCTTACCCAAACAACTGACAGACGATTTCTATTCCACATGGACGCAAT
GTTACGAAGAACTTTTCCACGCTTCACTTTCACCGAAATATATCCAGCGT
AAAGAATCAACAGCTAGTACTTCGGGTAGACCAACATCTCGATACGGACT
ACATCATTCTGTGTCTGAAATGAACTTAGCGTCCGGTTTCAATGATGGAT
ACGCTTCAGGAGGCGCCCGGTCGCGTAACAAACAAATGCATCGTCTGTCG
TTAGATGTTTCGAACATGAATCTTGATATTACGCCGGATGAGCATCCCTA
TCGACGTCATCAAAGACATTTATCTGATTCAGAATCTTCCATGAGATCAA
GTAACGAACGAACATCGAATCTCGCCAAATTCTTCGGACGCAAAAAAGTG
TATAAACTTTCGGACACTACTTCGTCAGCAACGCAGAATTCTTCAGCTGC
GGATTAAAACTAGGTTAGTAGAATGGAACATGGTTGCGTATCATATAACC
TTTGATGAAGAATGTTATAGTGAAGAGGCGGAGTTACATTGTGGAGGAGC
CAAACCAGTGGGATGACTCTAAGCTTGCACATTTTTTGTGAGACGGCTTC
GCATAACTGGATTTGAAATATTGTTAAGGATCTTTCCCTTGAATAGTACT
GTTAGATTCTTACAGTTGTTGTTTTCAAACAGCCAGACATTGTAACAGAG
ATATTCAAATCCTTTGAAATTATTTATGATATTCATgaagtaatgttttc
tacggaaaatcccggtttttgccagtagtggcaaattttatacaactttt
gtctagtttaaatttgtcactactggctaaaaccggggtatttccgtaga
aaacattacgtcgtgAATATCTTGAATTAAATATTGGTAGATTAGATTTA
CCTAATTATAATGAACTTCAGAAGGTATACATGAAATTTGCCAACTAATG
CCTTGTAATGAATCAATGGTCTTTACAAATGCTCTCCTCCAATGTGATTT
TTACCTCCGTAGTAAAATAAATTTGACGTAGAGAACTTTTCGAAATAGAC
TAGAAACTTTCTCTGTTTTGCCTTTAGGATAGATTTTCAATTAAATATTG
TTGTCAAATATCTTGTATTTATgacatgttattgtattttttgagacTTA
GATGATTTTAATTCGTGTAAATATGTTTTTCATAAagttcaagaaaatat
ttaaaattatgAAACT Run BLAST on NCBI transcript from alignment at scaffold_361:786340..788304- Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00062014 ID=TCONS_00062014|Name=TCONS_00062014|organism=Clytia hemisphaerica|type=transcript|length=1965bp|location=Sequence derived from alignment at scaffold_361:786340..788304- (Clytia hemisphaerica)
TTCAGAAGAAGTTTTATTTTTGATGAAGATGATAACGACATTTTCTTCTT
TTTTGGTCACCTTGTAGCTTATTTCTTGAAAAAAAAGAAATATAAAATTA
AAGTTCAATAAAGAGGGCTTGGTTGATTTTCATTGACTTGTTTCTAAGCT
GTGTGATATTTCTCTCCCTTGAGAATATGCTTAAAACTGAATATCTAACC
ACTTACACTTTAAATGGTAGGTTTTAATGAGGTTTTTTATCACAGTTTTT
ATTCGTGTTTCTATTTTTATCCGTATCCGTTTTCCTTGAACAATTCCATC
CGATGTACTTAACAGGCCCGGCGGAACCACCGTAAAAGTGGGGAGGCTGA
AGGCTCAAAATTATTTTGAAATTCATTTTGGGGAGGCTGAAATCTCCCCA
GTCTCCCTGCTTCCGCCGGGCCTGTATTAGTCCTCAAAGTAAAGATCTTA
CCATCAATTTCTCTTAGAATTTATTCCATTTATAGGAATAAATCTGAACC
CTTTTAATGGTTCTGTTCAGAGAGATATGACGGCACTGGCCCCCTTCATC
GCACAATTGTAAATGGCCCTCTCTTAATTGTAAATGAGGAGAGCTTACAT
AAATTCTACATCTGAGCTCTGTTTTGTTGTTATTTGCTTCAACTGATGGA
CAAGGTTCTTCCAGTCACATTCCCCTCACTGCGACCTCTAAATATTTCTA
TTTCTCCTTCTACAGGTGATCGTCATGCATCGACCGTCCACGATCACGTG
ATCTTACCCAAACAACTGACAGACGATTTCTATTCCACATGGACGCAATG
TTACGAAGAACTTTTCCACGCTTCACTTTCACCGAAATATATCCAGCGTA
AAGAATCAACAGCTAGTACTTCGGGTAGACCAACATCTCGATACGGACTA
CATCATTCTGTGTCTGAAATGAACTTAGCGTCCGGTTTCAATGATGGATA
CGCTTCAGGAGGCGCCCGGTCGCGTAACAAACAAATGCATCGTCTGTCGT
TAGATGTTTCGAACATGAATCTTGATATTACGCCGGATGAGCATCCCTAT
CGACGTCATCAAAGACATTTATCTGATTCAGAATCTTCCATGAGATCAAG
TAACGAACGAACATCGAATCTCGCCAAATTCTTCGGACGCAAAAAAGTGT
ATAAACTTTCGGACACTACTTCGTCAGCAACGCAGAATTCTTCAGCTGCG
GATTAAAACTAGGTTAGTAGAATGGAACATGGTTGCGTATCATATAACCT
TTGATGAAGAATGTTATAGTGAAGAGGCGGAGTTACATTGTGGAGGAGCC
AAACCAGTGGGATGACTCTAAGCTTGCACATTTTTTGTGAGACGGCTTCG
CATAACTGGATTTGAAATATTGTTAAGGATCTTTCCCTTGAATAGTACTG
TTAGATTCTTACAGTTGTTGTTTTCAAACAGCCAGACATTGTAACAGAGA
TATTCAAATCCTTTGAAATTATTTATGATATTCATGAAGTAATGTTTTCT
ACGGAAAATCCCGGTTTTTGCCAGTAGTGGCAAATTTTATACAACTTTTG
TCTAGTTTAAATTTGTCACTACTGGCTAAAACCGGGGTATTTCCGTAGAA
AACATTACGTCGTGAATATCTTGAATTAAATATTGGTAGATTAGATTTAC
CTAATTATAATGAACTTCAGAAGGTATACATGAAATTTGCCAACTAATGC
CTTGTAATGAATCAATGGTCTTTACAAATGCTCTCCTCCAATGTGATTTT
TACCTCCGTAGTAAAATAAATTTGACGTAGAGAACTTTTCGAAATAGACT
AGAAACTTTCTCTGTTTTGCCTTTAGGATAGATTTTCAATTAAATATTGT
TGTCAAATATCTTGTATTTATGACATGTTATTGTATTTTTTGAGACTTAG
ATGATTTTAATTCGTGTAAATATGTTTTTCATAAAGTTCAAGAAAATATT
TAAAATTATGAAACT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00062014-exon-scaffold_361-1575043694:788089..788304 | TCONS_00062014-exon-scaffold_361-1575043694:788089..788304 | Clytia hemisphaerica | exon |
| TCONS_00062014-exon-scaffold_361-1575043694:786340..787589 | TCONS_00062014-exon-scaffold_361-1575043694:786340..787589 | Clytia hemisphaerica | exon |
| TCONS_00062014-exon-scaffold_361-1510915933:788089..788304 | TCONS_00062014-exon-scaffold_361-1510915933:788089..788304 | Clytia hemisphaerica | exon |
| TCONS_00062014-exon-scaffold_361-1510915933:786340..787589 | TCONS_00062014-exon-scaffold_361-1510915933:786340..787589 | Clytia hemisphaerica | exon |
| TCONS_00062014-exon-scaffold_361-1491911889:788089..788304 | TCONS_00062014-exon-scaffold_361-1491911889:788089..788304 | Clytia hemisphaerica | exon |
| TCONS_00062014-exon-scaffold_361-1491911889:786340..787589 | TCONS_00062014-exon-scaffold_361-1491911889:786340..787589 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_361 | supercontig | scaffold_361:786340..788304 - |
Blast
The following BLAST results are available for this feature:
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