TCONS_00062071 (transcript) - C. hemisphaerica

Overview
NameTCONS_00062071
Unique NameTCONS_00062071
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length882

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00062071 ID=TCONS_00062071|Name=TCONS_00062071|organism=Clytia hemisphaerica|type=transcript|length=882bp
TAAGGGGGTAGTAGAAAAAATAGTTGAGAAAAATTAATCAAGCGTGTCAA
ATCTGGATAGCAATTCTCTTGCATTTATATGACTGGGTCGAAAGGCATAA
ATAAGGAAGGTATTTTACTGATCAACGCATAACACATTGTAGACATTGAG
AAGAGACGACTCTTgtaattccaaaaaaatgaCGAGGTATTTGGTTTTTG
CCATCATCATGGTTACCTTGACTTGCGCAGAAGCTTACTCCTTCTTTAGA
AGTGACGGAGTATGTGCTGATCGCAACCCGTTAGAATGTCAAGCAGCTAA
AGCAAATGGCAGAAGATGTGGAAGCGGTTACTATTATTGGAATGTCTGTC
CAGCAACTTGTGGAGCTTGTGACAAGAAAGATTCACTCAGAAAGAGAGAT
GATGTCTGTGCTGATACCAACCCAGCAAAATGTCAAACAGATAAAGCAAA
TGGCAGAAGATGTGGAACCGGTTACTACTATTGGAATGTCTGTCCAGCAA
CTTGTGGAGCTTGTGACAAGAAAGATTCACTCAGAAAGAGAGATTATATC
TGTGCTGATGTCAACCCATTAGAATGTCAAGCAGATAAAGCAAATGGCAG
AAGATGTGGAAGCGGTTACTACTATTGGAATGTCTGTCCAGCAACTTGTG
GAGCTTcaGATAAGAAGAAAGATTCGATATTGAGACACGACTATGagttg
aaaatgcAATTTCTTGACGAACTGGAACGAAAGATGGCAATGGTGTAGAT
TTTCCTGGACCATGCAAAAGTCTAATAATTTtagttaataatttgatttt
gatttacaGTATGTAACTATTCTCTtcaataatttcaaataaatatGCAT
AATTTAATATAAACTGACTTTCTCTTGAATTT
Run BLAST on NCBI

protein sequence of TCONS_00062071-protein

>TCONS_00062071-protein ID=TCONS_00062071-protein|Name=TCONS_00062071-protein|organism=Clytia hemisphaerica|type=polypeptide|length=189bp
MTRYLVFAIIMVTLTCAEAYSFFRSDGVCADRNPLECQAAKANGRRCGSG
YYYWNVCPATCGACDKKDSLRKRDDVCADTNPAKCQTDKANGRRCGTGYY
YWNVCPATCGACDKKDSLRKRDYICADVNPLECQADKANGRRCGSGYYYW
NVCPATCGASDKKKDSILRHDYELKMQFLDELERKMAMV
Run BLAST on NCBI

transcript from alignment at scaffold_361:1606734..1615165-

Legend: exonfive_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00062071 ID=TCONS_00062071|Name=TCONS_00062071|organism=Clytia hemisphaerica|type=transcript|length=8432bp|location=Sequence derived from alignment at scaffold_361:1606734..1615165- (Clytia hemisphaerica)
TAAGGGGGTAGTAGAAAAAATAGTTGAGAAAAGTAGGTTGAAACTTTATA
ATTTACATTTTACAGACTGGCCAATATTTTCAAAATATAAAAATTATATC
ATTATTTCAAGTCCATTCGTTTTAAGTAATCTTTGTTTAGCTTGCCAATT
TTCAACGAATGCTTCGGCTCTACCGTGAAAATGATAATTCAAAGCATTAC
ACGCTTTTTTATAAGAATAACTTCTGTAAGAATACCAAGGTGAGATTTCG
GAGTTAGAGCAATAGGCCTACTGTTTAACTGAAAGAATATTTGAACTTCA
AATCTTTACTTTTCCAATCTTTAAAAAGTCACACCCGAAAAAGTCGTAAG
ATTCTCGCATTTTTCAGGGGACCCTACTCCATAACTTTAGAGTCCTTACT
GATGGCATAAGAATTAGCAACACCTAATTTACCGGCTTCAATCTTCAGAA
AGAACCCGAATGAATGGATAATCTATTAATTGAATTGAAAGCTCGTTTAT
AAACGGACCTTTTTGAGGTAAGGTGAGCATATCCGGATCAAACTAGTTCC
CTTTCCAATCTGGGTAATTAAAGTTATTCGGAACGATTATTTGAGTGCAT
AATTATTATAATAACCATACCAACTTTGATGTGATTGATTTGTGATTAAT
TACTTTGATTTTTTCTCTGTGTGATGCCTTTCCTCTTTGATGTCTTCTTA
AGGTTAAAGCATAGTATAAGAAAACCGCGGCTGGAATGATAACATCTGAA
TTTCATTCTGTTGTTCTATCTCTGTCGTATGTGATGACTATTTGTTGATC
AAGAAATCAGTAATATTGCATCTTTAATGGTGAATTTTATTGGTTTGTCG
TTAATACTTACTTCTCAGTGCGTTTTAGACATTAATGATATGGCCTTGAT
ACTACACTTGCATTATAAAATTATTTTAAAGGATATATCAACACTAAGAA
ATTTAAACAAGCACAAAATGGCTGGACTGAAAGAACTAAAAAAGTAATAA
AGTAGTTCAGTGAAATCTTCTTAGAAATCAATGAAAAAGTACACCAAGAT
AATACTGTCAAAATTTCAAGCCACCACCTTCAAAATTTATCATTCAAACT
GACAGGAAAGTTGTCATCTTGAGTAAAATTCTTATAATTTAAATTTTGGT
GAAAAACTATTGTTTCCACAAAACACCCCTAAAATATGTCCAAAATTAGT
TCAAGTGTTCTATTGGGTACAGATTCAACGATATCTAATCATAAAAAAGC
TTTTTGTGAAGGAAAATAAGAGAAAAATTTCGAAAAACTATCTACCAAAA
ATAAACTGAGCATCTTGATGTTCTTATAAAGCTCGTAGACAGAGATGGAA
CAACAATTAACTGAAAAGGCAATGCGGTACAAATTCCAGCCGCGGGTCCA
TTATAATATGGTTAAAGGTTATAAATAAAAAAGATCTGGCCGTTATACAT
ATTTTTTATAAGAATAAACTATTAAAAACATAAGGCTTTGAACTTTGACT
TTAAAAACACCGAATTGCTTAGGAAAATGGACAGAAATACTTAAAAAATG
GCAAAAATAAGAACATGTTAAGAACATTTTTAGGCTTGAATCTCAAAACG
TTAAGAACACCCCAAGGCTTCAAAAGTTTTCAAAAATTTCTTATAAAAAA
CGTGTACCCTATATAATTGGGGGCAACTTGAAAGCAACATCCGTTGATTG
AACTTTTGAATAAGAAAAAAAATTAATTTGAAAGAAAGGTGTGTAGTTAT
TGTCTTTTTTTTATAGATTAATCAAGCGTGTCAAATCTGGATAGCAATTC
TCTTGCATTTATATGACTGGGTCGAAAGGCATAAATAAGGAAGGTATTTT
ACTGATCAACGCATAACACATTGTAGACATTGAGAAGAGACGACTCTTGT
AATTCCAAAAAAATGACGAGGTATTTGGTTTTTGCCATCATCATGGTTAC
CTTGACTTGCGCAGAAGCTTACTCCTTCTTTAGAAGTGACGGAGGTAAGA
TTTTTGATTCCTTTTATCATCCATTTCGCATTCAATAACTTGAAATAGGA
TTCTGATTGTTTTCTGTCAACTATGCTAAAGCTCTAGAGGAGTTGTTGTC
TTGTTGTCATCTCTGATGGATCTATGCATATGAAAAAATGATACTCGACT
TATTTTGAAAATTATTTCTGTCAAATTCTCTATTAAGTCTAAAAATCCAA
ATATTTCCTTTAGTATGTGCTGATCGCAACCCGTTAGAATGTCAAGCAGC
TAAAGCAAATGGCAGAAGATGTGGAAGCGGTTACTATTATTGGAATGTCT
GTCCAGCAACTTGTGGAGCTTGTGACAAGAAAGATTCACTCAGAAAGAGA
GATGATGTCTGTGCTGATACCAACCCAGCAAAATGTCAAACAGATAAAGC
AAATGGCAGAAGATGTGGAACCGGTTACTACTATTGGAATGTCTGTCCAG
CAACTTGTGGAGCTTGTGACAAGAAAGATTCACTCAGAAAGAGAGATTAT
ATCTGTGCTGATGTCAACCCATTAGAATGTCAAGCAGATAAAGCAAATGG
CAGAAGATGTGGAAGCGGTTACTACTATTGGAATGTCTGTCCAGCAACTT
GTGGAGCTTGTGACAAGAAAGATTCACTCAGAAAGAGAGATNNNNNNNNN
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TCTAGACTTGATTGAAAGTGAATTTAAGATAATCAGAACCAAACTACTTC
GAGATCAAACTTTTTTAGAGGAACTTATTATATTTAGAATTATAATATAT
GGCTTTAAAGAGGGGTTGTAATTTTACGGTGTGGCGAGATTGTCTCTTTT
TTAGTACGGTATTACGGAATTTGACGAAAAAATAGACGGGAAAACGGTAT
TTGAAAATCAGACGGTATTTAGCCTTATTTTTTGTCAGTATTCCAGTATT
GTTTTTTTTTCTTCAATTTTTCGGGATTCCGGGATTCAGCAAAAAACTTG
ACGGGAAAACGGTTTTCGAACCCCTACAAACCCCCTTTTTTTAAAAGGGT
ATAATATATAATAAACTTTTGTTTTTTTATAGCAGATAAGAAGAAAGATT
CGATATTGAGACACGACTATGGTAAGCGTTTTCAAAACTGAAATTGCCAT
ATTATAAAACTTTTAATAGGAACAAGTTAATTTGGATCAGCCTGTTCTTA
TTTTTTATTTTAAAGTAACTTTTCTTTAAGCTTAAATCAATATTTTCGTT
GTTATTTCGTAGATCCTGTCTTTAAAAAACAATAAAAAACACCTAAAAAG
CTGCTTTTTTCCAACAAATTCAACTACTACAACCAACTCGTTGACCAAAT
GGCATCGGCTGCATCATCCGTAAGGCCAAAACAATCTGCTGCTTCTAAGA
AAATCTTAATGAAAGAAGATATCATTATATGCACCGAAAATCGATGTGTT
GATGACAGGGATTCAGATTCGCTAACCTGTGCAAAATGTAAGAGNNNNNN
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AGCGATTTATAGAGGCCCATGTGCTTGCACGGTGGCCTGGAAATCTGTAA
AACATTATTATTATTATTATTATTATTATTATTATTTTCCTAACCTTCCT
CTTGTTAATCTCATCCCTAAAAGCGGACAAAACTCAGAAGGTGATTTTCA
GTGCAAAACGACATAACACAACATATCATTTTATTCACTTTTTAGAGTTG
AAAATGCAATTTCTTGACGAACTGGAACGAAAGATGGCAATGGTGTAGAT
TTTCCTGGACCATGCAAAAGTCTAATAATTTTAGTTAATAATTTGATTTT
GATTTACAGTATGTAACTATTCTCTTCAATAATTTCAAATAAATATGCAT
AATTTAATATAAACTGACTTTCTCTTGAATTT

Coding sequence (CDS) from alignment at scaffold_361:1606734..1615165-

>TCONS_00062071 ID=TCONS_00062071|Name=TCONS_00062071|organism=Clytia hemisphaerica|type=CDS|length=2280bp|location=Sequence derived from alignment at scaffold_361:1606734..1615165- (Clytia hemisphaerica)
AGTTGAAAATGCAATTTCTTGACGAACTGGAACGAAAGATGGCAATGGTG
TAGCAGATAAGAAGAAAGATTCGATATTGAGACACGACTATGTATGTGCT
GATCGCAACCCGTTAGAATGTCAAGCAGCTAAAGCAAATGGCAGAAGATG
TGGAAGCGGTTACTATTATTGGAATGTCTGTCCAGCAACTTGTGGAGCTT
GTGACAAGAAAGATTCACTCAGAAAGAGAGATGATGTCTGTGCTGATACC
AACCCAGCAAAATGTCAAACAGATAAAGCAAATGGCAGAAGATGTGGAAC
CGGTTACTACTATTGGAATGTCTGTCCAGCAACTTGTGGAGCTTGTGACA
AGAAAGATTCACTCAGAAAGAGAGATTATATCTGTGCTGATGTCAACCCA
TTAGAATGTCAAGCAGATAAAGCAAATGGCAGAAGATGTGGAAGCGGTTA
CTACTATTGGAATGTCTGTCCAGCAACTTGTGGAGCTTATGACGAGGTAT
TTGGTTTTTGCCATCATCATGGTTACCTTGACTTGCGCAGAAGCTTACTC
CTTCTTTAGAAGTGACGGAGAGTTGAAAATGCAATTTCTTGACGAACTGG
AACGAAAGATGGCAATGGTGTAGCAGATAAGAAGAAAGATTCGATATTGA
GACACGACTATGTATGTGCTGATCGCAACCCGTTAGAATGTCAAGCAGCT
AAAGCAAATGGCAGAAGATGTGGAAGCGGTTACTATTATTGGAATGTCTG
TCCAGCAACTTGTGGAGCTTGTGACAAGAAAGATTCACTCAGAAAGAGAG
ATGATGTCTGTGCTGATACCAACCCAGCAAAATGTCAAACAGATAAAGCA
AATGGCAGAAGATGTGGAACCGGTTACTACTATTGGAATGTCTGTCCAGC
AACTTGTGGAGCTTGTGACAAGAAAGATTCACTCAGAAAGAGAGATTATA
TCTGTGCTGATGTCAACCCATTAGAATGTCAAGCAGATAAAGCAAATGGC
AGAAGATGTGGAAGCGGTTACTACTATTGGAATGTCTGTCCAGCAACTTG
TGGAGCTTATGACGAGGTATTTGGTTTTTGCCATCATCATGGTTACCTTG
ACTTGCGCAGAAGCTTACTCCTTCTTTAGAAGTGACGGAGAGTTGAAAAT
GCAATTTCTTGACGAACTGGAACGAAAGATGGCAATGGTGTAGCAGATAA
GAAGAAAGATTCGATATTGAGACACGACTATGTATGTGCTGATCGCAACC
CGTTAGAATGTCAAGCAGCTAAAGCAAATGGCAGAAGATGTGGAAGCGGT
TACTATTATTGGAATGTCTGTCCAGCAACTTGTGGAGCTTGTGACAAGAA
AGATTCACTCAGAAAGAGAGATGATGTCTGTGCTGATACCAACCCAGCAA
AATGTCAAACAGATAAAGCAAATGGCAGAAGATGTGGAACCGGTTACTAC
TATTGGAATGTCTGTCCAGCAACTTGTGGAGCTTGTGACAAGAAAGATTC
ACTCAGAAAGAGAGATTATATCTGTGCTGATGTCAACCCATTAGAATGTC
AAGCAGATAAAGCAAATGGCAGAAGATGTGGAAGCGGTTACTACTATTGG
AATGTCTGTCCAGCAACTTGTGGAGCTTATGACGAGGTATTTGGTTTTTG
CCATCATCATGGTTACCTTGACTTGCGCAGAAGCTTACTCCTTCTTTAGA
AGTGACGGAGAGTTGAAAATGCAATTTCTTGACGAACTGGAACGAAAGAT
GGCAATGGTGTAGCAGATAAGAAGAAAGATTCGATATTGAGACACGACTA
TGTATGTGCTGATCGCAACCCGTTAGAATGTCAAGCAGCTAAAGCAAATG
GCAGAAGATGTGGAAGCGGTTACTATTATTGGAATGTCTGTCCAGCAACT
TGTGGAGCTTGTGACAAGAAAGATTCACTCAGAAAGAGAGATGATGTCTG
TGCTGATACCAACCCAGCAAAATGTCAAACAGATAAAGCAAATGGCAGAA
GATGTGGAACCGGTTACTACTATTGGAATGTCTGTCCAGCAACTTGTGGA
GCTTGTGACAAGAAAGATTCACTCAGAAAGAGAGATTATATCTGTGCTGA
TGTCAACCCATTAGAATGTCAAGCAGATAAAGCAAATGGCAGAAGATGTG
GAAGCGGTTACTACTATTGGAATGTCTGTCCAGCAACTTGTGGAGCTTAT
GACGAGGTATTTGGTTTTTGCCATCATCATGGTTACCTTGACTTGCGCAG
AAGCTTACTCCTTCTTTAGAAGTGACGGAG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_038900XLOC_038900Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00062071-exon-scaffold_361-1575043694:1615134..1615165TCONS_00062071-exon-scaffold_361-1575043694:1615134..1615165Clytia hemisphaericaexon
TCONS_00062071-exon-scaffold_361-1575043694:1613172..1613399TCONS_00062071-exon-scaffold_361-1575043694:1613172..1613399Clytia hemisphaericaexon
TCONS_00062071-exon-scaffold_361-1575043694:1612557..1612952TCONS_00062071-exon-scaffold_361-1575043694:1612557..1612952Clytia hemisphaericaexon
TCONS_00062071-exon-scaffold_361-1575043694:1610145..1610183TCONS_00062071-exon-scaffold_361-1575043694:1610145..1610183Clytia hemisphaericaexon
TCONS_00062071-exon-scaffold_361-1575043694:1606734..1606920TCONS_00062071-exon-scaffold_361-1575043694:1606734..1606920Clytia hemisphaericaexon
TCONS_00062071-exon-scaffold_361-1510915933:1615134..1615165TCONS_00062071-exon-scaffold_361-1510915933:1615134..1615165Clytia hemisphaericaexon
TCONS_00062071-exon-scaffold_361-1510915933:1613172..1613399TCONS_00062071-exon-scaffold_361-1510915933:1613172..1613399Clytia hemisphaericaexon
TCONS_00062071-exon-scaffold_361-1510915933:1612557..1612952TCONS_00062071-exon-scaffold_361-1510915933:1612557..1612952Clytia hemisphaericaexon
TCONS_00062071-exon-scaffold_361-1510915933:1610145..1610183TCONS_00062071-exon-scaffold_361-1510915933:1610145..1610183Clytia hemisphaericaexon
TCONS_00062071-exon-scaffold_361-1510915933:1606734..1606920TCONS_00062071-exon-scaffold_361-1510915933:1606734..1606920Clytia hemisphaericaexon
TCONS_00062071-exon-scaffold_361-1491911889:1615134..1615165TCONS_00062071-exon-scaffold_361-1491911889:1615134..1615165Clytia hemisphaericaexon
TCONS_00062071-exon-scaffold_361-1491911889:1613172..1613399TCONS_00062071-exon-scaffold_361-1491911889:1613172..1613399Clytia hemisphaericaexon
TCONS_00062071-exon-scaffold_361-1491911889:1612557..1612952TCONS_00062071-exon-scaffold_361-1491911889:1612557..1612952Clytia hemisphaericaexon
TCONS_00062071-exon-scaffold_361-1491911889:1610145..1610183TCONS_00062071-exon-scaffold_361-1491911889:1610145..1610183Clytia hemisphaericaexon
TCONS_00062071-exon-scaffold_361-1491911889:1606734..1606920TCONS_00062071-exon-scaffold_361-1491911889:1606734..1606920Clytia hemisphaericaexon
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00062071-proteinTCONS_00062071-proteinClytia hemisphaericapolypeptide
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_361supercontigscaffold_361:1606734..1615165 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
6.69491	5.7575	3.72578	2.2774	45.1294	32.6546	494.064	624.099	1308.62	1193.53	153.28	811.841	122.828	109.69	157.608	192.582	533.718	624.579	38.1053	233.618	1.47809	0.223746	15.2921	13.7378	15.0552	16.7311	0.289135	0.23143	0.760636	1.848
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
TermDefinition
IPR003582ShKT_dom
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00062071 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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