TCONS_00062091 (transcript) - C. hemisphaerica

Overview
NameTCONS_00062091
Unique NameTCONS_00062091
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length569

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00062091 ID=TCONS_00062091|Name=TCONS_00062091|organism=Clytia hemisphaerica|type=transcript|length=569bp
ttgaaatgacagtgaaatcgaaaaatacatttttgacATACTGTAACATG
CGACaagaaatttccaaattttacaaacaATGCAAAATAGTATTTGAAAT
ATTGAGTAGAGTATACTTTGAGTGTAGCTTACAGTGAGAAAGTGATAGAA
CTTATTCTCAAAATCAGAGGGACGAAAATGTTAATAATTTTGAGAATGGT
ATTAATTTTGATGTTAATTGAAAATGTTAGTTGTTGGTGCAAAGCTGTTG
ATTGCGAGATGACTGAATGGACGAAATGGAGTTTATGTGATAAATCATGT
GGAGGGGGTCTGAGAATGAGATTCAGATATCCACGTGTTCACCCACAATG
CAATGGTGTAAAATGCCCTGTGCTAAATATTAAACGAGGGCAATGTAATT
CAAAATGTTGTCCAATAGACTGTCGTTATGGACCTTGGATAAAAAGAGGC
CAATGTCAAGGATGTGGTAGAAACGGATCACAAACATTGGAACGTAAAGT
GATATCAAGGGAAAGTTGCGGTGGCAGATGTGATAAACTTCTTGTTAAAA
ATACGAAGTGTGATGCTAG
Run BLAST on NCBI

protein sequence of TCONS_00062091-protein

>TCONS_00062091-protein ID=TCONS_00062091-protein|Name=TCONS_00062091-protein|organism=Clytia hemisphaerica|type=polypeptide|length=130bp
MLIILRMVLILMLIENVSCWCKAVDCEMTEWTKWSLCDKSCGGGLRMRFR
YPRVHPQCNGVKCPVLNIKRGQCNSKCCPIDCRYGPWIKRGQCQGCGRNG
SQTLERKVISRESCGGRCDKLLVKNTKCDA
Run BLAST on NCBI

transcript from alignment at scaffold_361:197075..197643

Legend: exonthree_prime_UTRCDSfive_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00062091 ID=TCONS_00062091|Name=TCONS_00062091|organism=Clytia hemisphaerica|type=transcript|length=569bp|location=Sequence derived from alignment at scaffold_361:197075..197643 (Clytia hemisphaerica)
CTAGCATCACACTTCGTATTTTTAACAAGAAGTTTATCACATCTGCCACC
GCAACTTTCCCTTGATATCACTTTACGTTCCAATGTTTGTGATCCGTTTC
TACCACATCCTTGACATTGGCCTCTTTTTATCCAAGGTCCATAACGACAG
TCTATTGGACAACATTTTGAATTACATTGCCCTCGTTTAATATTTAGCAC
AGGGCATTTTACACCATTGCATTGTGGGTGAACACGTGGATATCTGAATC
TCATTCTCAGACCCCCTCCACATGATTTATCACATAAACTCCATTTCGTC
CATTCAGTCATCTCGCAATCAACAGCTTTGCACCAACAACTAACATTTTC
AATTAACATCAAAATTAATACCATTCTCAAAATTATTAACATTTTCGTCC
CTCTGATTTTGAGAATAAGTTCTATCACTTTCTCACTGTAAGCTACACTC
AAAGTATACTCTACTCAATATTTCAAATACTATTTTGCATtgtttgtaaa
atttggaaatttcttGTCGCATGTTACAGTATgtcaaaaatgtatttttc
gatttcactgtcatttcaa

Coding sequence (CDS) from alignment at scaffold_361:197075..197643

>TCONS_00062091 ID=TCONS_00062091|Name=TCONS_00062091|organism=Clytia hemisphaerica|type=CDS|length=390bp|location=Sequence derived from alignment at scaffold_361:197075..197643 (Clytia hemisphaerica)
AGCATCACACTTCGTATTTTTAACAAGAAGTTTATCACATCTGCCACCGC
AACTTTCCCTTGATATCACTTTACGTTCCAATGTTTGTGATCCGTTTCTA
CCACATCCTTGACATTGGCCTCTTTTTATCCAAGGTCCATAACGACAGTC
TATTGGACAACATTTTGAATTACATTGCCCTCGTTTAATATTTAGCACAG
GGCATTTTACACCATTGCATTGTGGGTGAACACGTGGATATCTGAATCTC
ATTCTCAGACCCCCTCCACATGATTTATCACATAAACTCCATTTCGTCCA
TTCAGTCATCTCGCAATCAACAGCTTTGCACCAACAACTAACATTTTCAA
TTAACATCAAAATTAATACCATTCTCAAAATTATTAACAT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_038914XLOC_038914Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00062091-proteinTCONS_00062091-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00062091-exon-scaffold_361-1491911889:197075..197643TCONS_00062091-exon-scaffold_361-1491911889:197075..197643Clytia hemisphaericaexon
TCONS_00062091-exon-scaffold_361-1510915933:197075..197643TCONS_00062091-exon-scaffold_361-1510915933:197075..197643Clytia hemisphaericaexon
TCONS_00062091-exon-scaffold_361-1575043694:197075..197643TCONS_00062091-exon-scaffold_361-1575043694:197075..197643Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_361supercontigscaffold_361:197075..197643 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0	0	0.111583	0	0	0	0	0	0	0	0	0	0	0	0	0.0600532	0	0	0	0	0	0	0.225989	0	0	0	0.270261	0	0.218764	0.222886
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
TermDefinition
IPR000884TSP1_rpt
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00062091 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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